View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16974_low_5 (Length: 668)
Name: NF16974_low_5
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 348 - 650
Target Start/End: Original strand, 27429096 - 27429406
Alignment:
| Q |
348 |
acatttatgctgaaaagatgatacctcatttcaatgtatcgactcaaataacactttcaaacatttacaacccaaaaag--------agatgctttattt |
439 |
Q |
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| T |
27429096 |
acatttatgctgaaaagatgatacctcatttcaatgtatcgactcaaataacactttcaaacattgacaacccaaaaagttaaatagagatgctttattt |
27429195 |
T |
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| Q |
440 |
tctctctttatatataaaggtaagtaatcattattcatgaggatcaggagtgtgtggccattgtattttgaatgctgtaaataggatatatctcacaaca |
539 |
Q |
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| T |
27429196 |
tctctctttatatataaaggtaagtaatcattattcatgaggatcaggagtgtgtggccattgtattttgaatgctgtaaataggatatatctcacaaca |
27429295 |
T |
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| Q |
540 |
ttcacaaattaactatctccatcaactttttgcttattgcactaaaccccacattcccactcaccccaaaacaacaaaacctgaaaacctcaccacatta |
639 |
Q |
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| T |
27429296 |
ttcacaaattaactatctccatcaactttttgcttattggactaaaccccacattcccactcaccccaaaacaacaaaacctgaaaacctcaccacatta |
27429395 |
T |
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| Q |
640 |
atacagacacc |
650 |
Q |
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| T |
27429396 |
atacagacacc |
27429406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 27427862 - 27428202
Alignment:
| Q |
17 |
aatataaagtaagttgatatccataataaatcatcaaattgcattatcttctaattaaattgat----tatcaatgtatactaacataacaatctattta |
112 |
Q |
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| T |
27427862 |
aatataaagtaagttgatatccataaaaaatcatcaaattgcattatcttctaattaaattgatatattatcaatgtatactaacataacattctattta |
27427961 |
T |
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| Q |
113 |
atattgatataacgtaaggtttacttgaaaaatatattaaaaaagtccaaattcctctcttggagctaaatgttagagatgacaaatttgatggtaaaat |
212 |
Q |
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| T |
27427962 |
atattgatataacgtaaggtttacttgaaaaatatattaaaaaagtccaaattcctctcttggagctaaatgttagagatcacaaatttgatggtaaaat |
27428061 |
T |
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| Q |
213 |
ctctaatttttataactatctaaagatttttt-----agtagtaaaaaccgaggttgaaa----------ag----atgctattatgctagtgtctggtt |
293 |
Q |
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| T |
27428062 |
ctctaatttttataactatctaaagatttttttagttagtagtaaaatccgaggttgacacaaacacaatagcacaatgctattatgctagtgtctggtt |
27428161 |
T |
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| Q |
294 |
atagaacac--cta-ttttttatacaaaattcagcgtatca |
331 |
Q |
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| T |
27428162 |
atagaacacaactatttttttataaaaaattcagagtatca |
27428202 |
T |
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