View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16974_high_34 (Length: 317)

Name: NF16974_high_34
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16974_high_34
NF16974_high_34
[»] chr8 (4 HSPs)
chr8 (5-285)||(7118506-7118788)
chr8 (6-82)||(30578295-30578371)
chr8 (1-82)||(27300382-27300463)
chr8 (6-82)||(12045607-12045683)
[»] chr2 (3 HSPs)
chr2 (1-82)||(11828774-11828855)
chr2 (1-82)||(12256937-12257018)
chr2 (1-82)||(38027569-38027650)
[»] chr7 (8 HSPs)
chr7 (5-82)||(24380675-24380752)
chr7 (1-82)||(49014353-49014434)
chr7 (6-82)||(27688678-27688754)
chr7 (1-82)||(17039193-17039274)
chr7 (49-82)||(30769613-30769646)
chr7 (1-82)||(43079586-43079667)
chr7 (6-82)||(5724079-5724155)
chr7 (6-82)||(44187732-44187808)
[»] chr5 (6 HSPs)
chr5 (1-82)||(91251-91332)
chr5 (6-82)||(29803266-29803340)
chr5 (6-82)||(19437298-19437374)
chr5 (6-82)||(25255293-25255369)
chr5 (6-82)||(25319083-25319159)
chr5 (6-82)||(40566171-40566247)
[»] chr4 (6 HSPs)
chr4 (1-82)||(29577390-29577471)
chr4 (1-82)||(6686082-6686163)
chr4 (6-82)||(44272766-44272840)
chr4 (1-82)||(46791945-46792026)
chr4 (6-82)||(10096696-10096772)
chr4 (30-82)||(33438110-33438162)
[»] chr1 (8 HSPs)
chr1 (1-82)||(50460666-50460747)
chr1 (6-82)||(34941874-34941950)
chr1 (8-82)||(48576459-48576533)
chr1 (1-82)||(578840-578921)
chr1 (1-82)||(27352666-27352747)
chr1 (6-82)||(12489535-12489611)
chr1 (30-82)||(32939240-32939292)
chr1 (6-82)||(40596008-40596084)
[»] chr3 (9 HSPs)
chr3 (6-82)||(40785653-40785729)
chr3 (1-82)||(1834542-1834623)
chr3 (1-82)||(16295500-16295581)
chr3 (6-82)||(1901880-1901956)
chr3 (6-82)||(1911326-1911402)
chr3 (6-82)||(8868913-8868989)
chr3 (6-82)||(25959496-25959572)
chr3 (6-82)||(36869791-36869867)
chr3 (6-82)||(41717304-41717380)
[»] chr6 (2 HSPs)
chr6 (5-82)||(32729929-32730006)
chr6 (6-82)||(16743220-16743296)


Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 285
Target Start/End: Original strand, 7118506 - 7118788
Alignment:
Q  5 tacaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaatnnnnnnnnnn--gaatattgtc 102  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||  |||||||||||||||||||||            ||||||| ||    
T  7118506 tacaactttctttctcatatactcattacattcttactatttcacttcaattttcattctttattgtttttgaccaataaaaaaagaaaagaatattatc 7118605  T
Q  103 acaaaatatttatacaaatatcattattcttttttaaatgcaagaaattcaggtaattttatgatgtagtctttgtcctgtgttgtgagatttgaagtag 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7118606 acaaaatatttatacaaatatcattattcttttttaaatgcaagaaattcaggtaattttatgatgtagtctttgtcctgtgttgtgagatttgaagtag 7118705  T
Q  203 aaaacgaaatggcaagatcttgtccgttgtatgttttttagcttaggaaacaagcacaaatgtccaataagaaagtgcgtggg 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7118706 aaaacgaaatggcaagatcttgtccgttgtatgttttttagcttaggaaacaagcacaaatgtccaataagaaagtgcgtggg 7118788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 30578295 - 30578371
Alignment:
Q  6 acaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    ||||||||||||||||||  | ||||||||||||||| | || ||||  ||||||||||  ||||||||||||||||    
T  30578295 acaactttctttctcatactcacgttatattcttactctctctcttcttttttctctctccattgtttttgaccaat 30578371  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 27300382 - 27300463
Alignment:
Q  1 tttgtacaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    ||||||||||||||| |||||||| | | |||| |||||| | | || ||||  |||||||||| |||||||||||||||||    
T  27300382 tttgtacaactttctctctcatattcacattatcttcttattctctctcttcctttttctctctctattgtttttgaccaat 27300463  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 12045683 - 12045607
Alignment:
Q  6 acaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||||||||| |||||||  | | ||||||||||||| | || ||||  ||||||||||  ||||||||||||||||    
T  12045683 acaactttctctctcatactcacattatattcttactctctctcttcctttttctctctccattgtttttgaccaat 12045607  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 11828855 - 11828774
Alignment:
Q  1 tttgtacaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    ||||||||||||||| |||||||| | |||||| |||||| | ||||  |||| ||||||||||  ||||||||||||||||    
T  11828855 tttgtacaactttctctctcatattcacgttatcttcttattctttctattcatttttctctctccattgtttttgaccaat 11828774  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 12256937 - 12257018
Alignment:
Q  1 tttgtacaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||||||||| |||| |||||||  | | |||| |||||| | | || ||||| |||||||||| |||||||||||||||||    
