View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16974_low_41 (Length: 292)
Name: NF16974_low_41
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 1322038 - 1321773
Alignment:
| Q |
19 |
gtttgaatgttggagattaactacaagagaatgaccataaccttaaggtccctttggattgccttgttcttgtcatttaccttttgttctatgttttctc |
118 |
Q |
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| T |
1322038 |
gtttgaatgttggagattaactacaagagaatgaccataaccttaaggtccctttggattgccttcttcttgtcatttaccttttgttctatgttttctc |
1321939 |
T |
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| Q |
119 |
aatttaccttcacaaatctatcatcttatttacacacacaaaatgtaaattgttataaccccaaagtggttgaaatattaaagtacaattatgttatttg |
218 |
Q |
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| T |
1321938 |
aatttaccttcacaaatctatcatcttatttacacacacaaaatgtaaattgttataacccccaagtggttgaaatattaaagtacaattatgttatttg |
1321839 |
T |
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| Q |
219 |
aacattaaaatatagatattacatttgacatcgtatgttttatttgtatttctcctagtttcatct |
284 |
Q |
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| T |
1321838 |
aacattaaaatatagatattacatctgacatcgtatgttttatctgtatttctcctagttttatct |
1321773 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 47464489 - 47464521
Alignment:
| Q |
207 |
ttatgttatttgaacattaaaatatagatatta |
239 |
Q |
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| T |
47464489 |
ttatgttatttgaacattaaaatatagacatta |
47464521 |
T |
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