View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16974_low_50 (Length: 245)

Name: NF16974_low_50
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16974_low_50
NF16974_low_50
[»] chr2 (9 HSPs)
chr2 (1-228)||(44493362-44493589)
chr2 (1-228)||(43932350-43932577)
chr2 (1-228)||(18672673-18672899)
chr2 (4-225)||(42487262-42487482)
chr2 (21-229)||(20720430-20720638)
chr2 (108-229)||(23787632-23787753)
chr2 (1-89)||(3105579-3105667)
chr2 (5-85)||(21439560-21439640)
chr2 (5-85)||(20719135-20719214)
[»] chr4 (11 HSPs)
chr4 (1-229)||(33688881-33689109)
chr4 (1-229)||(510602-510830)
chr4 (1-229)||(18087107-18087335)
chr4 (1-229)||(31317023-31317251)
chr4 (1-229)||(10322178-10322406)
chr4 (1-229)||(25422545-25422773)
chr4 (1-229)||(44209083-44209312)
chr4 (1-229)||(35060518-35060747)
chr4 (4-85)||(53571273-53571354)
chr4 (1-85)||(11670582-11670665)
chr4 (189-229)||(25243650-25243690)
[»] chr5 (6 HSPs)
chr5 (1-229)||(41139508-41139736)
chr5 (1-228)||(13920512-13920739)
chr5 (1-229)||(8217595-8217823)
chr5 (1-190)||(38693093-38693282)
chr5 (1-229)||(43440463-43440689)
chr5 (1-85)||(26865435-26865519)
[»] chr1 (11 HSPs)
chr1 (1-229)||(46596359-46596587)
chr1 (1-229)||(33708525-33708753)
chr1 (5-229)||(36362684-36362911)
chr1 (1-225)||(30981970-30982194)
chr1 (1-148)||(12000201-12000348)
chr1 (1-85)||(15054139-15054223)
chr1 (1-85)||(37986473-37986557)
chr1 (1-85)||(36248810-36248894)
chr1 (1-69)||(40182125-40182193)
chr1 (1-69)||(12367983-12368051)
chr1 (1-85)||(29231589-29231673)
[»] scaffold0651 (1 HSPs)
scaffold0651 (1-229)||(6447-6675)
[»] chr7 (11 HSPs)
chr7 (1-229)||(46043876-46044104)
chr7 (1-228)||(46331229-46331456)
chr7 (1-229)||(6934540-6934768)
chr7 (5-225)||(44167348-44167567)
chr7 (1-228)||(15131184-15131410)
chr7 (1-228)||(33625266-33625493)
chr7 (1-229)||(45958314-45958539)
chr7 (45-229)||(28094939-28095123)
chr7 (1-85)||(3496130-3496214)
chr7 (1-83)||(43083580-43083662)
chr7 (1-85)||(38199529-38199613)
[»] chr8 (11 HSPs)
chr8 (1-228)||(37706342-37706568)
chr8 (1-229)||(24451964-24452191)
chr8 (1-229)||(21135800-21136028)
chr8 (1-229)||(35369667-35369896)
chr8 (1-229)||(16478034-16478261)
chr8 (1-229)||(35863521-35863749)
chr8 (1-205)||(16473463-16473666)
chr8 (114-229)||(13323393-13323508)
chr8 (4-95)||(36063149-36063241)
chr8 (1-85)||(39337465-39337549)
chr8 (1-90)||(41280545-41280633)
[»] chr3 (11 HSPs)
chr3 (1-229)||(45234927-45235155)
chr3 (1-229)||(32943472-32943700)
chr3 (1-225)||(37179425-37179648)
chr3 (5-229)||(53439779-53440005)
chr3 (1-229)||(32147462-32147688)
chr3 (47-229)||(1429809-1429991)
chr3 (5-229)||(53397567-53397784)
chr3 (136-229)||(27868275-27868368)
chr3 (1-70)||(50614824-50614893)
chr3 (1-85)||(117174-117258)
chr3 (1-45)||(44557346-44557390)
[»] scaffold0097 (2 HSPs)
scaffold0097 (21-229)||(24268-24476)
scaffold0097 (5-85)||(22972-23052)
[»] chr6 (3 HSPs)
chr6 (1-229)||(5079088-5079316)
chr6 (1-85)||(17246063-17246147)
chr6 (166-229)||(25839459-25839522)
[»] scaffold0148 (2 HSPs)
scaffold0148 (113-228)||(38472-38587)
scaffold0148 (1-91)||(35722-35812)
[»] scaffold0002 (1 HSPs)
scaffold0002 (115-229)||(172279-172393)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-85)||(239741-239825)
[»] scaffold0385 (1 HSPs)
scaffold0385 (1-70)||(9703-9772)


Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 44493362 - 44493589
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  44493362 atagtgaaaatcgtgaatatttttggcattgggattgtcattccgcccatttcatcaagataaagaagacgtagtttatcataactagttcctgccaaga 44493461  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          ||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| |||| |||| |||||||||||||||    
T  44493462 aaaaaagggtagtgccaataaatccatgagatattatttgtaaaacggctccgttgaggccaatatcacttatagaaccgattcctagaattatgaaacc 44493561  T
Q  201 catatgagataccgaagaataagctatt 228  Q
    ||||||||||||||||||||||||||||    
T  44493562 catatgagataccgaagaataagctatt 44493589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 43932577 - 43932350
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    |||||||||||| ||||||||||| |||||||||| | ||||||||||||||| | |||||||||||||| ||||||||||||||||| || |||||||     
T  43932577 atagtgaaaatcatgaatattttttacattgggatagccattccgcccatttcgttaagataaagaagacgtagtttatcataactaggtcttgccaaga 43932478  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          |||||   ||||||||| ||||| |||||||||||||||||||||||||||| ||||| ||||||||| ||||||||| |||||||||||||||    
T  43932477 aaaaaagggtagcaccaataaattcatgagatattatttgtaaaacggccccgttgagcccaatatcacttatagaaccaattcctagaattatgaaacc 43932378  T
Q  201 catatgagataccgaagaataagctatt 228  Q
    ||||||||||||||||||||||||||||    
T  43932377 catatgagataccgaagaataagctatt 43932350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 18672673 - 18672899
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||||||||||||||||| ||||||||| | |||| |||||||||| |||||||||| ||||| |||||||||||||||||||| |||||||     
T  18672673 atagtgaaaatcgtgaatatttttggcattgggatagccatttcgcccatttcgtcaagataaataagacgtagtttatcataactagttcttgccaaga 18672772  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          |||||  | |||||||||||||| || ||||||||||||||||||||||||| ||||| ||||||||| ||||||||| |||||||||||||||    
T  18672773 aaaaa-gggtagcgtcaataaatccatgagatgttatttgtaaaacggccccgttgagcccaatatcacttatagaaccaattcctagaattatgaaacc 18672871  T
Q  201 catatgagataccgaagaataagctatt 228  Q
    |||||||||| |||||||||||||||||    
T  18672872 catatgagattccgaagaataagctatt 18672899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 4 - 225
Target Start/End: Complemental strand, 42487482 - 42487262
Alignment:
Q  4 gtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagnnnn 103  Q
    |||||||||||||||||||||| |||||||||   ||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||        
