View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16974_low_21 (Length: 431)
Name: NF16974_low_21
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 21 - 421
Target Start/End: Complemental strand, 1885376 - 1884976
Alignment:
| Q |
21 |
aataacctcagcttatggtctcgtgtttcaaatgaaataaatagtatattacaaggtgaaagaaatagatacgatagacatcatgttctgtccaattcta |
120 |
Q |
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| T |
1885376 |
aataacctcagcttatggtttcgtgtttcaaatgaaataaatagtatattacaaggtgaaagaaatagatacgatagacatcatgttctgtccaattcta |
1885277 |
T |
|
| Q |
121 |
cctacgaagacataccggactctacaacattgcaacaacgctttctattaaactggagttttcaagaatcaattttcacccttatcattcccaccacatt |
220 |
Q |
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| T |
1885276 |
cctacgaagacataccggactctacaacattgcaacaacgctttctattaaactggagttttcaagaatcaattttcacccttatcattcccaccacatt |
1885177 |
T |
|
| Q |
221 |
tcctaataaaaattgtatttgaatatgagttctttaatgatgtttctttcacaatccctcaagaactcgactccaccctcatatctctcacattggcatc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1885176 |
tcctaataaaaattgtatttgaatatgagttctttaatgatgtttctttcacaatccctcaagaactcgactccaccctcatatctctcacattggcatc |
1885077 |
T |
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| Q |
321 |
ttcaaatgagagaatacaatccttgaaaacttctttaagatgtaaattattcccttcaaagcactaatcaatctctcctccaccccatgatgctattttc |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1885076 |
ttcaaatgagagaatacaatccttgaaaacttctttaagatgtaaattattcccttcaaagcactaatcaatctctcctccaccccatgatgctattttc |
1884977 |
T |
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| Q |
421 |
t |
421 |
Q |
| |
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| T |
1884976 |
t |
1884976 |
T |
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