View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16974_low_14 (Length: 482)

Name: NF16974_low_14
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16974_low_14
NF16974_low_14
[»] chr6 (12 HSPs)
chr6 (195-470)||(33019454-33019729)
chr6 (198-470)||(5086415-5086687)
chr6 (286-470)||(503923-504107)
chr6 (286-470)||(8263810-8263994)
chr6 (286-470)||(19227078-19227262)
chr6 (286-470)||(33639482-33639666)
chr6 (307-359)||(1334793-1334845)
chr6 (198-256)||(15644216-15644274)
chr6 (198-247)||(504130-504179)
chr6 (195-247)||(8263735-8263787)
chr6 (316-426)||(17874237-17874347)
chr6 (336-401)||(33745709-33745774)
[»] chr1 (8 HSPs)
chr1 (198-451)||(7178362-7178615)
chr1 (286-470)||(25505385-25505569)
chr1 (287-470)||(24314585-24314768)
chr1 (286-470)||(34709307-34709491)
chr1 (298-470)||(43810387-43810558)
chr1 (286-448)||(22576394-22576556)
chr1 (198-247)||(25505592-25505641)
chr1 (315-427)||(41181803-41181915)
[»] chr7 (21 HSPs)
chr7 (198-470)||(21439301-21439573)
chr7 (243-468)||(6970526-6970751)
chr7 (50-279)||(6970262-6970490)
chr7 (286-470)||(25923635-25923819)
chr7 (286-470)||(34518996-34519180)
chr7 (286-470)||(17804510-17804694)
chr7 (286-470)||(45987614-45987798)
chr7 (307-448)||(27941908-27942049)
chr7 (307-470)||(7377315-7377478)
chr7 (311-450)||(39060154-39060293)
chr7 (307-448)||(33796781-33796922)
chr7 (318-451)||(2009239-2009372)
chr7 (327-427)||(5356599-5356700)
chr7 (18-52)||(6970200-6970234)
chr7 (18-49)||(6918691-6918722)
chr7 (18-49)||(6923425-6923456)
chr7 (198-240)||(45987541-45987583)
chr7 (18-47)||(6922874-6922903)
chr7 (18-47)||(6955309-6955338)
chr7 (378-427)||(7459106-7459155)
chr7 (198-247)||(25923563-25923612)
[»] chr2 (5 HSPs)
chr2 (195-470)||(15017148-15017424)
chr2 (198-470)||(5325239-5325507)
chr2 (286-454)||(10978412-10978581)
chr2 (327-470)||(22725826-22725969)
chr2 (378-427)||(1379738-1379787)
[»] chr3 (4 HSPs)
chr3 (198-470)||(20894146-20894418)
chr3 (195-470)||(51144538-51144813)
chr3 (298-422)||(54558869-54558992)
chr3 (315-427)||(11639559-11639671)
[»] chr4 (26 HSPs)
chr4 (198-470)||(30309924-30310194)
chr4 (198-470)||(19113911-19114184)
chr4 (199-470)||(48031534-48031804)
chr4 (295-471)||(7472980-7473156)
chr4 (286-470)||(19644555-19644739)
chr4 (286-470)||(8934666-8934850)
chr4 (286-470)||(33988160-33988344)
chr4 (307-470)||(29554132-29554295)
chr4 (286-407)||(23119000-23119121)
chr4 (315-470)||(40150183-40150338)
chr4 (333-427)||(10563744-10563838)
chr4 (198-247)||(33988367-33988416)
chr4 (195-247)||(49926538-49926590)
chr4 (286-347)||(23657237-23657298)
chr4 (195-247)||(7472897-7472949)
chr4 (315-427)||(18935261-18935373)
chr4 (351-427)||(53779674-53779750)
chr4 (371-421)||(3861224-3861274)
chr4 (371-421)||(3869981-3870031)
chr4 (198-240)||(19644483-19644525)
chr4 (333-427)||(29213416-29213509)
chr4 (198-247)||(8934594-8934643)
chr4 (198-247)||(23118928-23118977)
chr4 (198-247)||(23657165-23657214)
chr4 (378-427)||(42777894-42777943)
chr4 (315-427)||(12881120-12881232)
[»] chr5 (7 HSPs)
chr5 (199-470)||(11575085-11575356)
chr5 (287-470)||(22095642-22095825)
chr5 (385-470)||(5415537-5415622)
chr5 (286-470)||(3727766-3727950)
chr5 (291-359)||(5415650-5415718)
chr5 (198-247)||(22095895-22095944)
chr5 (378-427)||(40089995-40090044)
[»] chr8 (3 HSPs)
chr8 (198-362)||(13909104-13909268)
chr8 (286-470)||(4988457-4988641)
chr8 (287-470)||(36318882-36319065)
[»] scaffold0108 (2 HSPs)
scaffold0108 (288-470)||(10475-10657)
scaffold0108 (198-246)||(10401-10449)
[»] scaffold0007 (1 HSPs)
scaffold0007 (315-427)||(181722-181834)


Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 195 - 470
Target Start/End: Original strand, 33019454 - 33019729
Alignment:
Q  195 ataaaaaatggaattatattaacaacaagagcctcgttagcacaaggcgtgcctcgaaaactcgtcaagaaacaccaaaatgtagaagtcggtacaacaa 294  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||| || |||| |||||||||||| ||||||||||||| |||| ||||    
T  33019454 ataaaaaatgtaattatattaacaacaagagcctcattagcacaaggcgtgcctcaaagactcatcaagaaacaccgaaatgtagaagtcagtactacaa 33019553  T
Q  295 caaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaa 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33019554 caaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaa 33019653  T
Q  395 agacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    |||||||||||||||||| |||| ||||||||| |||||||||||| ||||||||||||| |||||||||||||||    
T  33019654 agacaaatattttactttatcaagcaacctgggcaaaggagtaacataattattaaaacacctattgttacgttca 33019729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 198 - 470
Target Start/End: Complemental strand, 5086687 - 5086415
Alignment:
Q  198 aaaaatggaattatattaacaacaagagcctcgttagcacaaggcgtgcctcgaaaactcgtcaagaaacaccaaaatgtagaagtcggtacaacaacaa 297  Q
    |||||||||||||||||||||||||||| ||| |||||||||||| |||||| || | || ||||| |  | ||||||  ||||||| ||||||||||||    
T  5086687 aaaaatggaattatattaacaacaagagtctcattagcacaaggcatgcctcaaagattcctcaaggaggaacaaaattcagaagtctgtacaacaacaa 5086588  T
Q  298 aaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaaga 397  Q
    |||||||| ||||||||| |||||||||||||||| |||||||||| ||| |||| ||||||| ||||||| ||||||||||||||||||||||||| ||    
T  5086587 aaccaacttagccaatactcaaacattgtaaaggggttgaccaccatctaatagtgccaaacaaaaaagaggcttttctagctttcaaccaacctaagga 5086488  T
Q  398 caaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    | |||||||||||||||| | ||||||||| |||||||||||| |||||||||||||  ||||||||||||||    
T  5086487 cgaatattttactttgtcgagcaacctgggcaaaggagtaacataattattaaaacacttattgttacgttca 5086415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 286 - 470
Target Start/End: Complemental strand, 504107 - 503923
Alignment:
Q  286 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 385  Q
    |||||||| ||||||||| | |||||||||||||||||||||| ||| ||||||||||||||  ||||||||||| ||||||   |||||||||||||||    
T  504107 gtacaacagcaaaaccaagttagccaatacccaaacattgtaacgggtttgaccaccaactaaaagtaccaaacaaaaaagaagtttttctagctttcaa 504008  T
Q  386 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    ||||||||||||||||||||||||||| |||| ||||||||| |||||||||| ||||| ||| |||||  |||| |||||||||    
T  504007 ccaacctaaagacaaatattttactttatcaagcaacctgggtaaaggagtaatagaatcattgaaacacatattattacgttca 503923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 286 - 470
Target Start/End: Original strand, 8263810 - 8263994
Alignment:
Q  286 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 385  Q
    |||||||| ||||||||| | |||||||||||||||||||||| ||| ||||||||||||||  |||||||||||  |||||  ||||||||||||||||    
T  8263810 gtacaacagcaaaaccaagttagccaatacccaaacattgtaacgggtttgaccaccaactaaaagtaccaaacaataaagaagcttttctagctttcaa 8263909  T
Q  386 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    ||||||||||||||||||||||||||| |||| ||||||||  |||||||||| ||||| ||| |||||  ||||||||||||||    