T  42487482 gtgaaaatcgtgaatatttttg-cattgggatgtccattccgtccatttcgtcaagataaagaagacgtagtttatcataactagttcctgccaagaaaa 42487384  T
Q  104 nnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacccat 203  Q
       |||||  |||||||||||||||| ||||||||||||||||||||||||||||  |||| ||||||||| ||||||||| || |||||||||||||||    
T  42487383 aaagggtagcgccaataaatccatgagatattatttgtaaaacggccccgttgagctcaatatcacttatagaaccaattcctacaattatgaaacccat 42487284  T
Q  204 atgagataccgaagaataagct 225  Q
    |||||||| |||||||||||||    
T  42487283 atgagatatcgaagaataagct 42487262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 20720430 - 20720638
Alignment:
Q  21 ttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagnnnnnnngggtaatgccaata 120  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||||||||  ||||||||||||| |||||||| |||||       |||||   ||||||    
T  20720430 ttttggcattgggatagtcattccgcccatttcgtcaagataaagaagatgtagtttatcataattagttcctcccaagaaaaaaagggtagcaccaata 20720529  T
Q  121 aatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacccatatgagataccgaagaat 220  Q
    |||| |||| |||||||||||||||||||| ||||||| ||| | ||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||    
T  20720530 aatctatgagatattatttgtaaaacggcctcgttgagcccattatcacttatagaaccaattcctagaattatgaaacccatataagataccgaagaat 20720629  T
Q  221 aagctattc 229  Q
    |||||||||    
T  20720630 aagctattc 20720638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 108 - 229
Target Start/End: Original strand, 23787632 - 23787753
Alignment:
Q  108 ggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacccatatga 207  Q
    |||| ||||||||||||||||||||||||||||||||||||| | |||||| ||||| |||||  || ||||||||| ||||||||||||| ||||||||    
T  23787632 ggtagtgccaataaatccatgaaatattatttgtaaaacggctctgttgagcccaatatcactactagaaccaattcctagaattatgaaatccatatga 23787731  T
Q  208 gataccgaagaataagctattc 229  Q
    ||||| ||||||||| ||||||    
T  23787732 gatacagaagaataaactattc 23787753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 3105579 - 3105667
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagt 89  Q
    |||||||||||| |||||||||||| ||||||||| ||||||||||||||||| |||| ||||||||| | ||||||||||||||||||    
T  3105579 atagtgaaaatcttgaatatttttggcattgggatagtcattccgcccatttcttcaaaataaagaaggcgtagtttatcataactagt 3105667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 21439640 - 21439560
Alignment:
Q  5 tgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataac 85  Q
    ||||||||||||||||| ||| ||||| ||| ||||||||||| ||||| |||||||||||||||| |||| |||||||||    
T  21439640 tgaaaatcgtgaatattattggcattgagatagtcattccgcctatttcgtcaagataaagaagacgtagtctatcataac 21439560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 20719214 - 20719135
Alignment:
Q  5 tgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataac 85  Q
    |||||||||||| |||||||| ||||||||| | ||||||||||||||| |||||||||| ||||| |||| |||||||||    
T  20719214 tgaaaatcgtgattatttttggcattgggatagccattccgcccatttcgtcaagataaa-aagacgtagtctatcataac 20719135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 33689109 - 33688881
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||| |||||||||||||||||||| |||||||     
T  33689109 atagtgaaaatcgtgaatatttttgacattgggatagtcattccgtccatttcgtcaagataaagaagacgtagtttatcataactagttcttgccaaga 33689010  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          |||||  |||||||||||||||| |||||||||||||||| || |||||||| ||||| ||||||||||||||||||| |||||||||||||||    
T  33689009 aaaaaagggtagcgccaataaatccatgagatattatttgtaaaacagctccgttgagcccaatatcacttataaaaccaattcctagaattatgaaacc 33688910  T
Q  201 catatgagataccgaagaataagctattc 229  Q
    ||||||||||||| |||||||||||||||    
T  33688909 catatgagataccaaagaataagctattc 33688881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 510830 - 510602
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||     
T  510830 atagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactagttcctgccaaga 510731  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          ||| |   ||||||||||||||| ||||||||||||||| |||||||||||| ||| | ||||||||| ||||||||| |||||||||||||||    
T  510730 aaaaaagggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctagaattatgaaacc 510631  T
Q  201 catatgagataccgaagaataagctattc 229  Q
    |||||||||||||||||||||||||||||    
T  510630 catatgagataccgaagaataagctattc 510602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 18087107 - 18087335
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||     
T  18087107 atagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactagttcctgccaaga 18087206  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          ||| |   ||||||||||||||| ||||||||||||||| |||||||||||| ||| | ||||||||| ||||||||| |||||||||||||||    
T  18087207 aaaaaagggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctagaattatgaaacc 18087306  T
Q  201 catatgagataccgaagaataagctattc 229  Q
    |||||||||||||||||||||||||||||    
T  18087307 catatgagataccgaagaataagctattc 18087335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 31317023 - 31317251
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    |||||||||||||||||||||||||  |||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  31317023 atagtgaaaatcgtgaatatttttggtattgggatagccattccgcccatttcgtcaagataaagaagacatagtttatcataactagttcctgccaaga 31317122  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          ||| |  |||||||||||||||| ||||||||| |||||||||||||||||| ||||| ||||||||| ||| ||||| || |||||||||||     
T  31317123 caaaaagggcagcgccaataaatccatgagatattatttctaaaacggccccgttgagcccaatatcacttatagaactaattcctaaaattatgaaact 31317222  T
Q  201 catatgagataccgaagaataagctattc 229  Q
    |||||||||||||||||||||||||||||    
T  31317223 catatgagataccgaagaataagctattc 31317251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 10322178 - 10322406
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||||||||| || ||||||||||||||||| |||||||     