T  12256937 tttgtacaaccttctctctcatactcacattatcttcttattctctctcttcatttttctctctctattgtttttgaccaat 12257018  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 38027650 - 38027569
Alignment:
Q  1 tttgtacaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||||||||| |||| |||||||| | | |||| |||||| | | || ||||  |||||||||| |||||||||||||||||    
T  38027650 tttgtacaaccttctctctcatattcacattatcttcttattctctctcttcctttttctctctctattgtttttgaccaat 38027569  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 24380752 - 24380675
Alignment:
Q  5 tacaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||||||||||||||||||  | | |||| |||||| | | || ||||  ||||||||||||||||||||||||||||    
T  24380752 tacaactttctttctcatactcacattatcttcttattctctctcttcttttttctctctttattgtttttgaccaat 24380675  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 49014434 - 49014353
Alignment:
Q  1 tttgtacaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    ||||||||| ||||| ||||||| |||| ||||||| ||||| |||| |||   ||||||||||  ||||||||||||||||    
T  49014434 tttgtacaattttctctctcataaactcattatatttttactctttcgctttctttttctctctacattgtttttgaccaat 49014353  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 27688678 - 27688754
Alignment:
Q  6 acaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    ||||||||||||||||||  | | ||||||||||||||| || |||   ||||||||||  ||||||||||||||||    
T  27688678 acaactttctttctcatactcacattatattcttactatctctctttctttttctctctccattgtttttgaccaat 27688754  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 17039193 - 17039274
Alignment:
Q  1 tttgtacaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    ||||||||||||||| |||||||  | | |||| |||||| | | || ||||| ||||||||||  ||||||||||||||||    
T  17039193 tttgtacaactttctctctcatactcacattatcttcttattctctctcttcatttttctctctgcattgtttttgaccaat 17039274  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 30769646 - 30769613
Alignment:
Q  49 cttcaattttctctctttattgtttttgaccaat 82  Q
    ||||| ||||||||||||||||||||||||||||    
T  30769646 cttcatttttctctctttattgtttttgaccaat 30769613  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 43079667 - 43079586
Alignment:
Q  1 tttgtacaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||| |||||||||| |||||||  | | ||||||||||||| | || ||||  ||||||||||  ||||||||||||||||    
T  43079667 tttggacaactttctctctcatactcacattatattcttactttctctcttcctttttctctctccattgtttttgaccaat 43079586  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 5724079 - 5724155
Alignment:
Q  6 acaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||||||||| |||||||  | | ||||||||||| | | || ||||  |||||||||||||||||||| |||||||    
T  5724079 acaactttctctctcatactcacattatattcttattttctctcttcctttttctctctttattgttttggaccaat 5724155  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 44187732 - 44187808
Alignment:
Q  6 acaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||||||| |||||||||  | | ||||||||||||| | || ||||  ||||||||||  ||||||||||||||||    
T  44187732 acaactttatttctcatactcacattatattcttactctctctcttcttttttctctctccattgtttttgaccaat 44187808  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 91251 - 91332
Alignment:
Q  1 tttgtacaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||| |||||||||| |||||||  | | ||||||||||||| | || ||||  ||||||||||| ||||||||||||||||    
T  91251 tttggacaactttctctctcatactcacattatattcttactctctctcttcctttttctctcttcattgtttttgaccaat 91332  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 29803266 - 29803340
Alignment:
Q  6 acaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||||||||| |||||||| | | ||||||||||||| | ||  |||  |||||||||| |||||||||||||||||    
T  29803266 acaactttctctctcatattcacattatattcttactctctc--ttcttttttctctctctattgtttttgaccaat 29803340  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 19437298 - 19437374
Alignment:
Q  6 acaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||||||||| |||||||| | | ||||||||| ||| | || |||   |||||||||| |||||||||||||||||    
T  19437298 acaactttctctctcatattcacattatattctgactctctctcttactttttctctctctattgtttttgaccaat 19437374  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 25255293 - 25255369
Alignment:
Q  6 acaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||||||||| |||||||| | | ||||||||||| | | || ||||  |||||||||| ||||||||| |||||||    
T  25255293 acaactttctatctcatattcacattatattcttaatctctctcttcctttttctctctctattgttttggaccaat 25255369  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 25319083 - 25319159
Alignment:
Q  6 acaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||||||||| |||||||| | | ||||||||||| | | || ||||  |||||||||| ||||||||| |||||||    
T  25319083 acaactttctatctcatattcacattatattcttaatctctctcttcctttttctctctctattgttttggaccaat 25319159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 40566247 - 40566171
Alignment:
Q  6 acaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||||||||  |||||||| | | ||||||||||| | | || ||||| ||||||||||  ||||||||||||||||    
T  40566247 acaactttcactctcatattcacattatattcttattctctctcttcatttttctctctccattgtttttgaccaat 40566171  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 29577471 - 29577390
Alignment:
Q  1 tttgtacaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||||||||||||||||||||||  | | |||| |||||| | | || ||||| ||||||||||  ||||||||||||||||    
T  29577471 tttgtacaactttctttctcatactcacattatcttcttattctctctcttcatttttctctctccattgtttttgaccaat 29577390  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 6686082 - 6686163
Alignment:
Q  1 tttgtacaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||||||||| |||| |||||||    | |||| |||||| | |||| ||||| |||||||||| |||||||||||||||||    
T  6686082 tttgtacaacattctctctcatacttacattatcttcttattctttctcttcatttttctctctctattgtttttgaccaat 6686163  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 44272840 - 44272766
Alignment:
Q  6 acaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||||||||| |||||||  | | ||||||||||||| | ||  |||  ||||||||||||||||||||||||||||    
T  44272840 acaactttctctctcatactcacattatattcttactctctc--ttcttttttctctctttattgtttttgaccaat 44272766  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 46792026 - 46791945
Alignment:
Q  1 tttgtacaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    ||||||||| |||||||||||||  | | |||| |||||| ||| || ||||  |||||||||| |||||||||||| ||||    
T  46792026 tttgtacaattttctttctcatactcacattatcttcttattatctctcttcctttttctctctctattgtttttgatcaat 46791945  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 10096772 - 10096696
Alignment:
Q  6 acaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||| |||||||||||||  | | ||||||||||| | | || ||||| |||||||||| ||||||||| |||||||    
T  10096772 acaattttctttctcatactcacattatattcttattctctctcttcatttttctctctctattgttttggaccaat 10096696  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 33438110 - 33438162
Alignment:
Q  30 ttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    ||||||||||||| | || ||| | |||||||||| |||||||||||||||||    
T  33438110 ttatattcttactctctctctttatttttctctctctattgtttttgaccaat 33438162  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 50460747 - 50460666
Alignment:
Q  1 tttgtacaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||||||||||||||||||||||  | | |||| |||||| | | || ||||  |||||||||| |||||||||||||||||    
T  50460747 tttgtacaactttctttctcatactcacattatcttcttattctctctcttcctttttctctctctattgtttttgaccaat 50460666  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 34941950 - 34941874
Alignment:
Q  6 acaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||||||||| |||||||  | | ||||||||||||||| ||  |||| ||||||||||  ||||||||||||||||    
T  34941950 acaactttctctctcatactcacattatattcttactatctcttttcatttttctctctccattgtttttgaccaat 34941874  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 48576533 - 48576459
Alignment:
Q  8 aactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||||||| |||||||| | | ||||||||||| | | |||||||  |||||||||| ||||||||| |||||||    
T  48576533 aactttctctctcatattcgcattatattcttattctctcacttcttttttctctctatattgttttggaccaat 48576459  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 578840 - 578921
Alignment:
Q  1 tttgtacaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||| |||||||||| |||||||| |   ||| ||||||| | | || ||||| |||||||||| |||||||||||||||||    
T  578840 tttggacaactttctctctcatattcatattacattcttattctctctcttcatttttctctctctattgtttttgaccaat 578921  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 27352666 - 27352747
Alignment:
Q  1 tttgtacaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||| |||||||||| |||||||  | | ||||||||||||| | || ||||  ||||||||||  ||||||||||||||||    
T  27352666 tttggacaactttctctctcatactcacattatattcttactctctctcttcctttttctctctccattgtttttgaccaat 27352747  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 12489611 - 12489535
Alignment:
Q  6 acaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||||||||| |||||||| | | ||||||||||| | | || ||||  |||||||||| ||||||||| |||||||    
