View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16974_low_39 (Length: 311)
Name: NF16974_low_39
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 264
Target Start/End: Complemental strand, 3338425 - 3338170
Alignment:
| Q |
12 |
atgaagaggaggaggg-ttgtgggatccaccatgagtgcattggatggagcatannnnnnnnnnnn--gccgacaaagggcatctttggatgcatgggtt |
108 |
Q |
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| T |
3338425 |
atgaagaggaggaggggttgtggggtccaccatgagtgcattggatggagcataagagagagagagaggccgacaaagggcatctttggatgcatgggtt |
3338326 |
T |
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| Q |
109 |
ttagtatttgcgcacgcacgggagttgttattctcaatatatatcaatgacttgtgattaatatcatattattatcactaattaattttaggtaggtttc |
208 |
Q |
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| T |
3338325 |
ttagtatttgcgcacgcacgggagttgttattctcaatatatatcaatgacttgtgattaatatcatattattatcactaattaattttaggtaggtttc |
3338226 |
T |
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| Q |
209 |
agagatttcagagtaattcagctaactcttcggtgctttccactgtctttttgtga |
264 |
Q |
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| T |
3338225 |
agagatttcagagtaattcagctaactcttcggtgctttccactgtctttttgtga |
3338170 |
T |
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