T  10322178 atagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtaatttatcataactagttcttgccaaga 10322277  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          |||||  ||||||||||| |||| |||||||||||||||||||||||||||| ||||| ||||||||| ||||||||  | |||||||||||||    
T  10322278 aaaaaagggtagcgccaataaatctatgagatattatttgtaaaacggccccgttgagcccaatatcacttatagaaccaatttctggaattatgaaacc 10322377  T
Q  201 catatgagataccgaagaataagctattc 229  Q
    | |||||||||||||||||||||||||||    
T  10322378 cgtatgagataccgaagaataagctattc 10322406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 25422545 - 25422773
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    |||||||||||||||||||||||||| |||||||| | ||||||||||||||| ||| |||||||||||| || |||||||||||||||||||||||||     
T  25422545 atagtgaaaatcgtgaatatttttgatattgggatagccattccgcccatttcgtcaggataaagaagacgtaatttatcataactagttcctgccaaga 25422644  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          ||| |   ||||||||||||||| ||||||||||||||| |||||||||||| ||| | ||||||||| |||||||||  | |||||||||||     
T  25422645 aaaaaagggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcaaataattatgaaact 25422744  T
Q  201 catatgagataccgaagaataagctattc 229  Q
    |||||||||||||||||||||||||||||    
T  25422745 catatgagataccgaagaataagctattc 25422773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 44209312 - 44209083
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||| ||||||||||||||||||| |||| | || | ||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||| |||     
T  44209312 atagtaaaaatcgtgaatatttttggcattagaatagccattccgtccatttcgtcaagataaagaagacgtagtttatcataactagttcctgcaaaga 44209213  T
Q  101 nnnnnng-ggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaac 199  Q
            ||||  |||||||||||||||| ||||||||||||||||| | |||||||| ||||| ||| ||||| ||||||||| ||||||||||||||    
T  44209212 aaaaaaatggtagcgccaataaatccatgagatattatttgtaaaacgtctccgttgagcccaatatcatttatagaaccaattcctagaattatgaaac 44209113  T
Q  200 ccatatgagataccgaagaataagctattc 229  Q
     |||||||||||||||| ||||||||||||    
T  44209112 tcatatgagataccgaaaaataagctattc 44209083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 35060747 - 35060518
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    |||| ||||||||| ||| |||||| |||||||||   ||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||     
T  35060747 atagcgaaaatcgtaaatgtttttggcattgggatatccattccgcccatttcgtcaagataaagaagacgtagtttatcatatctagttcctgccaaga 35060648  T
Q  101 nnnnnngggtaatgccaataaatccatga-aatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaac 199  Q
          |||||  | |||||||||||||| | ||||||||||||||||| || |||||| ||||| | ||||||| ||||||||| ||||||||| |||     
T  35060647 aaaaaagggtagcgtcaataaatccatgagattattatttgtaaaacggaccagttgagcccaatattacttatagaaccaattcctagaattataaaat 35060548  T
Q  200 ccatatgagataccgaagaataagctattc 229  Q
     ||||||| ||| ||||||||||| |||||    
T  35060547 tcatatgatataacgaagaataagttattc 35060518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 53571354 - 53571273
Alignment:
Q  4 gtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataac 85  Q
    |||||||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||||||||| |||| |||||||||    
T  53571354 gtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataac 53571273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 11670582 - 11670665
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataac 85  Q
    |||||||||||||||| |||||||| ||||||||| | |||||||| |||||| |||||||||||||||| |||| |||||||||    
T  11670582 atagtgaaaatcgtga-tatttttggcattgggatagccattccgctcatttcgtcaagataaagaagacgtagtctatcataac 11670665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 25243650 - 25243690
Alignment:
Q  189 aattatgaaacccatatgagataccgaagaataagctattc 229  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  25243650 aattatgaaacccatatgagataccgaagaataaactattc 25243690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 41139508 - 41139736
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  41139508 atagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacatagtttatcataactagttcctgccaaga 41139607  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
           ||||  |||||||||||||||| ||||||||||||||||||||| |||||| ||||| ||||||||| ||||||||  |  ||||||||||||    
T  41139608 aaaaaatggtagcgccaataaatccatgagatattatttgtaaaacggccctgttgagcccaatatcacttatagaaccaatttctgaaattatgaaacc 41139707  T
Q  201 catatgagataccgaagaataagctattc 229  Q
    |||||||||||||||||||||||||||||    
T  41139708 catatgagataccgaagaataagctattc 41139736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 13920512 - 13920739
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||| || |||||||||||||||||||||| |||||     
T  13920512 atagtgaaaatcgtgaatatttttgacattgggatagccattccgcccatttcgtcaagataaagaaaacgtagtttatcataactagttcctcccaaga 13920611  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          ||| |   ||||||||||||| | |||||||||||||||||||||||||||| ||||| | ||||||| ||| ||||| ||||||||||||| |    
T  13920612 aaaaaagggcagcaccaataaatccataagatattatttgtaaaacggccccgttgagcccaatattacttatagaacaaattcctagaattatgaaagc 13920711  T
Q  201 catatgagataccgaagaataagctatt 228  Q
    ||||||||||||||||||||||||||||    
T  13920712 catatgagataccgaagaataagctatt 13920739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 8217823 - 8217595
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||||||||||||||||| ||||||||| | |||||| |||||||| ||||||||||||| || |||| |||||||||||||||||||||||     
T  8217823 atagtgaaaatcgtgaatatttttggcattgggatagccattccacccatttcgtcaagataaagaaaacgtagtctatcataactagttcctgccaaga 8217724  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          |||   ||||||||||||||||| ||||||||||||||||||||| |||||| | ||| ||| ||||| ||||||||| |||||||||||||||    
T  8217723 aaaaaagggcggtgccaataaatccatgagatattatttgtaaaacggccctgttgagccgaatatcatttatagaaccaattcctagaattatgaaacc 8217624  T