T  12489611 acaactttctctctcatattcacattatattcttaatttatctcttcttttttctctctctattgttttggaccaat 12489535  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 32939292 - 32939240
Alignment:
Q  30 ttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    ||||||| |||||  ||| ||||| |||||||||| |||||||||||||||||    
T  32939292 ttatatttttactccttctcttcatttttctctctctattgtttttgaccaat 32939240  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 40596084 - 40596008
Alignment:
Q  6 acaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||||||||| |||||||  | | ||||||||||||| | || ||||  ||||||||||  ||||||||||||||||    
T  40596084 acaactttctctctcatactcacattatattcttactctctctcttcctttttctctctccattgtttttgaccaat 40596008  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 40785729 - 40785653
Alignment:
Q  6 acaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||||||||| |||||||  | | ||||||||||||||| || | ||| ||||||||||  ||||||||||||||||    
T  40785729 acaactttctctctcatactcacattatattcttactatctctcatcatttttctctctccattgtttttgaccaat 40785653  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 1834542 - 1834623
Alignment:
Q  1 tttgtacaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||| |||||||||| |||||||  | | ||||||||||| | | || ||||  |||||||||| |||||||||||||||||    
T  1834542 tttgaacaactttctctctcatactcacattatattcttattctctctcttcctttttctctctctattgtttttgaccaat 1834623  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 16295500 - 16295581
Alignment:
Q  1 tttgtacaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    ||||||||||||||| |||||||  | | ||||||| ||| | | || ||||  |||||||||| |||||||||||||||||    
T  16295500 tttgtacaactttctctctcatactcacattatatttttattttctctcttcctttttctctctctattgtttttgaccaat 16295581  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 1901956 - 1901880
Alignment:
Q  6 acaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||||||||| |||||||  | | ||||||||||||| | || ||||  ||||||||||  ||||||||||||||||    
T  1901956 acaactttctctctcatactcacattatattcttactctctctcttcctttttctctctccattgtttttgaccaat 1901880  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 1911402 - 1911326
Alignment:
Q  6 acaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||||||||| |||||||  | | ||||||||||||| | || ||||  ||||||||||  ||||||||||||||||    
T  1911402 acaactttctctctcatactcacattatattcttactctctctcttcctttttctctctccattgtttttgaccaat 1911326  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 8868913 - 8868989
Alignment:
Q  6 acaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||||||||| |||||||  | | ||||||||||||| |||| ||||  ||||||||||  ||||||||||| ||||    
T  8868913 acaactttctctctcatactcacattatattcttactctttctcttcttttttctctctccattgtttttgaacaat 8868989  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 25959572 - 25959496
Alignment:
Q  6 acaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||||||||| |||||||  | | ||||||| ||||||| || ||||  ||||||||||  ||||||||||||||||    
T  25959572 acaactttctctctcatactcacattatatttttactatctctcttcctttttctctctccattgtttttgaccaat 25959496  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 36869867 - 36869791
Alignment:
Q  6 acaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||||||||| |||||||  | | ||||||||||||| | || ||||  ||||||||||  ||||||||||||||||    
T  36869867 acaactttctctctcatactcacattatattcttactctctctcttcctttttctctctccattgtttttgaccaat 36869791  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 41717304 - 41717380
Alignment:
Q  6 acaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||||||||| |||||||  | ||||||||||||||| | || | ||  ||||||||||  ||||||||||||||||    
T  41717304 acaactttctatctcatactcacgttatattcttactctctcgcctcctttttctctctccattgtttttgaccaat 41717380  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 32729929 - 32730006
Alignment:
Q  5 tacaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    ||||||||||| |||||||  | | ||||||||||||| | || ||||  |||||||||| |||||||||||| ||||    
T  32729929 tacaactttctctctcatactcacattatattcttactctctctcttcctttttctctctctattgtttttgatcaat 32730006  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 16743296 - 16743220
Alignment:
Q  6 acaactttctttctcatatactcgttatattcttactatttcacttcaattttctctctttattgtttttgaccaat 82  Q
    |||||||||| |||||||  | | ||||||||||||| | || ||||  ||||||||||  ||||||||||||||||    
T  16743296 acaactttctctctcatactcacattatattcttactctctctcttcctttttctctctcaattgtttttgaccaat 16743220  T

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