View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16974_low_3 (Length: 726)
Name: NF16974_low_3
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 626; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 17 - 712
Target Start/End: Original strand, 34932684 - 34933382
Alignment:
| Q |
17 |
caatgtgtatggattctgcacaacggaagcacaagtgtgaattcctcgttttctagaatcaccattcatactaaagttcctatgggaaggcataatgaaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34932684 |
caatgtgtatggattctgcacaacggaagcacaagtgtgaattcctcattttctagaatcaccattcatactaaagttcctatgggaaggcataatgaaa |
34932783 |
T |
|
| Q |
117 |
ccattc-tttaggccttcaaaaatattttcttacnnnnnnn-ggttggaggccatgtaattaggacctttggcaccccaaaagctacacataatatgcac |
214 |
Q |
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|||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34932784 |
ccattcctttaggccttcaaaaatattttcttgcttttttttggttggaggccatgtaattaggacctttggcaccccaaaagctacacataatatgcac |
34932883 |
T |
|
| Q |
215 |
tgatagtgagactaatctctgcataggtgttttagatcttagcttaaaactcttcaccatggatgtgttttgtggggatcgaactgcggcctacccccac |
314 |
Q |
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| T |
34932884 |
tgataatgagactaatctctgcataggtgttttagatcttagcttaaaactcttcaccatggatgtgttttgtggggatcgaactgaggcctacccccac |
34932983 |
T |
|
| Q |
315 |
aagctcagctacagttaataaactgaaccacacccattaagcattactattagtgactatttt-tattttcagttttataaggcctcataaactatcaaa |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34932984 |
aagctcagctacagttaataaactgaaccacacccattaagtattactattagtgactattttttattttcagttttataaggcctcataaactatcaaa |
34933083 |
T |
|
| Q |
414 |
aatccaacctatactccatcacttaactaacataaaaagttttatttaaaagtttggccatatgacttcataagaatatcagattcttaacagataggca |
513 |
Q |
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| T |
34933084 |
aatccaacctatactccatcacttaactaacataaaaagttttatttaaaagtttggccatatgacttcataagaatatcagattcttaacagataggca |
34933183 |
T |
|
| Q |
514 |
aatacatgataagcaatgctacaaaacaaaatttaaagttataggtttggattgcaaagcaagaccatagtcaaattaagtaagaagaagtagtaagttt |
613 |
Q |
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| T |
34933184 |
aatacatgataagcaatgctacaaaacaaaatttaaagttataggtttggattgcaaagcaagaccatagtcaaataaagtaagaagaagtagtaagttt |
34933283 |
T |
|
| Q |
614 |
atatacctttccatgtccacctctggcactccaagcactaggagctccattagacctgtaatatgaccactcactcagggtggccttccccagtataat |
712 |
Q |
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| T |
34933284 |
atatacctttccatgtccacctctggcactccaagcactaggagctccattagacctgtaatatgaccactcactcagggtggccttccccaatataat |
34933382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 473 - 712
Target Start/End: Original strand, 34929051 - 34929291
Alignment:
| Q |
473 |
atatgacttcataagaatatcagattcttaacagataggcaaatacatgataagcaatgctacaaaacaaaatttaaagtt--ataggtttggattgcaa |
570 |
Q |
| |
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||||||||||||||| ||||||||||| |||| ||| ||||||||| ||||||||||||| ||||||||||| |||| |||| |||| |||| || |
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| T |
34929051 |
atatgacttcataagtatatcagattccgaacatctagacaaatacataataagcaatgctagaaaacaaaattaaaagagggatagatttgaattgaaa |
34929150 |
T |
|
| Q |
571 |
agcaagaccatagtcaaattaagtaagaagaagtagtaagtttatatacctttccatgtccacctctggcactccaagcactaggagctccattagacct |
670 |
Q |
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||| ||| ||| ||||||||||||||||| ||||||||| || |||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
34929151 |
agccagatcatggtcaaattaagtaagaaaaagtagtaaatt-atatacctttccttgtccacctctagcactccaaccactaggagctccattagacct |
34929249 |
T |
|
| Q |
671 |
gtaatatgaccactcactcagggtggccttccccagtataat |
712 |
Q |
| |
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||||| |||||||||||||| |||||||| |||| |||||| |
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| T |
34929250 |
gtaatgtgaccactcactcaaagtggccttgcccaatataat |