Q  201 catatgagataccgaagaataagctattc 229  Q
    |||||| ||||||||||||||||||||||    
T  8217623 catatgggataccgaagaataagctattc 8217595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 38693282 - 38693093
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||||||||||||||||| |||| |||| | ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||     
T  38693282 atagtgaaaatcgtgaatatttttggcattaggatagccattccgcccatttcgtcaagataaaaaagacatagtttatcataactagttcctgccaaga 38693183  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaa 190  Q
          |||||  |||||||||||||||| |||||||||||||||| ||||||||||| ||||| ||||||||| ||||||||| |||||    
T  38693182 aaaaaagggtagcgccaataaatccatgagatattatttgtaaaacagccccgttgagcccaatatcacttatagaaccaattcttagaa 38693093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 43440689 - 43440463
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||| ||||||||||||||||||  ||||||||| | ||||||| ||||||| |||||||||||||||| |||||||||||||||||||  |||||||     
T  43440689 atagtaaaaatcgtgaatatttttagcattgggatagccattccgtccatttcgtcaagataaagaagacgtagtttatcataactagtttttgccaaga 43440590  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          ||| |  |||||||||||||||| |||||||||||||||||| |||||||||  |||| ||||||||| ||| ||||| ||||||||||  ||     
T  43440589 aaaaa-gggcagcgccaataaatccatgagatattatttgtaaaacggtcccgttgagctcaatatcacttatagaacaaattcctagaattatg-caca 43440492  T
Q  201 catatgagataccgaagaataagctattc 229  Q
    |||||||||||||||||||||||||||||    
T  43440491 catatgagataccgaagaataagctattc 43440463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 26865519 - 26865435
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataac 85  Q
    ||||||||||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||||||| | |||| |||||||||    
T  26865519 atagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcctcaagataaagaaggcgtagtctatcataac 26865435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 46596587 - 46596359
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||||||||||||||||| ||||||||| | |||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||     
T  46596587 atagtgaaaatcgtgaatatttttggcattgggatagccattccgctcatttcgtcaagataaagaagacgtagtttatcataactagttcctgccaaga 46596488  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          ||| |   ||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||| || |||||||||||     
T  46596487 aaaaaagggcagcaccaataaatccatgatatattatttgtaaaacggcctcgttgagcccaatttcacttataaaaccaattcctataattatgaaact 46596388  T
Q  201 catatgagataccgaagaataagctattc 229  Q
    |||||||||||||||||||||||||||||    
T  46596387 catatgagataccgaagaataagctattc 46596359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 33708753 - 33708525
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||||||||||||||||  |||| |||| ||||||||| ||||||| |||||||||||||||| |||||||||||||||| ||| |||||||     
T  33708753 atagtgaaaatcgtgaatatttttagcattaggatagtcattccgtccatttcgtcaagataaagaagacgtagtttatcataactaattcatgccaaga 33708654  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          ||||| || |||||||||||||| ||||||||| ||||| |||||||||||| ||||| ||||||||| ||||||||| |||||||||||||||    
T  33708653 aaaaaagggtagtgtcaataaatccatgagatattatttataaaatggccccgttgagcccaatatcacttatagaaccaattcctagaattatgaaacc 33708554  T
Q  201 catatgagataccgaagaataagctattc 229  Q
    |||||||||||||||||||||||||||||    
T  33708553 catatgagataccgaagaataagctattc 33708525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 36362911 - 36362684
Alignment:
Q  5 tgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagnnnnn 104  Q
    ||||||| ||||||||||||| ||||||||| | || | |||||||||| |||||||||||||||| |||||||||||||||||||||| |||||         
T  36362911 tgaaaattgtgaatatttttggcattgggatagccaatgcgcccatttcgtcaagataaagaagacgtagtttatcataactagttcctaccaagaaaaa 36362812  T
Q  105 nn---gggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaaccc 201  Q
         || || ||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||| ||||||||| || |||||||||||||    
T  36362811 aaaaaggatagtgccaataaatccatgagatattatttgtaaaacggccccgttgagcccaatatcacttatagaaccaattcataaaattatgaaaccc 36362712  T
Q  202 atatgagataccgaagaataagctattc 229  Q
    |||||||||| |||||||||| ||||||    
T  36362711 atatgagatatcgaagaataaactattc 36362684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 30982194 - 30981970
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||| |||||| |||||| |||||||||   || |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||     
T  30982194 atagtgaaaattgtgaatttttttggcattgggataaccactccgcccatttcgtcaagataaagaagacgtagtttatcataactagttcctgccaaga 30982095  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          |||||   ||||||||||||||| |||||||||||||||||| | ||||||| ||||| |||||| || || |||||| || ||||||||||||    
T  30982094 aaaaaagggtagcaccaataaatccatgagatattatttgtaaaacggtctcgttgagcccaatatcacttttagaatcaattcctaaaattatgaaacc 30981995  T
Q  201 catatgagataccgaagaataagct 225  Q
    |||||||||||| ||||||||||||    
T  30981994 catatgagatactgaagaataagct 30981970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 12000201 - 12000348
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||||| ||||||||||  ||||||||| | ||||||||||||||| ||||||||||||||||||||| ||||||||||||||  |||||||     
T  12000201 atagtgaaaatcgagaatattttttgcattgggatagccattccgcccatttcgtcaagataaagaagacatagtctatcataactagtttttgccaaga 12000300  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacgg 148  Q
          | | | ||||||||||||||||| ||||||||||||||||||    
T  12000301 aagaaagagcagtgccaataaatccatgagatattatttgtaaaacgg 12000348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 15054139 - 15054223
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataac 85  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| |||| |||||||||    
