View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16974_low_13 (Length: 486)
Name: NF16974_low_13
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 13871533 - 13871152
Alignment:
| Q |
1 |
caaacaaactattaatctctatcaatgggaagagtaacatttgatgattcaacctctttaaagtgtattgaagagaatataatgcaaatgagccaatagt |
100 |
Q |
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| T |
13871533 |
caaacaaactattaatct--atctatgggaagagtaacatttgatgattcaaactctttaaagtgtattgaagagaatataatgcaaatgtgccaatagt |
13871436 |
T |
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| Q |
101 |
gtgacttatattccaggacttacggattactaacaaacaagttatcttaactaaatgtatttcaaacagttttaacattgaaatttgctttgatcatgtg |
200 |
Q |
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| T |
13871435 |
gtgacttatattccaggacttacggattactaacaaacaagatatcttaactaaatgtatttcaaacagttttaacattgaaatttgctttgatcatgtg |
13871336 |
T |
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| Q |
201 |
tttgggcgacaaagacatttaaatgtactcagattaaattttgcttgtaaatttacttagagacatattatctataaactatcttaaatttgatagtgtg |
300 |
Q |
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| T |
13871335 |
tttgggcgacaaagacatttaaatgtactcagtttaaattttgcttgtaaatttacttagagacatattatctataaactatc----agttg-------- |
13871248 |
T |
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| Q |
301 |
aatatgttctaataatttgacagtgtgaataaattcagtaagtatatgatttgttacttcataggtgctactgtgaacttcaaagaatgaaaatttcaac |
400 |
Q |
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| T |
13871247 |
--tttttttta--aatttgacagtgtgaataaattcagtaagtatatgatttgttacttcataggtgctactgtgaacttcaaagaatgaaaatttcaac |
13871152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 401 - 470
Target Start/End: Complemental strand, 13870734 - 13870665
Alignment:
| Q |
401 |
ctcaatgtcattttcccgcctcttctcctctatcaaagccaccgtacctgcattgtttcgctgccactcc |
470 |
Q |
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| T |
13870734 |
ctcaatggcattttcccgcctcttctcctctatcaaagccaccgtaactgcattgattcgccgccactcc |
13870665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 12957481 - 12957543
Alignment:
| Q |
115 |
aggacttacggattactaacaaacaagttatcttaactaaatgtatttcaaacagttttaaca |
177 |
Q |
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| T |
12957481 |
aggacttactgattactaacaaacaagttatcttaactaaatgtatttccaatagttttaaca |
12957543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 13873776 - 13873703
Alignment:
| Q |
124 |
ggattactaacaaacaagttatcttaactaaatgtatttcaaacagttttaacattgaaatttgctttgatcat |
197 |
Q |
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| T |
13873776 |
ggattactaataaacaaattatcttaactaaatgaatttccaatagttttatcattgaaattttctttggtcat |
13873703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 13877671 - 13877603
Alignment:
| Q |
124 |
ggattactaacaaacaagttatcttaactaaatgtatttcaaacagttttaacattgaaatttgctttg |
192 |
Q |
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| T |
13877671 |
ggattactaataaataaattatcttaactaaatgaatttccaatagttttatcattgaaattttctttg |
13877603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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