34929291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 617 - 705
Target Start/End: Original strand, 34922458 - 34922546
Alignment:
| Q |
617 |
tacctttccatgtccacctctggcactccaagcactaggagctccattagacctgtaatatgaccactcactcagggtggccttcccca |
705 |
Q |
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||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||| |
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| T |
34922458 |
tacctttccttgtccacctctggcactccaaccactaggagctccattagacctgtaatttgaccactcactcaaagtggctttcccca |
34922546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 213 - 301
Target Start/End: Original strand, 34928762 - 34928850
Alignment:
| Q |
213 |
actgatagtgagactaatctctgcataggtgttttagatcttagcttaaaactcttcaccatggatgtgttttgtggggatcgaactgc |
301 |
Q |
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| T |
34928762 |
actgataatgagactaatctctgcttaggtgttttcggtcttagcttaaaactcgtcaccatgaatgtgtttagtagagatcgaactgc |
34928850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 569 - 703
Target Start/End: Original strand, 34912829 - 34912958
Alignment:
| Q |
569 |
aaagcaagaccatagtcaaattaagtaagaagaagtagtaagtttatatacctttccatgtccacctctggcactccaagcactaggagctccattagac |
668 |
Q |
| |
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|||||| ||||| | ||||||||||||||||| |||||||| || |||||||| ||||||||||| ||| ||||| ||| |||| || | ||||| |
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| T |
34912829 |
aaagcacgaccaaactcaaattaagtaagaagtagtagtaaatt-----acctttccttgtccacctctagcattccaaccaccaggaactttactagac |
34912923 |
T |
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| Q |
669 |
ctgtaatatgaccactcactcagggtggccttccc |
703 |
Q |
| |
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||||||| |||||||||||||| ||||||||||| |
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| T |
34912924 |
ctgtaatgtgaccactcactcaaagtggccttccc |
34912958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 617 - 705
Target Start/End: Original strand, 34899033 - 34899121
Alignment:
| Q |
617 |
tacctttccatgtccacctctggcactccaagcactaggagctccattagacctgtaatatgaccactcactcagggtggccttcccca |
705 |
Q |
| |
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||||||||| |||||||||||||||||||| || ||||||||||| || |||| ||| |||||||||||||| ||||| ||||||| |
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| T |
34899033 |
tacctttcctagtccacctctggcactccaaccattaggagctccaaaagtcctgaaatgtgaccactcactcaaagtggctttcccca |
34899121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 34927761 - 34927878
Alignment:
| Q |
21 |
gtgtatggattctgcacaacggaa-gcacaagtgtgaattcctcgttttctagaatcaccattcatactaaagttcctatgggaaggcataatgaaacca |
119 |
Q |
| |
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||||||||||||||||||| || ||||||||||||| ||| ||||||||||||| |||||||| ||||||||||| |||||||||||||| | |
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| T |
34927761 |
gtgtatggattctgcacaaaacaatgcacaagtgtgaa---ctcattttctagaatca---ttcatacttaagttcctatgagaaggcataatgaagtta |
34927854 |
T |
|
| Q |
120 |
tt-ctttaggccttcaaaaatatt |
142 |
Q |
| |
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|| |||||||||| |||||||||| |
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| T |
34927855 |
ttactttaggcctccaaaaatatt |
34927878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 34912048 - 34912125
Alignment:
| Q |
17 |
caatgtgtatggattctgcacaac-ggaagcacaagtgtgaattcctcgttttctagaatcaccattcatactaaagttcc |
96 |
Q |
| |
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|||||||||||||||||||||||| ||||||| || |||| ||||| ||||| ||||| |||||||||||||||||| |
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| T |
34912048 |
caatgtgtatggattctgcacaacaaaaagcacatgtttgaactcctcattttcaagaat---cattcatactaaagttcc |
34912125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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