View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16974_low_25 (Length: 404)
Name: NF16974_low_25
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 6e-81; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 226 - 394
Target Start/End: Original strand, 32063144 - 32063312
Alignment:
| Q |
226 |
aaatcaaccatggtagagcgtttggtgaggacttggattgattttcatgattagggattgaaatgatattttttatgaatttgttccaaggaaatttctc |
325 |
Q |
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| T |
32063144 |
aaatcaaccatggtagagcgtttggtgagcacttggattgattttcatgattagggattgaaatgatattttttatgaatttgttccaaggaaatttctc |
32063243 |
T |
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| Q |
326 |
tcatgtttatgtcataaatttagtattggccgcaactatctacttgcagtcaaagtggaatgatgatgt |
394 |
Q |
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| T |
32063244 |
tcatgtttatgtcataaatgtagtattggccacaactatcttcttgcagtcaaagtggaatgatgatgt |
32063312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 32062949 - 32063081
Alignment:
| Q |
30 |
actgcatcatacttttgatgttgtgcattgtaggcttagtctataaacaacataaaccaattgcaagcaaagtaaacgatgctacagggatgagatttta |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
32062949 |
actgcatcatacttttgatgttgtgcattgtaggcttagtctataaacaacataaaccaattgcaagcaaagtaaatgttgctacagggatgagatttta |
32063048 |
T |
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| Q |
130 |
ttcaaaatctactgtcacggccttgatatatac |
162 |
Q |
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| T |
32063049 |
ttcaaaatctactgtcacggccttgatatatac |
32063081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 32 - 160
Target Start/End: Original strand, 51279345 - 51279473
Alignment:
| Q |
32 |
tgcatcatacttttgatgttgtgcattgtaggcttagtctataaacaacataaaccaattgcaagcaaagtaaacgatgctacagggatgagattttatt |
131 |
Q |
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| T |
51279345 |
tgcatcatacttttgaggttgtgcattgtagacttaggctataaacgacacaaaccaattgcaagccaagtaaatgctgctatagcgatgccattttatt |
51279444 |
T |
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| Q |
132 |
caaaatctactgtcacggccttgatatat |
160 |
Q |
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| T |
51279445 |
caaaatctattgcaacggccttgatatat |
51279473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 51279121 - 51279188
Alignment:
| Q |
30 |
actgcatcatacttttgatgttgtgcattgtaggcttagtctataaacaacataaaccaattgcaagc |
97 |
Q |
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|||||||||||||||||| ||||||||||||| |||||| |||||||||||| ||| ||||||||||| |
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| T |
51279121 |
actgcatcatacttttgaagttgtgcattgtaagcttaggctataaacaacacaaatcaattgcaagc |
51279188 |
T |
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