T  8263910 ccaacctaaagacaaatattttactttatcaagcaacctggataaaggagtaatagaatcattgaaacacatattgttacgttca 8263994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 286 - 470
Target Start/End: Original strand, 19227078 - 19227262
Alignment:
Q  286 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 385  Q
    |||||| ||||||| ||| | |||||||||||||||||||||| ||| ||||||||||||||  ||| ||||||| ||||||  | ||||||||||||||    
T  19227078 gtacaataacaaaaacaagttagccaatacccaaacattgtaacgggtttgaccaccaactaaaagtgccaaacaaaaaagaagcgtttctagctttcaa 19227177  T
Q  386 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    |||||||| |||||||||||| |||||||||| ||||||| | |||||||||| ||||  ||| |||||  ||||||||||||||    
T  19227178 ccaacctagagacaaatatttaactttgtcaagcaacctgagtaaaggagtaatagaagcattgaaacacatattgttacgttca 19227262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 286 - 470
Target Start/End: Original strand, 33639482 - 33639666
Alignment:
Q  286 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 385  Q
    |||||||||||||| ||| | |||| ||||||||||||||||| ||| ||||||||||||||  |||  |||||| ||||||  | ||||||||||||||    
T  33639482 gtacaacaacaaaaacaagttagccgatacccaaacattgtaacgggtttgaccaccaactaaaagtgtcaaacaaaaaagaagcgtttctagctttcaa 33639581  T
Q  386 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    ||||||||  ||||||||||| |||||||||| ||||||||| |||||||||| ||||| ||| |||||  ||||||||||||||    
T  33639582 ccaacctagggacaaatatttaactttgtcaagcaacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttca 33639666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 307 - 359
Target Start/End: Complemental strand, 1334845 - 1334793
Alignment:
Q  307 agccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaac 359  Q
    ||||||||||||||||||| ||||||||||||||||| |||| ||||||||||    
T  1334845 agccaatacccaaacattgaaaagggcttgaccaccacctatcagtaccaaac 1334793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 15644274 - 15644216
Alignment:
Q  198 aaaaatggaattatattaacaacaagagcctcgttagcacaaggcgtgcctcgaaaact 256  Q
    |||||||||||||||||||||||||||| ||| |||||||||| |||||| | ||||||    
T  15644274 aaaaatggaattatattaacaacaagagtctcattagcacaagacgtgccacaaaaact 15644216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 504179 - 504130
Alignment:
Q  198 aaaaatggaattatattaacaacaagagcctcgttagcacaaggcgtgcc 247  Q
    |||||||||||||||||||||||||||| |||  ||||||||| ||||||    
T  504179 aaaaatggaattatattaacaacaagagtctcaatagcacaagacgtgcc 504130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 8263735 - 8263787
Alignment:
Q  195 ataaaaaatggaattatattaacaacaagagcctcgttagcacaaggcgtgcc 247  Q
    ||||||||||| ||||||||||||||||||| |||  ||||||||| ||||||    
T  8263735 ataaaaaatgggattatattaacaacaagagtctcaatagcacaagacgtgcc 8263787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 426
Target Start/End: Complemental strand, 17874347 - 17874237
Alignment:
Q  316 ccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgtc 415  Q
    |||||||||| || || ||||| |||||  |||  || |||||| |||||   |||||| | |||||||||||  |||||||||||||||| ||||| ||    
T  17874347 ccaaacattggaagggacttgagcaccacttatatgtgccaaacctaaaaacaacttttttggctttcaaccaggctaaagacaaatatttaactttatc 17874248  T
Q  416 aaacaacctgg 426  Q
     ||||||||||    
T  17874247 taacaacctgg 17874237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 401
Target Start/End: Original strand, 33745709 - 33745774
Alignment:
Q  336 gaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaa 401  Q
    |||||||||||| |||| ||||||| |||   ||| ||| ||||||||||||| ||||||||||||    
T  33745709 gaccaccaactagtagtcccaaacacaaacatgacatttttagctttcaaccaccctaaagacaaa 33745774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 198 - 451
Target Start/End: Original strand, 7178362 - 7178615
Alignment:
Q  198 aaaaatggaattatattaacaacaagagcctcgttagcacaaggcgtgcctcgaaaactcgtcaagaaacaccaaaatgtagaagtcggtacaacaacaa 297  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||| || ||||||||||||||||||||| ||||||||| |||||||||| |    
T  7178362 aaaaatggaattatattaacaacaagagtctcattagcacaaggcgtgcctcaaagactcgtcaagaaacaccaaaaagtagaagtcagtacaacaacga 7178461  T
Q  298 aaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaaga 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  7178462 aaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtgccaaatataaaagagacttttctagctttcaaccaacctaaaga 7178561  T
Q  398 caaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaa 451  Q
    || ||||||||||||||||| ||||||||| |||||||||||| ||||||||||    
T  7178562 cagatattttactttgtcaagcaacctgggcaaaggagtaacataattattaaa 7178615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 286 - 470
Target Start/End: Complemental strand, 25505569 - 25505385
Alignment:
Q  286 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 385  Q
    |||||||||||||||||| | |||||||||||||||||||||| ||| ||||||||||||||  ||| ||||||| ||||||  | ||||||||||||||    
T  25505569 gtacaacaacaaaaccaagttagccaatacccaaacattgtaacgggtttgaccaccaactaaaagtgccaaacaaaaaagaagcgtttctagctttcaa 25505470  T
Q  386 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    ||||| ||||||||||||||||||||| |||| ||||||||| |||||||||| ||||| ||| |||||  |||||||| |||||    
T  25505469 ccaacttaaagacaaatattttactttatcaagcaacctgggtaaaggagtaatagaatcattgaaacacatattgttatgttca 25505385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 287 - 470
Target Start/End: Original strand, 24314585 - 24314768
Alignment:
Q  287 tacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaac 386  Q
    |||||| |||||||||| | |||||||||||||||||||||| ||| |||||||||||||| |||| ||||||| ||||||   ||||||||| ||||||    
T  24314585 tacaaccacaaaaccaagttagccaatacccaaacattgtaacgggtttgaccaccaactaatagtgccaaacaaaaaagaagtttttctagccttcaac 24314684  T
Q  387 caacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    |||||||||||||||||||| ||||| |||| ||||||||| |||||||||| ||||| ||| ||| |  ||||||||||||||    
T  24314685 caacctaaagacaaatatttaactttatcaagcaacctgggtaaaggagtaatagaatcattgaaaaacatattgttacgttca 24314768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 286 - 470
Target Start/End: Complemental strand, 34709491 - 34709307
Alignment:
Q  286 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 385  Q
    |||| ||||||||||||||| || |||| |||| ||||||||||||||||||| |||| |||| ||| ||||||| |||||   ||||||||| || ||     
T  34709491 gtacgacaacaaaaccaacttagtcaatgcccagacattgtaaagggcttgacaaccacctatcagtgccaaacaaaaaagtagcttttctagtttccag 34709392  T
Q  386 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    |||||||||||||||||||||||||||||| | |||||| || |||||||||| ||||||||| ||||| || ||||||||||||    
T  34709391 ccaacctaaagacaaatattttactttgtcgagcaacctaggcaaaggagtaaaagaattattgaaacacctgttgttacgttca 34709307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 298 - 470
Target Start/End: Original strand, 43810387 - 43810558
Alignment:
Q  298 aaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaaga 397  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||| |||| |||||||| |  ||| |  |||||||||||||||||||||||||||||    
T  43810387 aaccaact-agccaatacccaaacattggaaagggcttgaccaccacctatcagtaccaagcgaaaatgtaacttttctagctttcaaccaacctaaaga 43810485  T
Q  398 caaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    ||| ||||||||||| || |||||||| || | |||||||| ||||||||| ||  | ||||| |||||||||    
T  43810486 caagtattttactttatccaacaacctaggcataggagtaatagaattattgaacaacctattattacgttca 43810558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 286 - 448
Target Start/End: Original strand, 22576394 - 22576556
Alignment:
Q  286 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 385  Q
    ||||||||||||||   | | ||||||| ||||||||||| ||||||||||||||||  |||| || |||||||  ||| | | ||||| || ||||||     
T  22576394 gtacaacaacaaaaatcaattagccaatgcccaaacattgaaaagggcttgaccaccccctatcagaaccaaacgaaaaggtggcttttttatctttcag 22576493  T
Q  386 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattatt 448  Q
    ||| |||||||| || |||||||||||||| | |||||| || | | |||||| |||||||||    
T  22576494 ccagcctaaagaaaagtattttactttgtccagcaacctaggcatatgagtaatagaattatt 22576556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 25505641 - 25505592
Alignment:
Q  198 aaaaatggaattatattaacaacaagagcctcgttagcacaaggcgtgcc 247  Q
    |||||||||||||||||||||||||||| ||| |||||||||| ||||||    
T  25505641 aaaaatggaattatattaacaacaagagtctcattagcacaagacgtgcc 25505592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 427
Target Start/End: Original strand, 41181803 - 41181915
Alignment:
Q  315 cccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgt 414  Q
    |||||| |||| || |||||||| ||||| ||||  | ||||||| |||||   || ||| | |||||||||||  ||||||||| |||||| ||||| |    
T  41181803 cccaaatattggaaggggcttgagcaccatctatctgaaccaaacctaaaaacaacctttttggctttcaaccaggctaaagacatatatttaactttat 41181902  T
Q  415 caaacaacctggg 427  Q
    | |||||||||||    
T  41181903 ctaacaacctggg 41181915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 198 - 470
Target Start/End: Complemental strand, 21439573 - 21439301
Alignment:
Q  198 aaaaatggaattatattaacaacaagagcctcgttagcacaaggcgtgcctcgaaaactcgtcaagaaacaccaaaatgtagaagtcggtacaacaacaa 297  Q
    ||||||| |||||||||||||||||||| ||| ||||| ||||||||||||| || ||||||||||||||||||||| ||||||||| |||||||||| |    
T  21439573 aaaaatgaaattatattaacaacaagagtctcattagcgcaaggcgtgcctcaaagactcgtcaagaaacaccaaaaagtagaagtcagtacaacaacga 21439474  T
Q  298 aaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaaga 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||| ||    
T  21439473 aaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtgccaagcataaaagagacttttctacctttcaaccaacctaagga 21439374  T
Q  398 caaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    |||||||||||||||||||| ||||||||| |||||||| |||  |||||||||||| |||||||||||||||    
T  21439373 caaatattttactttgtcaagcaacctgggcaaaggagtcacatgattattaaaacacctattgttacgttca 21439301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 243 - 468
Target Start/End: Original strand, 6970526 - 6970751
Alignment:
Q  243 gtgcctcgaaaactcgtcaagaaacaccaaaatgtagaagtcggtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccacc 342  Q
    ||||||| || ||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6970526 gtgcctcaaagactcgtccagaaacaccaaaatgtagaagtcagtacaacaacaaaatcaactcagccaatacccaaacattgtaaagggcttgaccacc 6970625  T
Q  343 aactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacaga 442  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| |||| |||| ||||||||||||||    
T  6970626 aactattagtaccaaacataaaagaaacttttctaactttcaaccgacctaaagacaaatattttactttgtcaagcaacttgggcaaaggagtaacaga 6970725  T
Q  443 attattaaaacatctattgttacgtt 468  Q
    ||||||||||||  ||||||||||||    
T  6970726 attattaaaacacttattgttacgtt 6970751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 50 - 279
Target Start/End: Original strand, 6970262 - 6970490
Alignment:
Q  50 cttctatcctagtactatgtataaaggccaaacaaaattgaagttgtgaatatctccgccaccaccaggtctatttataattagctgatgtcatacaaca 149  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6970262 cttctatcctaggactatgtataaaggccaaacaaaattgaagttgtgaatatctccgccaccaccaggtctatttataattagctgatgtcatacaaca 6970361  T
Q  150 aagaaaggtcaaactttaattaaaaaataattannnnnnnnaacgataaaaaatggaattatattaacaacaagagcctcgttagcacaaggcgtgcctc 249  Q
    |||||||||||||||||||||||||||| |||         ||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6970362 aagaaaggtcaaactttaattaaaaaat-atttttttttttaacaatcaaaaatgaaattatattaacaacaagagcctcgttagcacaaggcgtgcctc 6970460  T
Q  250 gaaaactcgtcaagaaacaccaaaatgtag 279  Q
     || ||||||| ||||||||||||||||||    
T  6970461 aaagactcgtccagaaacaccaaaatgtag 6970490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 286 - 470
Target Start/End: Original strand, 25923635 - 25923819
Alignment:
Q  286 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 385  Q
    |||||||| ||||||||| | |||||||||||||||||||||| ||| ||||||||||||||  ||||||||||| ||||||  |||||||||||||||     
T  25923635 gtacaacagcaaaaccaagttagccaatacccaaacattgtaacgggtttgaccaccaactaaaagtaccaaacaaaaaagaagcttttctagctttcag 25923734  T
Q  386 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    ||||||||||||||||||||||||||| |||| ||||||||| |||||||||| ||||| ||| |||||  ||||||||||||||    
T  25923735 ccaacctaaagacaaatattttactttatcaagcaacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttca 25923819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 286 - 470
Target Start/End: Complemental strand, 34519180 - 34518996
Alignment:
Q  286 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 385  Q
    |||||||||||||| ||| | |||||||||||||||||||||| ||| ||||||||||||||  ||| ||||||| ||||||  | ||||||||||||||    
T  34519180 gtacaacaacaaaaacaagttagccaatacccaaacattgtaacgggtttgaccaccaactaaaagtgccaaacaaaaaagaagcgtttctagctttcaa 34519081  T
Q  386 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    |||||||| |||||||||||| |||||||||| ||||||||| |||||||||| ||||| ||| |||||  ||||||||||||||    
T  34519080 ccaacctagagacaaatatttaactttgtcaagcaacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttca 34518996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 286 - 470
Target Start/End: Original strand, 17804510 - 17804694
Alignment:
Q  286 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 385  Q
    |||||||||||||| ||| | |||||||||||||||||||||| ||| ||||||||||||||  ||||||||||| ||||||  ||||||||| ||||||    
T  17804510 gtacaacaacaaaatcaagttagccaatacccaaacattgtaacgggtttgaccaccaactaaaagtaccaaacaaaaaagaagcttttctagttttcaa 17804609  T
Q  386 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    ||||||||||||||||||||||||||| |||| ||| ||||| | |||| ||| ||||| ||| |||||  ||||||||||||||    
T  17804610 ccaacctaaagacaaatattttactttatcaagcaatctgggtataggaataatagaatcattgaaacacatattgttacgttca 17804694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 286 - 470