T  15054139 atagtgaaaatcgtgaatatttttggcattgggatagtcattccgcccatttcgtcaagataaagaagacgtagtctatcataac 15054223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 37986557 - 37986473
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataac 85  Q
    ||||||||||||||||||||||||| ||||||||| | |||||| |||||||| |||||||||||||||| |||| |||||||||    
T  37986557 atagtgaaaatcgtgaatatttttggcattgggatagccattccacccatttcgtcaagataaagaagacgtagtctatcataac 37986473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 36248810 - 36248894
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataac 85  Q
    ||||||||||||||||||||||||| ||||||||| |  |||||| ||||||| |||||||||||||||| |||| |||||||||    
T  36248810 atagtgaaaatcgtgaatatttttggcattgggatagctattccgtccatttcgtcaagataaagaagacgtagtctatcataac 36248894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 40182125 - 40182193
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaaga 69  Q
    ||||||||||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||||||||    
T  40182125 atagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaaga 40182193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 12368051 - 12367983
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaaga 69  Q
    ||||||||||||||||||||||||| ||||||||| | ||||||||||||||| |||| ||||||||||    
T  12368051 atagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaaaataaagaaga 12367983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 29231589 - 29231673
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataac 85  Q
    ||||||||||| ||||||||||||  ||||||||| |||||||| || ||||| ||||||||||||| || |||| |||||||||    
T  29231589 atagtgaaaatagtgaatattttttgcattgggatagtcattccacctatttcgtcaagataaagaaaacgtagtctatcataac 29231673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0651 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 6675 - 6447
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    |||||||||||||||||||||||||  |||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  6675 atagtgaaaatcgtgaatatttttggtattgggatagccattccgcccatttcgtcaagataaagaagacatagtttatcataactagttcctgccaaga 6576  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          ||| |  |||||||||||||||| ||||||||| |||||||||||||||||| ||||| ||||||||| ||| ||||| || |||||||||||     
T  6575 caaaaagggcagcgccaataaatccatgagatattatttctaaaacggccccgttgagcccaatatcacttatagaactaattcctaaaattatgaaact 6476  T
Q  201 catatgagataccgaagaataagctattc 229  Q
    |||||||||||||||||||||||||||||    
T  6475 catatgagataccgaagaataagctattc 6447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 46044104 - 46043876
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||     
T  46044104 atagtgaaaatcgtgaatatttttggcattgggatagtcattccgcccctttcgtcaagataaagaagacgtagtttatcataactagttcctgccaaga 46044005  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          |||||  |||||||||| ||||| |||||||||||||||||||||||||||| ||||| ||||||||| ||| ||||| || |||||||||||     
T  46044004 aaaaaagggtagcgccaataaattcatgagatattatttgtaaaacggccccgttgagcccaatatcacttatagaactaattcctaaaattatgaaaca 46043905  T
Q  201 catatgagataccgaagaataagctattc 229  Q
    |||||||||||||||| ||||||||||||    
T  46043904 catatgagataccgaaaaataagctattc 46043876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 46331229 - 46331456
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||| ||     
T  46331229 atagtgaaaatcatgaatatttttgacattgggatagtcattccgcccatttcgtcaagataaagaagacttattttatcataactagttcctgccgaga 46331328  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          |||||  |||||||||||||||| |||||||||||||||||||| ||||||| ||||| ||||||||| ||||||||| || |||||||||||     
T  46331329 aaaaaagggtagcgccaataaatccatgagatattatttgtaaaacggcctcgttgagcccaatatcacttatagaaccaattcctataattatgaaact 46331428  T
Q  201 catatgagataccgaagaataagctatt 228  Q
    ||||||||||||| ||||||||||||||    
T  46331429 catatgagataccaaagaataagctatt 46331456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 6934768 - 6934540
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||||||||||||||||  ||||||||| | ||||||||||||||| |||||||||||||||  |||| |||||||||||||||||||||||     
T  6934768 atagtgaaaatcgtgaatatttttagcattgggatagccattccgcccatttcgtcaagataaagaagatgtagtctatcataactagttcctgccaaga 6934669  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          ||| |   ||||||||||||||| ||||||||||||||| |||||||||||| ||| | ||||||||| ||||||||| |||||||||||||||    
T  6934668 aaaaaagggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctagaattatgaaacc 6934569  T
Q  201 catatgagataccgaagaataagctattc 229  Q
    |||||||||||||||||||||||||||||    
T  6934568 catatgagataccgaagaataagctattc 6934540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 44167567 - 44167348
Alignment:
Q  5 tgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagnnnnn 104  Q
    ||||||||||||||||||||| ||||||||| | |||||| |||||||| | |||||||||||||| ||||||||||||||||||||||||||||         
T  44167567 tgaaaatcgtgaatatttttggcattgggatagccattccacccatttcgttaagataaagaagacgtagtttatcataactagttcctgccaagaaaaa 44167468  T
Q  105 nngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacccata 204  Q
      || ||  ||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||| ||||||||||||||| |||    
T  44167467 a-ggctagcgccaataaatccacgaaatattatttgtaaaacggccccgttgagtccaatatcacttatagaaccaattcctagaattatgaaacctata 44167369  T
Q  205 tgagataccgaagaataagct 225  Q
    |||||||||||||||||||||    
T  44167368 tgagataccgaagaataagct 44167348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 15131184 - 15131410
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||||||||||| ||||| ||||||||| | ||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||     
T  15131184 atagtgaaaatcgtgaataattttggcattgggatagccattccgcccattttgtcaagataaagaagacgtagtttatcataactagttcctgccaaga 15131283  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          |||||   ||||||||||||||| |||||||||||||||||| | |||||||  |||| ||||||||| ||||||||| | |||||||||||||    
