View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16974_low_38 (Length: 313)
Name: NF16974_low_38
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_low_38 |
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| [»] scaffold0370 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 68 - 297
Target Start/End: Complemental strand, 38633335 - 38633106
Alignment:
| Q |
68 |
gagtttcatcattataacatgctattaaatagaaaatacctgtatttttctaacatttttatcaggcttttccccaaaccgtcctccctttgatgctttg |
167 |
Q |
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| T |
38633335 |
gagtttcatcgttataacatgctattaaatagaaaatagctatatttttctaacatttttatcaggcttttccccaaaccgtcctccctttgatgctttg |
38633236 |
T |
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| Q |
168 |
ttcatgaaattcaattcatcaagagccatatataaatccataagtatcttctctttactcgccacgcggtttctccgatccttttgaagatagtataatc |
267 |
Q |
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| T |
38633235 |
ttcatgaaattcaactcatcaagagccatatataaatccctaagtatcttctccttactcgccacgcggtttctccgttccttttgtagatagtgtaatc |
38633136 |
T |
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| Q |
268 |
tattcaacacagaatctagatgctctcttt |
297 |
Q |
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| T |
38633135 |
tattcaacatagaatctagatactctcttt |
38633106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 38633420 - 38633357
Alignment:
| Q |
14 |
agaattcatagactgcacaaaaataatttgaaaaccagaacaaaataaatatacgagtttcatc |
77 |
Q |
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| T |
38633420 |
agaattcatagactacacaaaaataatttgaaaaccagaacaatataaatatatgagtttcatc |
38633357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 206
Target Start/End: Complemental strand, 38637287 - 38637182
Alignment:
| Q |
101 |
aaatacctgtatttttctaacatttttatcaggcttttccccaaaccgtcctccctttgatgctttgttcatgaaattcaattcatcaagagccatatat |
200 |
Q |
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| T |
38637287 |
aaatagctttatttttcttacatttttatcaagcttttccccgaaccattctccatttgctactttgtttatgaaattcaattgatcaagagtcatatac |
38637188 |
T |
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| Q |
201 |
aaatcc |
206 |
Q |
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| T |
38637187 |
aaatcc |
38637182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 12206 - 12138
Alignment:
| Q |
176 |
attcaattcatcaagagccatatataaatccataagtatcttctctttactcgccacgcggtttctccg |
244 |
Q |
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| T |
12206 |
attcaattcatcaagagccatattaaaatcccttagtattttccctttaatcgccacactgtttctccg |
12138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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