Target Start/End: Original strand, 45987614 - 45987798
Alignment:
Q  286 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 385  Q
    |||||||||||||| ||| | |||||||||||||||||| ||| ||| ||||||||||||||  ||| ||||||| ||||||  | ||||||||||||||    
T  45987614 gtacaacaacaaaaacaagttagccaatacccaaacattataacgggtttgaccaccaactaaaagtgccaaacaaaaaagaagcgtttctagctttcaa 45987713  T
Q  386 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    |||||||| |||||||||||| |||||||||| ||||||||| |||||||||| ||||| ||| |||||  ||||||||||||||    
T  45987714 ccaacctagagacaaatatttaactttgtcaagcaacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttca 45987798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 307 - 448
Target Start/End: Complemental strand, 27942049 - 27941908
Alignment:
Q  307 agccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaa-agagacttttctagctttcaaccaacctaaagacaaatatt 405  Q
    ||||||||||||||||||| ||||||||||||||||| |||| ||||||||||  ||| | || ||||| |||||||||||||| |||||||||| ||||    
T  27942049 agccaatacccaaacattgaaaagggcttgaccaccacctatcagtaccaaacgaaaatatag-cttttttagctttcaaccaagctaaagacaagtatt 27941951  T
Q  406 ttactttgtcaaacaacctggggaaaggagtaacagaattatt 448  Q
    |||||||||| |||||||| || | |||||||| |||||||||    
T  27941950 ttactttgtccaacaacctaggcataggagtaatagaattatt 27941908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 307 - 470
Target Start/End: Original strand, 7377315 - 7377478
Alignment:
Q  307 agccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattt 406  Q
    ||||||||||||||||||| ||||||||||||||||| |||| ||||||||||  ||| | | | ||| || |||||| ||||||||||||||| |||||    
T  7377315 agccaatacccaaacattggaaagggcttgaccaccacctatcagtaccaaacgaaaatgtggcatttttaactttcagccaacctaaagacaagtattt 7377414  T
Q  407 tactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    ||||||||| | |||||| || | |||||||| | ||||||| ||  | |||||||||||||||    
T  7377415 tactttgtccagcaacctaggtataggagtaatacaattattgaacaacctattgttacgttca 7377478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 311 - 450
Target Start/End: Complemental strand, 39060293 - 39060154
Alignment:
Q  311 aatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttact 410  Q
    |||||| |||||||| |||||| |||||||||| |||| ||||||||||  |||  | |||||| ||| |||||||||| |||||||||| |||||||||    
T  39060293 aatacctaaacattgaaaagggtttgaccaccacctatcagtaccaaacgaaaataaaacttttttagttttcaaccaagctaaagacaagtattttact 39060194  T
Q  411 ttgtcaaacaacctggggaaaggagtaacagaattattaa 450  Q
    ||||| |||||||| || | |||||||| | |||||||||    
T  39060193 ttgtccaacaacctaggcataggagtaataaaattattaa 39060154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 307 - 448
Target Start/End: Complemental strand, 33796922 - 33796781
Alignment:
Q  307 agccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattt 406  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||  |||||||||| ||| | | ||||| || ||||||  || ||||||||||| |||||    
T  33796922 agccaatacccaaacattgaaaagggcttgaacaccacctatctgtaccaaacaaaaaggtggcttttttaactttcagtcagcctaaagacaagtattt 33796823  T
Q  407 tactttgtcaaacaacctggggaaaggagtaacagaattatt 448  Q
    |||| |||| | |||||| || | |||||||| |||||||||    
T  33796822 tactatgtccagcaacctaggcataggagtaatagaattatt 33796781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 451
Target Start/End: Complemental strand, 2009372 - 2009239
Alignment:
Q  318 aaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgtcaa 417  Q
    |||||||| |||||| |||||||||| |||| | || |||||  ||| | | ||||| ||||||||| ||| || |||||||| ||||| |||||||| |    
T  2009372 aaacattggaaagggtttgaccaccacctatcaatatcaaacgaaaaggtggcttttttagctttcagccagccaaaagacaagtatttcactttgtcca 2009273  T
Q  418 acaacctggggaaaggagtaacagaattattaaa 451  Q
     |||||| || | |||||||  ||||||||||||    
T  2009272 gcaacctaggcataggagtactagaattattaaa 2009239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 427
Target Start/End: Original strand, 5356599 - 5356700
Alignment:
Q  327 aaagggcttgaccaccaactattagtaccaaacataaaagagacttttctag-ctttcaaccaacctaaagacaaatattttactttgtcaaacaacctg 425  Q
    ||||||||||||||||| | || ||||||||||  ||||  | ||||| | | | ||||||||||||| |||||| |||||||||||||| |||||||||    
T  5356599 aaagggcttgaccaccacccatcagtaccaaacgaaaaaatggctttttttggccttcaaccaacctagagacaagtattttactttgtccaacaacctg 5356698  T
Q  426 gg 427  Q
    ||    
T  5356699 gg 5356700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 6970200 - 6970234
Alignment:
Q  18 ctaacttcattcttcctactgttgccattgttctt 52  Q
    |||||||||||||||||||||||||||||||||||    
T  6970200 ctaacttcattcttcctactgttgccattgttctt 6970234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 6918691 - 6918722
Alignment:
Q  18 ctaacttcattcttcctactgttgccattgtt 49  Q
    ||||||||||||||||||||||||||||||||    
T  6918691 ctaacttcattcttcctactgttgccattgtt 6918722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 6923456 - 6923425
Alignment:
Q  18 ctaacttcattcttcctactgttgccattgtt 49  Q
    ||||||||||||||||||||||||||||||||    
T  6923456 ctaacttcattcttcctactgttgccattgtt 6923425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 45987541 - 45987583
Alignment:
Q  198 aaaaatggaattatattaacaacaagagcctcgttagcacaag 240  Q
    |||||||||||||||||||||||||||| |||  |||||||||    
T  45987541 aaaaatggaattatattaacaacaagagtctcaatagcacaag 45987583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 6922874 - 6922903
Alignment:
Q  18 ctaacttcattcttcctactgttgccattg 47  Q
    ||||||||||||||||||||||||||||||    
T  6922874 ctaacttcattcttcctactgttgccattg 6922903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 6955338 - 6955309
Alignment:
Q  18 ctaacttcattcttcctactgttgccattg 47  Q
    ||||||||||||||||||||||||||||||    
T  6955338 ctaacttcattcttcctactgttgccattg 6955309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 427
Target Start/End: Complemental strand, 7459155 - 7459106
Alignment:
Q  378 gctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggg 427  Q
    |||||||||||  |||||||||||||||| ||||| || |||||||||||    
T  7459155 gctttcaaccaggctaaagacaaatatttaactttatctaacaacctggg 7459106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 25923563 - 25923612
Alignment:
Q  198 aaaaatggaattatattaacaacaagagcctcgttagcacaaggcgtgcc 247  Q
    |||||||| ||||||||||||||||||| |||  ||||||||| ||||||    
T  25923563 aaaaatgggattatattaacaacaagagtctcaatagcacaagacgtgcc 25923612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 195 - 470
Target Start/End: Original strand, 15017148 - 15017424
Alignment:
Q  195 ataaaaaatggaattatattaacaacaagagcctcgttagcacaaggcgtgcctcgaaaactcgtcaagaaa-caccaaaatgtagaagtcggtacaaca 293  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || ||||||||||||| |||||||| ||||||||| ||||||||    
T  15017148 ataaaaaatggaattatattaacaacaagagtctcattagcacaaggcgtgcctcaaagactcgtcaagaaaacaccaaaaagtagaagtcagtacaaca 15017247  T
