View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16974_low_42 (Length: 287)
Name: NF16974_low_42
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_low_42 |
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| [»] scaffold0491 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 2335863 - 2336095
Alignment:
| Q |
9 |
tgaatattggtctgtgagaatgacaccattataaatgttctatatacatattagaacaatgtatgcaattcattagatctcaaaaaatgaacttgacaaa |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
2335863 |
tgaatattggtctgtgagaatgacaccattataaatgttctatatacatattagaacaatgtatgaaattcattagatctcaaaaaatgaacttaacaaa |
2335962 |
T |
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| Q |
109 |
atatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttatctggattttcattgtaggtacttaatctgccacaatgaaatctcaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2335963 |
atatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttatctggattttcattgtaggtactcaatctgccacaatgaaatctcaa |
2336062 |
T |
|
| Q |
209 |
cttcaaatgaacgcaaatgctataatgaatagt |
241 |
Q |
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||||||||| | ||||||||||||||||||||| |
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| T |
2336063 |
cttcaaatggaagcaaatgctataatgaatagt |
2336095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 60 - 241
Target Start/End: Original strand, 2319550 - 2319732
Alignment:
| Q |
60 |
tagaacaatgtatgcaattcattagatctcaaaa-aatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttc |
158 |
Q |
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||||| |||||| |||||||||||||||| |||| ||||||||||| |||||| ||||||||||||| |||||||| |||||| ||||||||||||||| |
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| T |
2319550 |
tagaataatgtaagcaattcattagatctaaaaaaaatgaacttgataaaatacttagtttccaatttctatggtcagaaaatgtggatggtctttcttc |
2319649 |
T |
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| Q |
159 |
ttatctggattttcattgtaggtacttaatctgccacaatgaaatctcaacttcaaatgaacgcaaatgctataatgaatagt |
241 |
Q |
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| T |
2319650 |
ttatttggcctttcattgtgggtactcaatctgcctcagtgacatctcaacctcatatggaagcaaatgcgatattaaatagt |
2319732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 234
Target Start/End: Original strand, 1087053 - 1087195
Alignment:
| Q |
95 |
atgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttatctggattttcattgtaggtacttaat---ctg |
191 |
Q |
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||||||| ||||||||||||||||| |||| || || |||||||||| |||| | ||||||| |||| || | ||| ||||| || ||| ||| ||| |
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| T |
1087053 |
atgaactacacaaaatatttagtttcaaatttctttgatccaaaaatgtggattgcctttcttattatttgcagtttgattgtgggaactcaatctgctg |
1087152 |
T |
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| Q |
192 |
ccacaatgaaatctcaacttcaaatgaacgcaaatgctataat |
234 |
Q |
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| T |
1087153 |
ccactatgacatctcaacttcaaatggaagcaaatgctataat |
1087195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 234
Target Start/End: Original strand, 1594547 - 1594694
Alignment:
| Q |
90 |
aaaaaatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttatctggattttcattgtaggtacttaatc |
189 |
Q |
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|||| |||||||||| |||||||||| |||| ||||||| |||||||||||||| ||| | |||||||||||| || | | | | ||| || ||| |||| |
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| T |
1594547 |
aaaatatgaacttgagaaaatatttaatttcaaattcctttggtccaaaaatgatgattgcctttcttcttatttgcagtctgactgtgggaactcaatc |
1594646 |
T |
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| Q |
190 |
tgccacaatgaaatctc---aacttcaaatgaacgcaaatgctataat |
234 |
Q |
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||||| || || ||||| ||||||||||| | |||||||| ||||| |
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| T |
1594647 |
tgccaaaacgacatctcataaacttcaaatggaagcaaatgcaataat |
1594694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 161
Target Start/End: Complemental strand, 3957147 - 3957057
Alignment:
| Q |
71 |
atgcaattcattagatctcaaaaaatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttctta |
161 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| ||| ||| |||| ||||||||||| ||| | | |||||||||| |
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| T |
3957147 |
atgcaattcattcaatctcaaaaaatgaacttgacaaaatatttttgttctaatatctatagtccaaaaatgtggaagatttttcttctta |
3957057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 2327802 - 2327874
Alignment:
| Q |
89 |
caaaaaatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttctta |
161 |
Q |
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| T |
2327802 |
caaaaaatgaacttgacaaaatatttatttcctaatttcaatattccaaaaatgtgggtggtctttcttctta |
2327874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 95 - 241
Target Start/End: Complemental strand, 7923 - 7777
Alignment:
| Q |
95 |
atgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttatctggattttcattgtaggtacttaatctgcca |
194 |
Q |
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| T |
7923 |
atgagcttgaaaaaatatttaatttcaaatttctttggtccaaaaatgtggatggtctttcttcttatttgcggtttggttgagggaactcaatctgcca |
7824 |
T |
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| Q |
195 |
caatgaaatctcaacttcaaatgaacgcaaatgctataatgaatagt |
241 |
Q |
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|||||| |||||||||||||||| | |||||||||||| | |||||| |
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| T |
7823 |
caatgacatctcaacttcaaatggaagcaaatgctatattaaatagt |
7777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 3304 - 3232
Alignment:
| Q |
90 |
aaaaaatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttat |
162 |
Q |
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|||| |||||||||| ||||||||||||||| |||| || ||||||||||||| ||||||||||||||||||| |
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| T |
3304 |
aaaatatgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggatggtctttcttcttat |
3232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 90 - 241
Target Start/End: Complemental strand, 18751555 - 18751401
Alignment:
| Q |
90 |
aaaaaatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttatctggattttcattgtaggtacttaatc |
189 |
Q |
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|||| |||||||||| ||||||||||||||| |||| || ||||||||||||| ||||||||||||||||||| || ||| ||| || ||| |||| |
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| T |
18751555 |
aaaatatgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggatggtctttcttcttatttgcggtttggttgagggaactcaatc |
18751456 |
T |
|
| Q |
190 |
tgccacaatgaaatc---tcaacttcaaatgaacgcaaatgctataatgaatagt |
241 |
Q |
| |
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||||||||||| ||| ||||||||||||| | |||||||||||| | |||||| |
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|
| T |
18751455 |
tgccacaatgacatctcatcaacttcaaatggaagcaaatgctatattaaatagt |
18751401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 18741498 - 18741426
Alignment:
| Q |
90 |
aaaaaatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttat |
162 |
Q |
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|||| |||||||||| ||||||||||||||| |||| || ||||||||||||| ||||||||||||||||||| |
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| T |
18741498 |
aaaatatgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggatggtctttcttcttat |
18741426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 18746462 - 18746390
Alignment:
| Q |
90 |
aaaaaatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttat |
162 |
Q |
| |
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|||| |||||||||| ||||||||||||||| |||| || ||||||||||||| ||||||||||||||||||| |
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| T |
18746462 |
aaaatatgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggatggtctttcttcttat |
18746390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 18755669 - 18755597
Alignment:
| Q |
90 |
aaaaaatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttat |
162 |
Q |
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|||||| |||||||||||||||||||||||| |||| | ||||||||| ||| ||| | |||||||||||| |
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| T |
18755669 |
aaaaaaagaacttgacaaaatatttagtttcaaatttcattggtccaaatatgtggaatgcctttcttcttat |
18755597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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