View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16974_low_48 (Length: 248)
Name: NF16974_low_48
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_low_48 |
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| [»] scaffold1719 (2 HSPs) |
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| [»] scaffold1248 (1 HSPs) |
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| [»] scaffold0952 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 230
Target Start/End: Complemental strand, 54406367 - 54406157
Alignment:
| Q |
20 |
attaaagttgaacattgaaggttgctcatatttcaaactttctgacatattggtatgttgtgttgcatagatatgctggacacttcttcagtctgccact |
119 |
Q |
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| T |
54406367 |
attaaagttgaacattgaaggttgctcatatttcaaactttctgacatattggtatgttgtgttgcatagatatgctggacacttcttctgtctgccact |
54406268 |
T |
|
| Q |
120 |
ctctccattaaaacagtagtctttgcgtgttgtaatttactttaacttaatgtaacaaccgttgcttttcagataactacaacaaaattatccaaatata |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
54406267 |
ctctccattaaaacagtagtctttgcgtgttgtaatttactttaacttaatgtaacaaccgttgcttttcagataactacaacaaaattatccacatata |
54406168 |
T |
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| Q |
220 |
tatgatgtgtc |
230 |
Q |
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||||||||||| |
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| T |
54406167 |
tatgatgtgtc |
54406157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 20600602 - 20600493
Alignment:
| Q |
22 |
taaagttgaacattgaaggttgctcatatttcaaactttctgacatattggtatgttgtgttgcatagatatgctggacacttcttcagtctgccactct |
121 |
Q |
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|||| ||||||||| |||||| |||||||||||||||| ||||||||||| ||||||| |||||||||||||||| |||| ||||||||||||||||| |
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| T |
20600602 |
taaatttgaacattcaaggttactcatatttcaaactt-ctgacatattgctatgttgagttgcatagatatgctagaca---cttcagtctgccactct |
20600507 |
T |
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| Q |
122 |
ctccattaaaacag |
135 |
Q |
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||| |||||||||| |
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| T |
20600506 |
ctctattaaaacag |
20600493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1719 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold1719
Description:
Target: scaffold1719; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 345 - 290
Alignment:
| Q |
22 |
taaagttgaacattgaaggttgctcatatttcaaactttctgacatattggtatgtt |
78 |
Q |
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|||| |||||||||||||||| |||||||||||||| ||||||||||||| |||||| |
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| T |
345 |
taaatttgaacattgaaggttactcatatttcaaac-ttctgacatattgctatgtt |
290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1719; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 285 - 248
Alignment:
| Q |
142 |
ttgcgtgttgtaatttactttaacttaatgtaacaacc |
179 |
Q |
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| T |
285 |
ttgcgtgttctaatttacttttacttaatgtaacaacc |
248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1248 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1248
Description:
Target: scaffold1248; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 2272 - 2169
Alignment:
| Q |
27 |
ttgaacattgaaggttgctcatatttcaaactttctgacata-ttggtatg-ttgtgttgcatagatatgctggacacttcttcagtctgccactctctc |
124 |
Q |
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|||||||||||||||| ||||||| |||||| |||||||| | ||| |||| ||| |||||||||||||||| |||| |||||||||||||||| || |
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| T |
2272 |
ttgaacattgaaggttactcatatatcaaac-ttctgacagatttgctatgtttgagttgcatagatatgctagaca---tttcagtctgccactctttc |
2177 |
T |
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| Q |
125 |
cattaaaa |
132 |
Q |
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||||||| |
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| T |
2176 |
tattaaaa |
2169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0952 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0952
Description:
Target: scaffold0952; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 41 - 144
Alignment:
| Q |
27 |
ttgaacattgaaggttgctcatatttcaaactttctgacata-ttggtatg-ttgtgttgcatagatatgctggacacttcttcagtctgccactctctc |
124 |
Q |
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|||||||||||||||| ||||||| |||||| |||||||| | ||| |||| ||| |||||||||||||||| |||| |||||||||||||||| || |
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| T |
41 |
ttgaacattgaaggttactcatatatcaaac-ttctgacagatttgctatgtttgagttgcatagatatgctagaca---tttcagtctgccactctttc |
136 |
T |
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| Q |
125 |
cattaaaa |
132 |
Q |
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||||||| |
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|
| T |
137 |
tattaaaa |
144 |
T |
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