Q  294 acaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaaccta 393  Q
    || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||    
T  15017248 acgaaaccaactcaaccaatacccaaacattgtaaagggcttgaccaccaactattagtgtcaaacataaaagagacttttctaactttcaaccaaccta 15017347  T
Q  394 aagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    | |||||||||||||||||||||| ||||||||| |||||||| |||  |||||||||||| |||||||||||||||    
T  15017348 aggacaaatattttactttgtcaagcaacctgggcaaaggagtcacatgattattaaaacacctattgttacgttca 15017424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 198 - 470
Target Start/End: Original strand, 5325239 - 5325507
Alignment:
Q  198 aaaaatggaattatattaacaacaagagcctcgttagcacaaggcgtgcctcgaaaactcgtcaagaaacaccaaaatgtagaagtcggtacaacaacaa 297  Q
    ||||||| |||||||||||||||||||| ||| ||||||||||||||||||| || ||||||||||||||||||||| ||||||||    |||||||| |    
T  5325239 aaaaatgaaattatattaacaacaagagtctcattagcacaaggcgtgcctcaaagactcgtcaagaaacaccaaaaagtagaagt----acaacaacga 5325334  T
Q  298 aaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaaga 397  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||    
T  5325335 aaccaactcagccaatatccaaacattgtaaagggcttgaccaccaactattagtgccaaacataaaagagacttttctaactttcaaccaacctaagga 5325434  T
Q  398 caaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    || ||||||||||||||||| |||||| || |||| ||||||  ||||||||||||| |||||||||||||||    
T  5325435 cagatattttactttgtcaagcaacctcggcaaagaagtaacgtaattattaaaacacctattgttacgttca 5325507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 286 - 454
Target Start/End: Complemental strand, 10978581 - 10978412
Alignment:
Q  286 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaa-gagacttttctagctttca 384  Q
    |||||||| ||||| ||| | ||||||||| |||||||||||| ||| ||||||||||||||  | || |||||| |||| ||  |||||||||||||||    
T  10978581 gtacaacagcaaaaacaagttagccaatactcaaacattgtaacgggtttgaccaccaactaaaaatatcaaacaaaaaaagaagcttttctagctttca 10978482  T
Q  385 accaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaaca 454  Q
    |||||||||||||||||||||||||||| |||| ||||||||| |||||||||| ||||| ||| |||||    
T  10978481 accaacctaaagacaaatattttactttatcaagcaacctgggtaaaggagtaatagaatcattgaaaca 10978412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 327 - 470
Target Start/End: Complemental strand, 22725969 - 22725826
Alignment:
Q  327 aaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgtcaaacaacctgg 426  Q
    ||||||||||||||||| ||||  |||||| ||||||| | | | ||| | ||||||| ||| |||||||||||||||||||||||||  | ||||||||    
T  22725969 aaagggcttgaccaccacctatcggtaccatacataaaggtggcctttttggctttcagccatcctaaagacaaatattttactttgttcagcaacctgg 22725870  T
Q  427 ggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
      | |||||||| || |||||||||  | |||||||||| ||||    
T  22725869 aaataggagtaatagtattattaaataacctattgttacattca 22725826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 427
Target Start/End: Original strand, 1379738 - 1379787
Alignment:
Q  378 gctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggg 427  Q
    |||||||||||| ||||||||| |||||| |||||||| |||| ||||||    
T  1379738 gctttcaaccaagctaaagacatatatttaactttgtctaacagcctggg 1379787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 198 - 470
Target Start/End: Complemental strand, 20894418 - 20894146
Alignment:
Q  198 aaaaatggaattatattaacaacaagagcctcgttagcacaaggcgtgcctcgaaaactcgtcaagaaacaccaaaatgtagaagtcggtacaacaacaa 297  Q
    |||||||||||||||||||||||||||| ||| |||||| |||||||||||| || ||||||||||||||||||||| ||||||||| |||||||||| |    
T  20894418 aaaaatggaattatattaacaacaagagtctcattagcataaggcgtgcctcaaagactcgtcaagaaacaccaaaaagtagaagtcagtacaacaacga 20894319  T
Q  298 aaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaaga 397  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||| ||    
T  20894318 aaccatctcagccaatacccaaacattgtaaagggcttgaccaccaactattagtgccaaatataaaagagacttttctagctttcaaccaacttaagga 20894219  T
Q  398 caaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
     | ||||||||||||||||| ||||||||| ||||||||||||   |||||||||||  ||||||||||||||    
T  20894218 tagatattttactttgtcaagcaacctgggcaaaggagtaacatggttattaaaacacttattgttacgttca 20894146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 195 - 470
Target Start/End: Original strand, 51144538 - 51144813
Alignment:
Q  195 ataaaaaatggaattatattaacaacaagagcctcgttagcacaaggcgtgcctcgaaaactcgtcaagaaacaccaaaatgtagaagtcggtacaacaa 294  Q
    ||||||||||||||||||| |||||| |||| ||| |||||||||| |||||| | || |||| |||||||||| |||| |  || ||||  ||||||||    
T  51144538 ataaaaaatggaattatataaacaaccagagtctcattagcacaagacgtgccaccaagactcctcaagaaacaacaaagttcagtagtctttacaacaa 51144637  T
Q  295 caaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaa 394  Q
    ||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||    ||||||||||||||||||||||||    
T  51144638 caaaaccaaattagccaatacccagacattgtaaagggcttgaccaccaactattagtgccaaacaaaaaagtagtttttctagctttcaaccaacctaa 51144737  T
Q  395 agacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    ||||||||||||||||||| | | ||||||||| |||||||||| ||||||||| ||||| |||||||||||||||    
T  51144738 agacaaatattttactttgccgagcaacctgggcaaaggagtaatagaattattgaaacacctattgttacgttca 51144813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 298 - 422
Target Start/End: Complemental strand, 54558992 - 54558869
Alignment:
Q  298 aaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaaga 397  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||| |||| |||||| |||  ||| |  |||||| ||||||||||||||| ||||||    
T  54558992 aaccaact-agccaatacccaaacattggaaagggcttgaccaccacctatcagtacctaacgaaaatgtaacttttttagctttcaaccaacttaaaga 54558894  T
Q  398 caaatattttactttgtcaaacaac 422  Q
    ||||||||||||||| || ||||||    
T  54558893 caaatattttactttatctaacaac 54558869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 427
Target Start/End: Original strand, 11639559 - 11639671
Alignment:
Q  315 cccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgt 414  Q
    ||||| |||||||| || ||||| ||||| ||||  | ||||||| |||||   || ||| | |||||||||||  ||||||||| |||||| ||||| |    
T  11639559 cccaagcattgtaagggacttgaacaccacctatctgaaccaaacctaaaaaccacctttttggctttcaaccaggctaaagacatatatttaactttat 11639658  T
Q  415 caaacaacctggg 427  Q
    | |||||||||||    
T  11639659 ctaacaacctggg 11639671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 198 - 470
Target Start/End: Original strand, 30309924 - 30310194
Alignment:
Q  198 aaaaatggaattatattaacaacaagagcctcgttagcacaaggcgtgcctcgaaaactcgtcaagaaa-caccaaaatgtagaagtcggtacaacaaca 296  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||| |||||||| |||||||||  |||||||||     
T  30309924 aaaaatggaattatattaacaacaagagtctcgttagcacaaggcgtgcctcaaagactcgtcaagaaaacaccaaaaagtagaagtcaatacaacaacg 30310023  T
