View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16974_low_44 (Length: 281)

Name: NF16974_low_44
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16974_low_44
NF16974_low_44
[»] chr5 (5 HSPs)
chr5 (154-266)||(33577295-33577407)
chr5 (154-266)||(33577845-33577957)
chr5 (35-152)||(33577615-33577732)
chr5 (77-152)||(33577112-33577187)
chr5 (11-68)||(33576991-33577048)
[»] chr2 (7 HSPs)
chr2 (154-252)||(10447964-10448061)
chr2 (87-152)||(10448164-10448229)
chr2 (182-265)||(10864222-10864304)
chr2 (216-244)||(27969168-27969196)
chr2 (216-244)||(28091391-28091419)
chr2 (216-244)||(28097726-28097754)
chr2 (216-244)||(28101623-28101651)


Alignment Details
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 154 - 266
Target Start/End: Original strand, 33577295 - 33577407
Alignment:
Q  154 ttgataatttcactgctggggtgaagtgtgctttgcgtgcctttgacagtggttgccattaatgttctttgtagtgttggtggggtgcaaagccactccc 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33577295 ttgataatttcactgctggggtgaagtgtgctttgcgtgcctttgacagtggttgccattaatgttctttgtagtgttggtggggtgcaaagccactccc 33577394  T
Q  254 tagttgttgatat 266  Q
    |||||||||||||    
T  33577395 tagttgttgatat 33577407  T

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Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 154 - 266
Target Start/End: Original strand, 33577845 - 33577957
Alignment:
Q  154 ttgataatttcactgctggggtgaagtgtgctttgcgtgcctttgacagtggttgccattaatgttctttgtagtgttggtggggtgcaaagccactccc 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33577845 ttgataatttcactgctggggtgaagtgtgctttgcgtgcctttgacagtggttgccattaatgttctttgtagtgttggtggggtgcaaagccactccc 33577944  T
Q  254 tagttgttgatat 266  Q
    |||||||||||||    
T  33577945 tagttgttgatat 33577957  T

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Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 33577615 - 33577732
Alignment:
Q  35 agagaaaatgctcaagatcaagaatgtgcagtggcttgttttgatcgcagctgatatcactttcttcaactggaaacactacaaggtaataatattattc 134  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33577615 agagaaaatgctcaagatcaagaatgtgcagtggcttgtcttgatcgcggctgatatcactttcttcaactggaaacactacaaggtaataatattattc 33577714  T
Q  135 ttttcttgcctgcattat 152  Q
    ||||||| ||||||||||    
T  33577715 ttttcttacctgcattat 33577732  T

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Target: chr5; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 33577112 - 33577187
Alignment:
Q  77 gatcgcagctgatatcactttcttcaactggaaacactacaaggtaataatattattcttttcttgcctgcattat 152  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33577112 gatcgcggctgatatcactttcttcaactggaaacactacaaggtaataatattattcttttcttgcctgcattat 33577187  T

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Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 33576991 - 33577048
Alignment:
Q  11 ttatacttagagaaaagttcttacagagaaaatgctcaagatcaagaatgtgcagtgg 68  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  33576991 ttatacttagagaaaagttcttacagagaaaatgctcgagatcaagaatgtgtagtgg 33577048  T

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Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 154 - 252
Target Start/End: Complemental strand, 10448061 - 10447964
Alignment:
Q  154 ttgataatttcactgctggggtgaagtgtgctttgcgtgcctttgacagtggttgccattaatgttctttgtagtgttggtggggtgcaaagccactcc 252  Q
    ||||| |||||||| ||| ||||||| ||||||||| |||||||||||| ||| |||||| |||||||||||| |||||||||||||||||||||||||    
T  10448061 ttgatgatttcactactgaggtgaagcgtgctttgcatgcctttgacagcggt-gccattcatgttctttgtattgttggtggggtgcaaagccactcc 10447964  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 10448229 - 10448164
Alignment:
Q  87 gatatcactttcttcaactggaaacactacaaggtaataatattattcttttcttgcctgcattat 152  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  10448229 gatatcactttcttcagctggaaacactacaaggtaataatattattcctttcttgcttgcattat 10448164  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 10864304 - 10864222
Alignment:
Q  182 tgctttgcgtgcctttgacagtggttgccattaatgttctttgtagtgttggtggggtgcaaagccactccctagttgttgata 265  Q
    |||||||||||| |||||| | ||| |||||| ||||||||||| ||||   ||||||||||||||||||| | | ||||||||    
T  10864304 tgctttgcgtgcatttgacggcggt-gccattgatgttctttgtggtgtcaatggggtgcaaagccactccattgctgttgata 10864222  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 244
Target Start/End: Complemental strand, 27969196 - 27969168
Alignment:
Q  216 tgttctttgtagtgttggtggggtgcaaa 244  Q
    |||||||||||||||||||||||||||||    
T  27969196 tgttctttgtagtgttggtggggtgcaaa 27969168  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 244
Target Start/End: Original strand, 28091391 - 28091419
Alignment:
Q  216 tgttctttgtagtgttggtggggtgcaaa 244  Q
    |||||||||||||||||||||||||||||    
T  28091391 tgttctttgtagtgttggtggggtgcaaa 28091419  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 244
Target Start/End: Original strand, 28097726 - 28097754
Alignment:
Q  216 tgttctttgtagtgttggtggggtgcaaa 244  Q
    |||||||||||||||||||||||||||||    
T  28097726 tgttctttgtagtgttggtggggtgcaaa 28097754  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 244
Target Start/End: Original strand, 28101623 - 28101651
Alignment:
Q  216 tgttctttgtagtgttggtggggtgcaaa 244  Q
    |||||||||||||||||||||||||||||    
T  28101623 tgttctttgtagtgttggtggggtgcaaa 28101651  T

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