View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16974_low_15 (Length: 479)
Name: NF16974_low_15
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 16 - 462
Target Start/End: Original strand, 39851245 - 39851705
Alignment:
| Q |
16 |
tcacacaaacccctaaccatagtattataagtacaaacgtccggcaacatatcattcccagtcatcaattcagtaacctcaacaactttcttcaaccatt |
115 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
39851245 |
tcacacaaacccctaaccattgtattataagtccaaacgtccggcaacatatcattcccagtcatcaattcagtaacctcaacagcttccttcaaccatt |
39851344 |
T |
|
| Q |
116 |
tctacttacaatacccatgaaccaaaatattataagtattcctattaggaacaagaccattatttttcatttgatacaacaaatcccctaactttactca |
215 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
39851345 |
tcaacttacaatacccatgaaccaaaatattataagtattcctattaggaacaagaccattatttttcatttgatacaacaaatcccctaagtttactca |
39851444 |
T |
|
| Q |
216 |
actgacttctcttacacagagcagtcaaaacagtattgtaagtaacattatcaggacaacaaccaaattcacccttttgattaatcaaccgaaaagcttc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39851445 |
actgacttctcttacacagagcagtcaaaacagtattgtaagtaacattatcaggacaacaaccgaattcccccttttgattaatcaaccgaaaagcttc |
39851544 |
T |
|
| Q |
316 |
ttagaaattattatcagaacaataaccatgaatcaaaatattgaaagtatttggattaggttcaaa--------------atagtaccttgtgtggaatt |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
39851545 |
ttagaaattattatcagaacaataaccatgaatcaaaatattgaaagtatttggattaggttgaaaatgtaagatgcattatagtaccttgtgtggaatt |
39851644 |
T |
|
| Q |
402 |
gtagaatgttgtgtggagttatagtaccttgtgaaacaaatggaaacccgttgagctgaat |
462 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39851645 |
gtagaatgatgtctggagttatagtaccttgtgaaacaaatggaaacccgttgagctgaat |
39851705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 13 - 366
Target Start/End: Original strand, 43172002 - 43172354
Alignment:
| Q |
13 |
tcatcacacaaacccctaaccatagtattataagtacaaacgtccggcaacatatcattcccagtcatcaattcagtaacctcaacaactttcttcaacc |
112 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| | |||||||||||||| ||| |||||||| || ||| ||||||| |
|
|
| T |
43172002 |
tcatcacacaaacccctaaccattgtattataagtccaaacatccggcaacatacccttcccagtcatcaactcaataacctcagcagcttctttcaacc |
43172101 |
T |
|
| Q |
113 |
atttctacttacaatacccatgaaccaaaatattataagtattcctattaggaacaagaccattatttttcatttgatacaacaaatcccctaactttac |
212 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||| |||||||| ||||||||| | |
|
|
| T |
43172102 |
atttcagcttacaatacccatgaaccaaaatattataagtattcctattaggaaaaagaccactattcttcatttgaagcaacaaat-ccctaacttgag |
43172200 |
T |
|
| Q |
213 |
tcaactgacttctcttacacagagcagtcaaaacagtattgtaagtaacattatcaggacaacaaccaaattcacccttttgattaatcaaccgaaaagc |
312 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||| |||| ||| |||||||||||||||||| || |
|
|
| T |
43172201 |
tcaactgacttctcttacacaaagcagttaaaacagtattataagtaacattatcaggacaacaaccatattcccccatttgattaatcaaccgaagggc |
43172300 |
T |
|
| Q |
313 |
ttcttagaaattattatcagaacaataaccatgaatcaaaatattgaaagtatt |
366 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43172301 |
ttcttcggtattattatcagaacaataaccatgaatcaaaatattaaaagtatt |
43172354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University