View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16974_high_9 (Length: 565)
Name: NF16974_high_9
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Complemental strand, 40383084 - 40382536
Alignment:
| Q |
1 |
cctgcactcatcttcctctccttcgccttctccgtcaccactttttggtctgttggacttgccggcgggacatctggtttcctcttttactttttcacca |
100 |
Q |
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| T |
40383084 |
cctgcactcatcttcctctccttcgccttctccgtcaccactttttggtctgttggacttgccggcgggacatctggtttcctcttttactttttcacca |
40382985 |
T |
|
| Q |
101 |
ttttagcttccttctgggctgggagctccttcgtcacgttcctctccggcgttgtttcgcatgtgatgcttggtttcaccgttgtggttgctattttagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40382984 |
ttttagcttccttctgggctgggagctccttcgtcacgttcctctccggcgttgtttcgcatgtgatgcttggtttcaccgttgtggttgctattttagc |
40382885 |
T |
|
| Q |
201 |
ttactttcttctcttcagtggattcttcatcagtagggataggattccaccttactggatatggttccattacctatcactggtgaagtacccttttgaa |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40382884 |
ttactttcttctcttcagtggattcttcataagtagggataggattccaccttactggatatggttccattacctatcactggtgaagtacccttttgaa |
40382785 |
T |
|
| Q |
301 |
ggagtgcttcagaatgagtttgatattaagccaccaaggtgcttcgtcaaagggattcagatgtttgataacactccgcttggtgatgtcccagggagtt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40382784 |
ggagtgcttcagaatgagtttgatattaagccaccaaggtgcttcgtcaaagggattcagatgtttgataacactccgcttggtgatgtcccagggagtt |
40382685 |
T |
|
| Q |
401 |
tgaaggttgagctgttgaagagcttgagtagtacactagggactaacataacgagttctacttgtgttgttactggagctgatatactgaagcagcaagg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40382684 |
tgaaggttgagctgttgaagagcttgagtagtacactagggactaacataacgagttctacttgtgttgttactggagctgatatactgaagcagcaagg |
40382585 |
T |
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| Q |
501 |
agtcacacaacttagtaaatggaactgcttgttcatcaccattgctctg |
549 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40382584 |
agtcacacaacttagtaaatggaactgcttgttcatcaccattgctctg |
40382536 |
T |
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