View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16974_low_45 (Length: 278)
Name: NF16974_low_45
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_low_45 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 7 - 278
Target Start/End: Complemental strand, 4994967 - 4994705
Alignment:
| Q |
7 |
tcgaagaaaatcgaaactcaaatccagccaatttgaattttccc-gtcaaagttgctaattcgggcagataccagttctatctatttttatatgcctaat |
105 |
Q |
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| T |
4994967 |
tcgaagaaaatccaaactcaaatccagccaatttgaattttccccgtcaaagttgctaattcgggcagataccagttctat----ttttatatgcctaat |
4994872 |
T |
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| Q |
106 |
tgctggtctggatttatgaaattattattataatgatacagtacaagatttaaagcatcaactgagtgatttttaatttttaaacgtgacatgattctgt |
205 |
Q |
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| T |
4994871 |
tgctggtctggatttatgaaatgattgttataatgatgtagtacaagatttaaagcatcaactgagtgatttttaatttttaaacgtgacatgattctgt |
4994772 |
T |
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| Q |
206 |
aatttttaatggaaatatttgtgttggtgatgatgcaaatgcaatgaagtcctatcgagagataaatttaaag |
278 |
Q |
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||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4994771 |
aatttttaatggaaatagttgtgttggtgatgat------gcaatgaagtcctatcgagagataaatttaaag |
4994705 |
T |
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