View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16974_low_12 (Length: 495)
Name: NF16974_low_12
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 11 - 479
Target Start/End: Complemental strand, 31607554 - 31607086
Alignment:
| Q |
11 |
catagggaccatagagaatcctcaaaagtttaggtttggcaaacacaccagaaaggattcccccaagaataccagccacagcatgagtgtgaaagactcc |
110 |
Q |
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| T |
31607554 |
cataaggaccatagagaatcctcaaaagtttaggtttggcaaacacaccagaaaggattcccccaagaataccagccacagcatgagtgtgaaagactcc |
31607455 |
T |
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| Q |
111 |
taatgtatcatctacactttgaaagaatgacgatcttttgtgcaacaccatcatcgtgtaccatggaattgagccggacaaagctcccatcaatattgct |
210 |
Q |
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| T |
31607454 |
taatgtatcatctacactttgaaagaatggtgattttttgtgcaacaccatcatcgtgtaccatggaattgaaccggacaaagctcccatcaatattgct |
31607355 |
T |
|
| Q |
211 |
gcccaaggatccaccaatcctggtcacatacataggtaaaaataatgtcattacttgtggacatgtaagcttagaaagaagttttcagaattatatctcg |
310 |
Q |
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||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31607354 |
gcccatggatccaccaatccttgtcacatacataggtaaaaataatgtcattacttgtggacatgtaagcttagaaagaagttttcagaattatatctcg |
31607255 |
T |
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| Q |
311 |
caactattgaatgtgtcgttttgtgtgagctttacctgcacccggagtaatgcaaacgagaccagtcatcattccttggacagaacctatcaatgagccc |
410 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31607254 |
caactactgaatgtgtcgttttgtgtgagctttacctgcacccggtgtgatgcaaacgagaccagtcatcattccttggacagaacctatcaatgagcct |
31607155 |
T |
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| Q |
411 |
ttcttgtatacagccatatctagagaaatccaaacaagtatgcttgtagcagtgcacatatgagtattg |
479 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31607154 |
ttcttgtatacagccatatctagagaaatccaaacaagtatgcttgtagcagtgcacaaatgagtattg |
31607086 |
T |
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