View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16974_low_43 (Length: 283)
Name: NF16974_low_43
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 42 - 267
Target Start/End: Original strand, 31384508 - 31384733
Alignment:
| Q |
42 |
tcatgttgtttttatttaataattatactttctagttctgcatatattaagtgattagttattggtctgttccttgcattaagtgttcagttattggtct |
141 |
Q |
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| T |
31384508 |
tcatgttgtttttatttaataattatactttctagttctgcatatattaagtgattagttattggtctgttccttgcattaagtgttcagttattggtct |
31384607 |
T |
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| Q |
142 |
gttccttgcatgatgatgatattgtggtaagctaacttggaagcttagaaatgtgtattgtggattttctcttcccttccctggttttgcaaacctctgt |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31384608 |
gttccttgcatgatgatgatattgtggtaagctaacttggaagcttagaaatgtgtattgtggattttctcttcccttccctggttttgcaaacctctgt |
31384707 |
T |
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| Q |
242 |
aatcttgtactgtttaatgttatttt |
267 |
Q |
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|||||||||||||||||||||||||| |
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| T |
31384708 |
aatcttgtactgtttaatgttatttt |
31384733 |
T |
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