T  15131284 aaaaa-gggtagcaccaataaatccatgagatattatttgtaaaacggtctcgttgagctcaatatcacttatagaaccaattcctggaattatgaaacc 15131382  T
Q  201 catatgagataccgaagaataagctatt 228  Q
    ||||||||||||||||||||||||||||    
T  15131383 catatgagataccgaagaataagctatt 15131410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 33625266 - 33625493
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||||||||||||||||  ||||| ||| | ||||||||||||||| |||||||||||||||| || |||||||||||| ||| ||||||||     
T  33625266 atagtgaaaatcgtgaatattttttgcattgagatagccattccgcccatttcgtcaagataaagaagacgtaatttatcataactggtttctgccaaga 33625365  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          |||||  | |||||||||||||| |||||||||||||||||||| ||||||| ||||| ||||||||| ||||||||| ||||||||||||||     
T  33625366 aaaaaagggtagcgtcaataaatccatgagatattatttgtaaaacggccgcgttgagcccaatatcacttatagaaccaattcctagaattatgaaact 33625465  T
Q  201 catatgagataccgaagaataagctatt 228  Q
    ||| |||||||| |||||||||||||||    
T  33625466 catgtgagatactgaagaataagctatt 33625493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 45958539 - 45958314
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||| || ||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||  |||||||||||||||| ||||||||     
T  45958539 atagtgaaaattgttaatatttttgacattaggatagtcattccgcccatttcgtcaagataaagaagacat--tttatcataactagtttctgccaaga 45958442  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          |||||   | ||||||||| ||| |||||||||||||||||||| ||||||| ||||| ||||||||| ||||||||| |||||||||||||||    
T  45958441 aaaaa-gggtagcactaataaatccgtgagatattatttgtaaaacggcctcgttgagcccaatatcacttatagaaccaattcctagaattatgaaacc 45958343  T
Q  201 catatgagataccgaagaataagctattc 229  Q
    ||||||||||| |||||||||||| ||||    
T  45958342 catatgagataacgaagaataagcaattc 45958314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 45 - 229
Target Start/End: Original strand, 28094939 - 28095123
Alignment:
Q  45 gcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagnnnnnnngggtaatgccaataaatccatgaaatattatttgtaaa 144  Q
    ||||||||| |||||||||||||||| |||| |||||||||||||||||||||||       | | |   ||||||||||||||| ||||||||||||||    
T  28094939 gcccatttcgtcaagataaagaagacgtagtctatcataactagttcctgccaagaaaaaaagtgcagccccaataaatccatgagatattatttgtaaa 28095038  T
Q  145 acggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacccatatgagataccgaagaataagctattc 229  Q
    | |||| ||||||| ||| | ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28095039 atggcctcgttgagcccagtatcacttatagaaccaattcctagaattatgaaacccatatgagataccgaagaataagctattc 28095123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 3496130 - 3496214
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataac 85  Q
    |||||||||||| |||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| |||| |||||||||    
T  3496130 atagtgaaaatcatgaatatttttggcattgggatagtcattccgcccatttcgtcaagataaagaagacgtagtctatcataac 3496214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 43083662 - 43083580
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcata 83  Q
    ||||||||||||||||||||||||||||||||||| | ||||||  ||||||| ||||||||||||||||||||| |||||||    
T  43083662 atagtgaaaatcgtgaatatttttgacattgggatagccattccatccatttcgtcaagataaagaagacatagtctatcata 43083580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 38199529 - 38199613
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataac 85  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||  |||||| |||||||||||||||| |||| |||||||||    
T  38199529 atagtgaaaatcgtgaatatttttggcattgggatagtcattccgttcatttcgtcaagataaagaagacgtagtctatcataac 38199613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 37706568 - 37706342
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||| || |||||||||||||||| ||||||||| ||||||||||||||||||     
T  37706568 atagtgaaaatcgtgaatatttttgacattgggatagccattccgcccatgtcgtcaagataaagaagacgtagtttatcgtaactagttcctgccaaga 37706469  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          |||||  |||||||||||||||| |||||||||||||||||||| ||||||| ||||| ||||||| | ||||||||| |||||||||||||||    
T  37706468 aaaaa-gggtagcgccaataaatccatgatatattatttgtaaaacggcctcgttgagcccaatatcacttacagaaccaattcctagaattatgaaacc 37706370  T
Q  201 catatgagataccgaagaataagctatt 228  Q
    |||||||||||||||||||||| |||||    
T  37706369 catatgagataccgaagaataaactatt 37706342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 24451964 - 24452191
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||||||||||||||||| ||||||||| | |||||| |||||||| |||||||||||||||| |||||||||||||||||||||| | |||     
T  24451964 atagtgaaaatcgtgaatatttttggcattgggatagccattccacccatttcgtcaagataaagaagacgtagtttatcataactagttcctactaaga 24452063  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          |||||  |||||||||||||||| |||||||||||||||||| ||||||||| ||||| ||||||| | ||||||||| |||||||||||||||    
T  24452064 aaaaa-gggtagcgccaataaatccatgagatattatttgtaaaacggtcccgttgagcccaatatcacttacagaaccaattcctagaattatgaaacc 24452162  T
Q  201 catatgagataccgaagaataagctattc 229  Q
    |||||||||||||||||||||||||||||    
T  24452163 catatgagataccgaagaataagctattc 24452191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 21135800 - 21136028
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||||||||||||||||| ||||||||| | |||| |||||||||| |||||||||||||||| |||||||||||||||| ||| ||| |||     
T  21135800 atagtgaaaatcgtgaatatttttggcattgggatagccatttcgcccatttcgtcaagataaagaagacgtagtttatcataactaattcttgcaaaga 21135899  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          |||||  ||||||||||| ||||||| ||||||||||||||||||||||||| ||||| ||||||||| ||||||||| || ||||||||||||    
T  21135900 aaaaaagggtagagccaataaatctatgaaatgttatttgtaaaacggccccgttgagcccaatatcacttatagaaccaattcctataattatgaaacc 21135999  T
Q  201 catatgagataccgaagaataagctattc 229  Q
    |||||||||||||||| ||||| ||||||    
