View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16974_high_32 (Length: 323)
Name: NF16974_high_32
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 43092158 - 43091866
Alignment:
| Q |
20 |
gttcaatcttatgaaattatttttaacgatgaatatgttgctaacaacacagggaaaagtgttacataaatgcatattcttattcctataaatttgttct |
119 |
Q |
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| T |
43092158 |
gttcaatcttatgaatttatttttaacgatgaatatgttgctaacaacacagggaaaagtgttacataaatgcatattcttattcctataaatttgttct |
43092059 |
T |
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| Q |
120 |
tgggataatcatttcaccaacttcataacaacaaacattttatctaagcttccctttgtatgtgagatgacaaatatcttctacattaatgcaacttata |
219 |
Q |
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|| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43092058 |
tgagataatcatttcgccaacttcataacaacaaacattttacctaagcttccctttgtatgtgagatgacaaatatcttctacattaatgcaacttata |
43091959 |
T |
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| Q |
220 |
ttttctcttattatggaaaagtaaaattctgcaaactttacatgtcttatattatctccagttttatgtaaaagtttgcatgcatatattcat |
312 |
Q |
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| T |
43091958 |
ttttctcttattatggaaaagtaaaattctgcaaactttacatgtcttatattatctccagttttatgtaaaagtttgcatgcatatattcat |
43091866 |
T |
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