Q  297 aaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaag 396  Q
    | |||||||||||||||| ||||||||||||||||| |||||||||||   | ||| ||||||||||||||||||||||||||||||||||||||||| |    
T  30310024 acaccaactcagccaatatccaaacattgtaaagggtttgaccaccaa---tgagtgccaaacataaaagagacttttctagctttcaaccaacctaagg 30310120  T
Q  397 acaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    ||||||||||||||||||||| ||||||||| |||||||| | |  |||||||||||| |||||||||||||||    
T  30310121 acaaatattttactttgtcaagcaacctgggcaaaggagtcatatgattattaaaacacctattgttacgttca 30310194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 198 - 470
Target Start/End: Original strand, 19113911 - 19114184
Alignment:
Q  198 aaaaatggaattatattaacaacaagagcctcgttagcacaaggcgtgcctcgaaaactcgtcaagaaa-caccaaaatgtagaagtcggtacaacaaca 296  Q
    ||||||||||||||||||||||||||||  || |||||||||||| |||||| || ||||||||||||| |||||||| ||||||||| | ||||||||     
T  19113911 aaaaatggaattatattaacaacaagagtgtcattagcacaaggcatgcctcaaagactcgtcaagaaaacaccaaaaagtagaagtcagaacaacaacg 19114010  T
Q  297 aaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaag 396  Q
    | ||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| |||||||||||| |||||||||||||||||||||||||||| |    
T  19114011 acaccaactcagccaatactcaaacattgtaaagggcttgatcaccaactatgagtgccaaacataaaatagacttttctagctttcaaccaacctaagg 19114110  T
Q  397 acaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    ||||||||||||||||||||| ||||||||| |||||||| |||  |||||||||||| ||||||||| |||||    
T  19114111 acaaatattttactttgtcaagcaacctgggcaaaggagtcacatgattattaaaacacctattgttatgttca 19114184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 199 - 470
Target Start/End: Complemental strand, 48031804 - 48031534
Alignment:
Q  199 aaaatggaattatattaacaacaagagcctcgttagcacaaggcgtgcctcgaaaactcgtcaagaaacaccaaaatgtagaagtcggtacaacaacaaa 298  Q
    ||||||||||||||||||||||||||| |||  |||||||||||||||| | || ||| ||||||||||| |||| |  || |||   ||||||||||||    
T  48031804 aaaatggaattatattaacaacaagagtctcaatagcacaaggcgtgccacaaagactagtcaagaaacagcaaagttcaggagtatctacaacaacaaa 48031705  T
Q  299 accaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagac 398  Q
    ||||||| |||||||||||| | |||||||||| |||| |||||| |||||||| ||||| | |||||  |||||||||||||| |||||||||||||||    
T  48031704 accaacttagccaatacccagaaattgtaaagg-cttgcccaccatctattagtgccaaataaaaaagtaacttttctagcttttaaccaacctaaagac 48031606  T
Q  399 aaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    ||||||||||||||||| |  |||||||| |||||||||| ||||||||  ||||| ||||| |||||||||    
T  48031605 aaatattttactttgtcgagtaacctgggcaaaggagtaatagaattatcgaaacacctattattacgttca 48031534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 295 - 471
Target Start/End: Original strand, 7472980 - 7473156
Alignment:
Q  295 caaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaa 394  Q
    ||||||||| | |||||||||||||||||||||| ||| ||||||||||||||  ||| ||||||| ||||||  |||||||||||||||||||||||||    
T  7472980 caaaaccaagttagccaatacccaaacattgtaacgggtttgaccaccaactaaaagtgccaaacaaaaaagaagcttttctagctttcaaccaacctaa 7473079  T
Q  395 agacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttcat 471  Q
    |||||||||||||||||| |||| ||||||||| |||||||||| ||||| ||| |||||  |||||||||||||||    
T  7473080 agacaaatattttactttatcaagcaacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttcat 7473156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 286 - 470
Target Start/End: Original strand, 19644555 - 19644739
Alignment:
Q  286 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 385  Q
    |||||||||||||| ||| | |||||||||||||||||||||| ||| ||||||||||||||  | | ||||||| ||||||  | ||||||||||||||    
T  19644555 gtacaacaacaaaaacaagttagccaatacccaaacattgtaacgggtttgaccaccaactaaaaatgccaaacaaaaaagaagcgtttctagctttcaa 19644654  T
Q  386 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| ||| |||||  ||||||||||||||    
T  19644655 ccaacctaaagacaaatattttactttgtcaagcaacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttca 19644739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 286 - 470
Target Start/End: Original strand, 8934666 - 8934850
Alignment:
Q  286 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 385  Q
    |||||||||||||||||| | |||||||||||||||||| ||| ||| ||||||||||||||  ||| ||||||| ||||||  ||||||||||||||||    
T  8934666 gtacaacaacaaaaccaagttagccaatacccaaacattataacgggtttgaccaccaactaaaagttccaaacaaaaaagaagcttttctagctttcaa 8934765  T
Q  386 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    |||||||||||||||||| |||||||| |||| ||||||||| |||||||||| | ||| ||| |||||  ||||||||||||||    
T  8934766 ccaacctaaagacaaatagtttactttatcaagcaacctgggtaaaggagtaataaaatcattgaaacacatattgttacgttca 8934850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 286 - 470
Target Start/End: Complemental strand, 33988344 - 33988160
Alignment:
Q  286 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 385  Q
    |||||||||||||||||| | |||||||||||||||||||||| ||| ||||||||||| ||  ||| ||||||| ||||||  | ||||||||||||||    
T  33988344 gtacaacaacaaaaccaagttagccaatacccaaacattgtaacgggtttgaccaccaattaaaagtgccaaacaaaaaagaagcgtttctagctttcaa 33988245  T
Q  386 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    |||||||||||| ||||||||||||||||||| ||||||||| |||||||||| ||||| ||| |||||  |||| |||||||||    
T  33988244 ccaacctaaagataaatattttactttgtcaagcaacctgggtaaaggagtaatagaatcattgaaacacatattattacgttca 33988160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 307 - 470
Target Start/End: Complemental strand, 29554295 - 29554132
Alignment:
Q  307 agccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattt 406  Q
    ||||||||| ||||||||| ||||||||||||||||| |||| ||||||||||  |||  |  ||||| |||||||||||||| |||||||||| |||||    
T  29554295 agccaatactcaaacattgaaaagggcttgaccaccacctatcagtaccaaacgaaaataaagcttttttagctttcaaccaagctaaagacaagtattt 29554196  T
Q  407 tactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    ||||||||| |||||||| || | |||||||| ||||||||| ||  | ||||| |||||||||    
T  29554195 tactttgtccaacaacctaggcataggagtaatagaattattgaacaacctattattacgttca 29554132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 286 - 407
Target Start/End: Original strand, 23119000 - 23119121
Alignment:
Q  286 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 385  Q
    ||||||||||||||||||   |||||||||||| ||||||||| ||| ||||||||||||||  ||||||||||| |||| |   |||||||||||||||    
T  23119000 gtacaacaacaaaaccaagctagccaatacccagacattgtaacgggtttgaccaccaactaaaagtaccaaacaaaaaaaaagtttttctagctttcaa 23119099  T
Q  386 ccaacctaaagacaaatatttt 407  Q
    ||||||||||||||||||||||    
T  23119100 ccaacctaaagacaaatatttt 23119121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 315 - 470
Target Start/End: Original strand, 40150183 - 40150338
Alignment:
Q  315 cccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgt 414  Q