T  21136000 catatgagataccgaaaaataaactattc 21136028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 35369667 - 35369896
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataact--agttcctgccaa 98  Q
    ||||||||||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||||||||  |||| ||||||||||  ||||||||||||    
T  35369667 atagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagaagtagtctatcataactctagttcctgccaa 35369766  T
Q  99 gnnnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaa 198  Q
    |       ||| | |||||||||||| |||| |||||||||||||||||||| ||||||| ||||| ||||||||| ||||||||| || ||||||||||    
T  35369767 gaaaaaa-gggcagtgccaataaatctatgatatattatttgtaaaacggcctcgttgagcccaatatcacttatataaccaattcctataattatgaaa 35369865  T
Q  199 cccatatgagataccgaagaataagctattc 229  Q
    |||||||||||||||||||||||||||||||    
T  35369866 cccatatgagataccgaagaataagctattc 35369896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 16478034 - 16478261
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||||||||||||||||  |||||||||    |||| ||||||||  | |||||||||||||| |||||||| ||||||||||||||| |||     
T  16478034 atagtgaaaatcgtgaatatttttagcattgggatgacaattctgcccattttgttaagataaagaagacgtagtttattataactagttcctgctaaga 16478133  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          || ||   ||||||| ||||||| |||||||||||||||||||||||||||| ||||| ||||||||| ||||||||| |||||||||||||||    
T  16478134 aaaaaaggatagcaccaataa-tccatgagatattatttgtaaaacggccccgttgagtccaatatcacttatagaaccaattcctagaattatgaaacc 16478232  T
Q  201 catatgagataccgaagaataagctattc 229  Q
    ||||| |||||||||||||||||||||||    
T  16478233 catataagataccgaagaataagctattc 16478261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 35863521 - 35863749
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||| ||||||||||||| ||| ||||| | ||||||||| ||||| |||||||||||||  | ||||||||||||||||||||||||||||     
T  35863521 atagtgaaaattgtgaatatttttggcatcgggatagccattccgcctatttcgtcaagataaagaatgcgtagtttatcataactagttcctgccaaga 35863620  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          |||||  |||||||||||||||| |||||||||||||||||| ||||||||| | ||| | || || | || ||| || |||||||||||||||    
T  35863621 aaaaaagggtagcgccaataaatccatgagatattatttgtaaaacggtcccgttgagccaaatataacatacataatcaactcctagaattatgaaacc 35863720  T
Q  201 catatgagataccgaagaataagctattc 229  Q
    ||||||||||||| |||||||||||||||    
T  35863721 catatgagataccaaagaataagctattc 35863749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 16473463 - 16473666
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||||||||||||||||  |||||||||    |||| ||||||||  | |||||||||||||| |||||||| ||||||||||||||| |||     
T  16473463 atagtgaaaatcgtgaatatttttagcattgggatgacaattctgcccattttgttaagataaagaagacgtagtttattataactagttcctgctaaga 16473562  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          || ||   ||||||| ||||||| |||||||||||||||||||||||||||| ||||| ||||||||| ||||||||| |||||||||||||||    
T  16473563 aaaaaaggatagcaccaataa-tccatgagatattatttgtaaaacggccccgttgagtccaatatcacttatagaaccaattcctagaattatgaaacc 16473661  T
Q  201 catat 205  Q
    |||||    
T  16473662 catat 16473666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 114 - 229
Target Start/End: Complemental strand, 13323508 - 13323393
Alignment:
Q  114 gccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacccatatgagatacc 213  Q
    |||||| ||||||||| |||||||||||| ||||||||||||||| ||||| ||||||||| ||||||||  ||||||||||||||||||||||||||||    
T  13323508 gccaatcaatccatgagatattatttgtacaacggccccgttgagcccaatatcacttatagaaccaatttctagaattatgaaacccatatgagatacc 13323409  T
Q  214 gaagaataagctattc 229  Q
    ||||||||||||||||    
T  13323408 gaagaataagctattc 13323393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 36063241 - 36063149
Alignment:
Q  4 gtgaaaatcgtgaatattttt-gacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgc 95  Q
    |||||||||||||| |||||| | ||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  36063241 gtgaaaatcgtgaacattttttggcattgggatagtcattccgcccatttcgtcaagataaagaagacgtagtttatcataactagttcctgc 36063149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 39337465 - 39337549
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataac 85  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| || |||| |||||||||    
T  39337465 atagtgaaaatcgtgaatatttttggcattgggatagtcattccgcccatttcgtcaagataaagaaaacgtagtctatcataac 39337549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 41280633 - 41280545
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagtt 90  Q
    |||||||||||| ||||||||||||  || |  ||  |||||||||||||||| |||||||||||||||| || ||||||||||||||||    
T  41280633 atagtgaaaatcttgaatatttttggtat-gtaataatcattccgcccatttcgtcaagataaagaagacgtaatttatcataactagtt 41280545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 45235155 - 45234927
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||||||||||||||||| ||||||||| | ||||||  ||||||| |||||||||||||||| |||||||||||||||||||| |||||||     
T  45235155 atagtgaaaatcgtgaatatttttggcattgggatagccattccctccatttcgtcaagataaagaagacgtagtttatcataactagttcatgccaaga 45235056  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          |||||  |||||||| ||||||| |||||||||||||||||||| ||||||| ||||| ||||||||| ||||||||| |||||||||||||||    
T  45235055 aaaaaagggtagcgccaataagtccatgagatattatttgtaaaacggcctcgttgagcccaatatcacttatagaaccaattcctagaattatgaaacc 45234956  T
Q  201 catatgagataccgaagaataagctattc 229  Q
    |||||||||||| ||||||||||||||||    
T  45234955 catatgagatacagaagaataagctattc 45234927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 32943472 - 32943700
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||||||||||||||||| |||| ||||   ||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||| |||     
