View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16974_low_20 (Length: 433)
Name: NF16974_low_20
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 18221117 - 18221531
Alignment:
| Q |
1 |
aaaggttcaaccttttgctcctcatgacggcccaagaaccgaacttgccggcgttggccccactgcatcataccagagaacttgatctcagacaaacatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18221117 |
aaaggttcaaccttttgctcctcatgacggcccaagaaccgaacttgccggcgttggccccactgcatcataccagagaacttgatctcagacaaacatg |
18221216 |
T |
|
| Q |
101 |
aaccctgcttgggaaccaaactagtagcggcatcattgataactgggctcttaggaggagaggcccagaagctccatgagtttcctttctctgcaaattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18221217 |
aaccctgcttgggaaccaaactagtagcagcatcattgataactgggctcttaggaggagaggcccagaagctccatgagtttcctttctctgcaaattc |
18221316 |
T |
|
| Q |
201 |
attagctgagatgcttctacaaagtgttttgattgcaaattcgattcccatcacgtatttctcgtcaagtgtagggattttcttcccctctggctttcca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18221317 |
attagctgagatgcttctacaaagtgttttgattgcaaattcgattcccatcacgtatttctcgtcaagtgtagggattttcttcccctctggctttcca |
18221416 |
T |
|
| Q |
301 |
aagctttgatcgttaaagtgagtgctaagagatttgaggcttggataccttagagatactttttgctcccctttgtcactgacctacaagatttcaacaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18221417 |
aagctttgatcgttaaagtgagtgctaagagatttgaggcttggataccttagagatactttttgctcccctttgtcactgacctacaagatttcaacaa |
18221516 |
T |
|
| Q |
401 |
ctagtatatgaaatg |
415 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
18221517 |
ctagtatatgaaatg |
18221531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 43012832 - 43013060
Alignment:
| Q |
1 |
aaaggttcaaccttttgctcctcatgacggcccaagaaccgaacttgccggcgttggccccactgcatcataccagagaacttgatctcagacaaacatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| ||| |||||||||||| |||||| |
|
|
| T |
43012832 |
aaaggttcaaccttttgctcctcatgacgccccaagaaccgaacttgttggcgttggccccactgcaccataccagtgaatttgatctcagaccaacatg |
43012931 |
T |
|
| Q |
101 |
aaccctgcttgggaaccaaactagtagcggcatcattgataactgggctcttaggaggagaggcccagaagctccatgagtttcctttctctgcaaattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||| || |||||||||||||||||||| |||||||| |
|
|
| T |
43012932 |
aaccctgcttgggaaccaaactagtagcagcatcattgataactgggctcataggaggagagacccaaaaactccatgagtttcctttctcagcaaattc |
43013031 |
T |
|
| Q |
201 |
attagctgagatgcttctacaaagtgttt |
229 |
Q |
| |
|
|||||||||||||||||||| ||||||| |
|
|
| T |
43013032 |
gttagctgagatgcttctacagagtgttt |
43013060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 289 - 413
Target Start/End: Original strand, 43013060 - 43013184
Alignment:
| Q |
289 |
tctggctttccaaagctttgatcgttaaagtgagtgctaagagatttgaggcttggataccttagagatactttttgctcccctttgtcactgacctaca |
388 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||| |
|
|
| T |
43013060 |
tctggctttccaaagcattgatctttaaagtgagtgctaagagatttgaggcttggataccttagagatacttcctgctcccatttgtcagtgacctaca |
43013159 |
T |
|
| Q |
389 |
agatttcaacaactagtatatgaaa |
413 |
Q |
| |
|
||||||||||| |||||| |||||| |
|
|
| T |
43013160 |
agatttcaacatctagtaaatgaaa |
43013184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University