View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16974_low_27 (Length: 395)
Name: NF16974_low_27
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_low_27 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 11 - 395
Target Start/End: Original strand, 39556344 - 39556729
Alignment:
| Q |
11 |
taattctacatgtgagcaaacaaacatgtaaaaaataattctacaactctagaaccatatttgagtctttcaaaaattaaaccaaacatgggctaagttg |
110 |
Q |
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| T |
39556344 |
taattctacatgtgagcaaacaaacatgtaaaaaataattctacaactctagaatcatatttgagtctttcaaaaattaaaccaaacatgggctaagttg |
39556443 |
T |
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| Q |
111 |
tgagatggagaggcaagagtcactccttgactacccctttatccatgaatataggtgattgttttaatataggagcatatttctaatatttttcaaggtt |
210 |
Q |
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| T |
39556444 |
tgagatggagaggcaagagtcactccttgactacccctttatccatgaatataggtgattgttttaatataggagcatatttctaatatttttcaaggtt |
39556543 |
T |
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| Q |
211 |
gatacaacacatacgtagtgagaca-tttaaaataacttcaaaaataacacaagctttctgtttcggaccggcataaatcccattaagaacggcccaaca |
309 |
Q |
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| T |
39556544 |
gatacaacacatacgtagtgagacattttaaaataacttcaaaaataacacaagctttctgtttcggaccggcataaatcccattaagaacggcccaaca |
39556643 |
T |
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| Q |
310 |
agctaaggcttgcatcacttggagaaaatccttgtgaaggcgtatgtaaagccctgctcggattaccacacaggaacacacccata |
395 |
Q |
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||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39556644 |
agcaaaggcttgcatcacttggagaaaatcctcgtgaaggcgtatgtaaagccctgctcggattaccacacaggaacacacccata |
39556729 |
T |
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