    ||||||||||| |||||| | |||||||| ||||| ||  |||||||||| | ||||||| | ||||||| |||||||| |||||| ||||||||||| |    
T  40150183 cccaaacattgaaaagggttcgaccaccacctatttgtgtcaaacataaatgtgacttttttggctttcagccaacctagagacaagtattttactttat 40150282  T
Q  415 caaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    | |  | |||| | | |||||||| || |||||||||  | |||||||||||||||    
T  40150283 ccagaagcctgagaataggagtaatagcattattaaacaacctattgttacgttca 40150338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 333 - 427
Target Start/End: Complemental strand, 10563838 - 10563744
Alignment:
Q  333 cttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggg 427  Q
    ||||| ||||||||||  ||||||||| |||||   |||||| | |||||||||||  |||||||||||||||| ||||| || |||||||||||    
T  10563838 cttgagcaccaactatctgtaccaaacctaaaaacaactttttttgctttcaaccaggctaaagacaaatatttaactttatctaacaacctggg 10563744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 33988416 - 33988367
Alignment:
Q  198 aaaaatggaattatattaacaacaagagcctcgttagcacaaggcgtgcc 247  Q
    |||||||||||||||||||||||||||| ||| |||||||||| ||||||    
T  33988416 aaaaatggaattatattaacaacaagagtctcattagcacaagacgtgcc 33988367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 49926590 - 49926538
Alignment:
Q  195 ataaaaaatggaattatattaacaacaagagcctcgttagcacaaggcgtgcc 247  Q
    ||||||||| ||||||||||||||||||||| ||| |||||||||| ||||||    
T  49926590 ataaaaaatagaattatattaacaacaagagtctcattagcacaagacgtgcc 49926538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 347
Target Start/End: Original strand, 23657237 - 23657298
Alignment:
Q  286 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaacta 347  Q
    ||||||||||||||||||   |||||||||| | ||||||||| ||| ||||||||||||||    
T  23657237 gtacaacaacaaaaccaagctagccaatacctagacattgtaacgggtttgaccaccaacta 23657298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 7472897 - 7472949
Alignment:
Q  195 ataaaaaatggaattatattaacaacaagagcctcgttagcacaaggcgtgcc 247  Q
    |||||||||||||||||||||| |||||||| |||  ||||||||| ||||||    
T  7472897 ataaaaaatggaattatattaataacaagagtctcaatagcacaagacgtgcc 7472949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 427
Target Start/End: Original strand, 18935261 - 18935373
Alignment:
Q  315 cccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgt 414  Q
    ||||||||||| || || ||||| ||||||||||  ||||||||| |||||   || ||| | |||||||||||  ||||||||  |||||| ||||| |    
T  18935261 cccaaacattgaaagggacttgaacaccaactatctgtaccaaacctaaaaacaacatttttggctttcaaccaggctaaagacttatatttaactttat 18935360  T
Q  415 caaacaacctggg 427  Q
    | |||||||||||    
T  18935361 ctaacaacctggg 18935373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 427
Target Start/End: Original strand, 53779674 - 53779750
Alignment:
Q  351 gtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggg 427  Q
    ||||||||| |||||   |||||| | |||||||||||  |||||||||||||||| ||||| || |||||||||||    
T  53779674 gtaccaaacctaaaaacaacttttttggctttcaaccaggctaaagacaaatatttaactttatctaacaacctggg 53779750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 421
Target Start/End: Original strand, 3861224 - 3861274
Alignment:
Q  371 ttttctagctttcaaccaacctaaagacaaatattttactttgtcaaacaa 421  Q
    |||| ||||||||| ||| ||||||||||||||||||||||| || |||||    
T  3861224 ttttttagctttcatccagcctaaagacaaatattttactttatccaacaa 3861274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 421
Target Start/End: Original strand, 3869981 - 3870031
Alignment:
Q  371 ttttctagctttcaaccaacctaaagacaaatattttactttgtcaaacaa 421  Q
    |||| ||||||||| ||| ||||||||||||||||||||||| || |||||    
T  3869981 ttttttagctttcatccagcctaaagacaaatattttactttatccaacaa 3870031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 19644483 - 19644525
Alignment:
Q  198 aaaaatggaattatattaacaacaagagcctcgttagcacaag 240  Q
    |||||||||||||||||||||||||||| |||  |||||||||    
T  19644483 aaaaatggaattatattaacaacaagagtctcaatagcacaag 19644525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 427
Target Start/End: Complemental strand, 29213509 - 29213416
Alignment:
Q  333 cttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggg 427  Q
    ||||| ||||| ||||  ||||||||| ||||| | |||||| | ||||||||| |  |||||||||||||||| ||||| || |||||||||||    
T  29213509 cttgagcaccacctatctgtaccaaacctaaaaca-acttttttggctttcaactaggctaaagacaaatatttaactttatctaacaacctggg 29213416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 8934594 - 8934643
Alignment:
Q  198 aaaaatggaattatattaacaacaagagcctcgttagcacaaggcgtgcc 247  Q
    ||||||||||||||||||||||||| || |||  ||||||||| ||||||    
T  8934594 aaaaatggaattatattaacaacaatagtctcaatagcacaagacgtgcc 8934643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 23118928 - 23118977
Alignment:
Q  198 aaaaatggaattatattaacaacaagagcctcgttagcacaaggcgtgcc 247  Q
    |||||||| ||||||||||||||||||| |||  ||||||||| ||||||    
T  23118928 aaaaatgggattatattaacaacaagagtctcaatagcacaagacgtgcc 23118977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 23657165 - 23657214
Alignment:
Q  198 aaaaatggaattatattaacaacaagagcctcgttagcacaaggcgtgcc 247  Q
    |||||||| ||||||||||||||||||| |||  ||||||||| ||||||    
T  23657165 aaaaatgggattatattaacaacaagagtctcaatagcacaagacgtgcc 23657214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 427
Target Start/End: Original strand, 42777894 - 42777943
Alignment:
Q  378 gctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggg 427  Q
    |||||||||||  ||||||||| |||||| |||||||| |||||||||||    
T  42777894 gctttcaaccaggctaaagacatatatttgactttgtctaacaacctggg 42777943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 427
Target Start/End: Complemental strand, 12881232 - 12881120
Alignment:
Q  315 cccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgt 414  Q
    ||||| ||||| || || ||||| ||||| ||||  | ||||||| |||||   |||||| | |||||||||||  ||||||||| |||||| ||||| |    
T  12881232 cccaagcattggaagggacttgagcaccacctatctgaaccaaacctaaaaacaacttttttggctttcaaccaggctaaagacatatatttaactttat 12881133  T
Q  415 caaacaacctggg 427  Q
    | |||||||||||    
T  12881132 ctaacaacctggg 12881120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 157; Significance: 3e-83; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 199 - 470
Target Start/End: Complemental strand, 11575356 - 11575085
Alignment:
Q  199 aaaatggaattatattaacaacaagagcctcgttagcacaaggcgtgcctcgaaaactcgtcaagaaa-caccaaaatgtagaagtcggtacaacaacaa 297  Q
    ||||||||||||||||||||||||||| ||| ||||||||| ||||||||| || ||||||||| ||| |||||||| ||||||||| |||||||||| |    
T  11575356 aaaatggaattatattaacaacaagagtctcattagcacaaagcgtgcctcaaatactcgtcaacaaaacaccaaaaagtagaagtcagtacaacaacga 11575257  T
Q  298 aaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaaga 397  Q
     ||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| ||||||||||||||||||||||| |||| ||    
T  11575256 caccaactaagccaatacccaaacattgtaaagggcttgaccaccaactatgagtgccaaacat-aaatagacttttctagctttcaaccaatctaagga 11575158  T
