View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16974_low_16 (Length: 476)
Name: NF16974_low_16
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 10 - 462
Target Start/End: Original strand, 37068350 - 37068802
Alignment:
| Q |
10 |
attatacttgttctgaaataggcatatctaggttcataaatcatagccctacttcaagagagatatcaagtgaagtttaagaaaataagagatattttta |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37068350 |
attatacttgttctgaaataggcatatctaggttcataaatcatagccctacttcaagagagatatcaagtgaagtttaagaaaataagagatattttta |
37068449 |
T |
|
| Q |
110 |
cacatgtttccactatgttaagtgtactagttttcacttttcccctgtcatattttcattctcacttttattttacttttgtgctagtaaaatatatatg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37068450 |
cacatgtttccactatgttaagtgtactagttttcacttttcccctgtcatattttcattctcacttttattttacttttatgctagtaaaatatatatg |
37068549 |
T |
|
| Q |
210 |
caaagaaaaaattgtggagtccggacttgcatgattaataaatacaaaagcaattctatatcactccaaaacagaatggaaagtttcatattaggtattg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37068550 |
caaagaaaaaattgtggagtccggacttgcatgattaataaatacaaaagcaattctatatcactccaaaacagaatggaaagtttcatattaggtattg |
37068649 |
T |
|
| Q |
310 |
gggttcttgtgttgctgtatattcttgtttgattaccttgaattcaattgtttttctctgtttactatccaattatgtttttctcattgattgnnnnnnn |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37068650 |
gggttcttgtgttgctgtatattcttgtttgattaccttgaattcaattgtttttctctgtttactatccaattatgtttttctcattgattgaaaaaaa |
37068749 |
T |
|
| Q |
410 |
nggctcagtccagtcttggttctttgcagaatgccttcaaatatgattttagt |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37068750 |
aggctcagtccagtcttggttctttgcagaatgccttcaaatatgattttagt |
37068802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 390
Target Start/End: Original strand, 37078600 - 37078676
Alignment:
| Q |
315 |
cttgtgttgctgtatattcttgtttgatta-ccttgaattcaattgtttttctctgtttactatccaattatgtttt |
390 |
Q |
| |
|
||||||||||||||||||| |||| ||||| || ||||||| ||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
37078600 |
cttgtgttgctgtatattcctgttcgattacccctgaattcgattatttttgcctgtttattatccaattatgtttt |
37078676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University