View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16974_low_10 (Length: 557)
Name: NF16974_low_10
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_low_10 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 74 - 557
Target Start/End: Complemental strand, 32554564 - 32554077
Alignment:
| Q |
74 |
tttagacttgaaagagaaaacttaacatgcatcatt----aaaaataaccatggaaaatggacatttttaatatgatttatattgtcaacagaaagtaat |
169 |
Q |
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| T |
32554564 |
tttagacttgaaagagaaaacttaacatgcatcattcataaaaaataattacggaaaatggacatttttaatatgatttgtattgtcaacggaaagtaac |
32554465 |
T |
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| Q |
170 |
gaagaagaaattaactaagtagtttagaaacagtcaatacctgaaggtcaggagggttaaacaccctctgaataggatcaggacaataaattctaccatt |
269 |
Q |
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| T |
32554464 |
gatgaagaaattaaccaagtagtttagaaattgccaatacctgaaggtcaggagggttaaacaccctctgaataggatcaggacaataaattctaccatt |
32554365 |
T |
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| Q |
270 |
atctccttgataatcaagttcttgtgtctgaatttcagaactaaaaaccatatttcctccaaacaaaccagaactatcagtagacaaggcagtagtaaga |
369 |
Q |
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| T |
32554364 |
atctccttgataatcaagttcttgtgtctgaatttcagaaccaaaaaccatatttccaccaaacaaaccagaactatcagtagacaaagcagtggtaaga |
32554265 |
T |
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| Q |
370 |
gaaccattaggcatgtatgccgccatgccggcaggaccaagataattgcaagaaggagaagaagggttcaaaggaacataagaaggtacagaagtaatgc |
469 |
Q |
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| T |
32554264 |
gaaccattaggcatgtatgccgccataccggcaggaccaagataattgcaagaaggagaagaagggttcaaaggaacataagaaggtacagaagtaatgc |
32554165 |
T |
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| Q |
470 |
aatcctcttcaaaaacagatggtaatgataagggagctcccataagaggtgcaactgaatcattcggattatgatactgcgaaaaccc |
557 |
Q |
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| T |
32554164 |
aatcctcttcaaaaacagatggtaatgataagggagctcccataagaggtgcaactgaatcatttggattatgatactgcgaaaaccc |
32554077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 32554680 - 32554614
Alignment:
| Q |
16 |
aaaccaactgccaaattggtcgatt-----ttcaactgattgaatcgactggttcagttcagtttta |
77 |
Q |
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| T |
32554680 |
aaaccaactgccaaactggtcgattctcagttcaactgattgaatcgaccggttcagtccagtttta |
32554614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 16921697 - 16921639
Alignment:
| Q |
252 |
acaataaattctaccattatctccttgataatcaagttcttgtgtctgaatttcagaac |
310 |
Q |
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| T |
16921697 |
acaataaattccaccattttcaccttgataatccaaatcttgtgtctgcatttcagaac |
16921639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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