Q  398 caaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    ||||||||||||||||||||  || ||||| ||| |||| |||  |||||||||||| |||||||||||||||    
T  11575157 caaatattttactttgtcaagtaatctgggcaaacgagtcacatgattattaaaacacctattgttacgttca 11575085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 287 - 470
Target Start/End: Complemental strand, 22095825 - 22095642
Alignment:
Q  287 tacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaac 386  Q
    |||| |||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||  |||||| || ||   |||||||||||||||||    
T  22095825 tacaccaacaaaaccaaattagccaatacccagacattgtaaagggcttgaccaccaactattagtgtcaaacaaaagagtagcttttctagctttcaac 22095726  T
Q  387 caacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    ||||||||||||||||||||||||||||| | ||||||||  |||||| ||| ||||||||| ||||| |||||||||||||||    
T  22095725 caacctaaagacaaatattttactttgtcgagcaacctggacaaaggaataatagaattattgaaacacctattgttacgttca 22095642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 385 - 470
Target Start/End: Complemental strand, 5415622 - 5415537
Alignment:
Q  385 accaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    ||||||||||| |||||||||||||||| |||| ||||||||| |||||||||| ||||| ||| |||||  ||||||||||||||    
T  5415622 accaacctaaacacaaatattttactttatcaagcaacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttca 5415537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 286 - 470
Target Start/End: Complemental strand, 3727950 - 3727766
Alignment:
Q  286 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 385  Q
    |||||||||||||| | | | ||||||| | || |||  | |||||| |||||||||| |||| |||||||||   ||| | | |||| |||||||||||    
T  3727950 gtacaacaacaaaaaccaattagccaatgctcatacaaagaaaagggtttgaccaccacctatcagtaccaaaaggaaaggtggctttactagctttcaa 3727851  T
Q  386 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    ||| |||||  |||| |||||||||||||| | ||||||  | | |||||||| || |||||| ||  | |||||||||||||||    
T  3727850 ccatcctaacaacaagtattttactttgtccatcaacctaagcataggagtaatagcattattgaataacctattgttacgttca 3727766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 359
Target Start/End: Complemental strand, 5415718 - 5415650
Alignment:
Q  291 acaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaac 359  Q
    |||||||||| || | |||||||||||||||||||||| ||| ||||||||||||||  ||| ||||||    
T  5415718 acaacaaaacaaagttagccaatacccaaacattgtaacgggtttgaccaccaactaaaagtgccaaac 5415650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 22095944 - 22095895
Alignment:
Q  198 aaaaatggaattatattaacaacaagagcctcgttagcacaaggcgtgcc 247  Q
    |||||||||||||||| |||||| |||| ||| |||||||||||||||||    
T  22095944 aaaaatggaattatataaacaaccagagtctcattagcacaaggcgtgcc 22095895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 427
Target Start/End: Original strand, 40089995 - 40090044
Alignment:
Q  378 gctttcaaccaacctaaagacaaatattttactttgtcaaacaacctggg 427  Q
    |||||||||||| ||||||||| |||||| ||||| || |||||||||||    
T  40089995 gctttcaaccaagctaaagacatatatttgactttatctaacaacctggg 40090044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 6e-69; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 198 - 362
Target Start/End: Original strand, 13909104 - 13909268
Alignment:
Q  198 aaaaatggaattatattaacaacaagagcctcgttagcacaaggcgtgcctcgaaaactcgtcaagaaacaccaaaatgtagaagtcggtacaacaacaa 297  Q
    ||||||| |||||||||||||||||||||||  ||||||||||||||||||| || |||| |||||||||||| ||||||||||||| ||||||||||||    
T  13909104 aaaaatgaaattatattaacaacaagagccttattagcacaaggcgtgcctcaaagactcatcaagaaacaccgaaatgtagaagtcagtacaacaacaa 13909203  T
Q  298 aaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacata 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13909204 aaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacata 13909268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 286 - 470
Target Start/End: Complemental strand, 4988641 - 4988457
Alignment:
Q  286 gtacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaa 385  Q
    |||||| ||||||| ||| | |||||||||||||||||||||| ||| ||||||||||||||  |||  |||||| ||||||  | ||||||||||||||    
T  4988641 gtacaataacaaaaacaagttagccaatacccaaacattgtaacgggtttgaccaccaactaaaagtgtcaaacaaaaaagaagcgtttctagctttcaa 4988542  T
Q  386 ccaacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||  || |||||  ||||||||||||||    
T  4988541 ccaacctaaagacaaatattttactttgtcaagcaacctgggtaaaggagtaatagaatcgttgaaacacatattgttacgttca 4988457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 287 - 470
Target Start/End: Complemental strand, 36319065 - 36318882
Alignment:
Q  287 tacaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaac 386  Q
    ||||||| ||||||||| | |||||||||| ||||||||||||||| ||||||||||||||  | ||||||||| |||||| |||||||||||||||| |    
T  36319065 tacaacagcaaaaccaagttagccaatacctaaacattgtaaagggtttgaccaccaactaaaactaccaaacaaaaaagaaacttttctagctttcagc 36318966  T
Q  387 caacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    ||||||||||| |||||||||||||| |||| |||  |||| |||||||||| ||||| ||| |||||  ||||||||||||||    
T  36318965 caacctaaagataaatattttactttatcaagcaatttgggtaaaggagtaatagaatcattgaaacacatattgttacgttca 36318882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 288 - 470
Target Start/End: Original strand, 10475 - 10657
Alignment:
Q  288 acaacaacaaaaccaactcagccaatacccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaacc 387  Q
    |||||||||||||||| | |||||||||||||||||||||| ||| || |||||||||||  ||| ||||||| ||||||  | ||||||||||||||||    
T  10475 acaacaacaaaaccaagttagccaatacccaaacattgtaacgggtttaaccaccaactaaaagtgccaaacaaaaaagaagcgtttctagctttcaacc 10574  T
Q  388 aacctaaagacaaatattttactttgtcaaacaacctggggaaaggagtaacagaattattaaaacatctattgttacgttca 470  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| ||| |||||  ||||||||||||||    
T  10575 aacctaaagacaaatattttactttgtcaagcaacctgggtaaaggagtaatagaatcattgaaacacatattgttacgttca 10657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 10401 - 10449
Alignment:
Q  198 aaaaatggaattatattaacaacaagagcctcgttagcacaaggcgtgc 246  Q
    |||||||||||||||||||||||||||| ||| |||||||||| |||||    
T  10401 aaaaatggaattatattaacaacaagagtctcattagcacaagacgtgc 10449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 427
Target Start/End: Original strand, 181722 - 181834
Alignment:
Q  315 cccaaacattgtaaagggcttgaccaccaactattagtaccaaacataaaagagacttttctagctttcaaccaacctaaagacaaatattttactttgt 414  Q
    |||||||||||||| || ||||| ||||| ||||| | ||||||| ||||    || ||| | |||||||||||  ||||||||| |||||| ||||| |    
T  181722 cccaaacattgtaagggacttgaacaccacctatttgaaccaaacctaaagaccaccttttttgctttcaaccaggctaaagacatatatttaactttat 181821  T
Q  415 caaacaacctggg 427  Q
    | |||||||||||    
T  181822 ctaacaacctggg 181834  T

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