T  32943472 atagtgaaaatcgtgaatatttttggcattaggataaccattccgcctatttcttcaagataaagaagacgtagtttatcataactagttcctgcgaaga 32943571  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          ||||| ||| ||||||||||||| ||||||||||||||| ||| |||||||| ||||| ||||||||| ||||||||| ||||||||||||| |    
T  32943572 aaaaaagggtagtgcaaataaatccatgagatattatttgtaaaatggcaccgttgagcccaatatcacttatagaaccaattcctagaattatgaaatc 32943671  T
Q  201 catatgagataccgaagaataagctattc 229  Q
    |||||||||||||||||||||||||||||    
T  32943672 catatgagataccgaagaataagctattc 32943700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 37179425 - 37179648
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||||||||||||||||| ||||| ||| | |||||||||||||||   ||||||||||| || || |||||||||||||||||||||||||     
T  37179425 atagtgaaaatcgtgaatatttttggcattgtgatag-cattccgcccatttcggtaagataaagaaaacttaatttatcataactagttcctgccaaga 37179523  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          | |||  |||||||||||||||| |||||||||||||||| ||| ||||||  ||||| ||||||||| ||||||||| |||||||||||||||    
T  37179524 aaaaaagtgtagcgccaataaatccatgagatattatttgtaaaacagcctcgttgaacccaatatcacttatagaaccaattcctagaattatgaaacc 37179623  T
Q  201 catatgagataccgaagaataagct 225  Q
    |||||||||||||||||||||||||    
T  37179624 catatgagataccgaagaataagct 37179648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 53439779 - 53440005
Alignment:
Q  5 tgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagnnnnn 104  Q
    ||||||| ||||||||||||||||||||||| | |||| |||||||||| |||||||||||||||| |||||||||||||||||||||| |||||         
T  53439779 tgaaaattgtgaatatttttgacattgggatagccattgcgcccatttcgtcaagataaagaagacgtagtttatcataactagttcctaccaagaaaaa 53439878  T
Q  105 nn--gggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaaccca 202  Q
        |||||   ||||||||||||||| ||||||||||||||||||||||| |||| ||||| ||| ||||| ||||||||| ||||||||||||||  |    
T  53439879 aaaggggtagctccaataaatccatgagatattatttgtaaaacggccccgctgagcccaatatcatttatagaaccaattcctagaattatgaaactta 53439978  T
Q  203 tatgagataccgaagaataagctattc 229  Q
    |||||||||| ||||||||||||||||    
T  53439979 tatgagatactgaagaataagctattc 53440005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 32147462 - 32147688
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagn 100  Q
    ||||||||||||||||||||||||||||||||||  | ||||||||||||||  ||| |||||||||||| |||||||||||||||||| | ||| |||     
T  32147462 atagtgaaaatcgtgaatatttttgacattggga--gccattccgcccattttgtcaggataaagaagacgtagtttatcataactagtacttgcgaaga 32147559  T
Q  101 nnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacc 200  Q
          |||||    |||||||||||||| ||||||||||| ||| |||||||||||| ||||| ||||||||| |||||| || ||||||||||||||     
T  32147560 aaaaaagggtagcatcaataaatccatgagatattatttgtcaaatggccccgttgagcccaatatcacttatagaaccaactcctagaattatgaaact 32147659  T
Q  201 catatgagataccgaagaataagctattc 229  Q
    |||||||||||||||||||||||||||||    
T  32147660 catatgagataccgaagaataagctattc 32147688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 47 - 229
Target Start/End: Original strand, 1429809 - 1429991
Alignment:
Q  47 ccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagnnnnnnngggtaatgccaataaatccatgaaatattatttgtaaaac 146  Q
    ||||||| ||||||||||||| || ||||||||||||||||||||||||||||       |||||  |||||||||||||||| ||||||||||||||||    
T  1429809 ccatttcgtcaagataaagaaaacgtagtttatcataactagttcctgccaagaaaaaaagggtagcgccaataaatccatgagatattatttgtaaaac 1429908  T
Q  147 ggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacccatatgagataccgaagaataagctattc 229  Q
     | ||||||||| ||||| ||||||||| ||||||||| |||||||||||||| ||||||||||| ||||||||| |||||||    
T  1429909 agtcccgttgagcccaatatcacttatagaaccaattcctagaattatgaaactcatatgagatatcgaagaatacgctattc 1429991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 53397567 - 53397784
Alignment:
Q  5 tgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagnnnnn 104  Q
    ||||||| ||||||||||||| |||||| || |||||| |||||||||| |||||||||||||||| ||||||||||||| |||||||| |||||         
T  53397567 tgaaaattgtgaatatttttggcattggaatagtcattgcgcccatttcgtcaagataaagaagacgtagtttatcataattagttcctaccaagaaaaa 53397666  T
Q  105 nn-gggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacccat 203  Q
       ||||| |||||||||      || |||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| |||||||||||||| |      
T  53397667 aaagggtagtgccaataa------gagatattatttgtaaaacggccccgttgagcccaatatcatttataaaaccaattcctagaattatgaaactc-- 53397758  T
Q  204 atgagataccgaagaataagctattc 229  Q
    ||||||||||||||||||||||||||    
T  53397759 atgagataccgaagaataagctattc 53397784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 27868368 - 27868275
Alignment:
Q  136 atttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacccatatgagataccgaagaataagctattc 229  Q
    ||||||||||||||| ||||| | ||||| ||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  27868368 atttgtaaaacggcctcgttgcgaccaatatcacttatagaaccaattcctagaattataaaacccatatgagataccgaagaataagctattc 27868275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 50614893 - 50614824
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagac 70  Q
    ||||||||||||||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||||||    
T  50614893 atagtgaaaatcgtgaatatttttggcattgggatagtcattccacccatttcgtcaagataaagaagac 50614824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 117258 - 117174
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataac 85  Q
    ||||||||||||||||||||||||| ||||| |||   ||||||||||||||| |||||||||||||||| |||| |||||||||    
T  117258 atagtgaaaatcgtgaatatttttggcattgagatatccattccgcccatttcgtcaagataaagaagacgtagtctatcataac 117174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 44557390 - 44557346
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccg 45  Q
    ||||||||||||||||||||||||| ||||||||| | |||||||    
T  44557390 atagtgaaaatcgtgaatatttttggcattgggatagccattccg 44557346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 24268 - 24476
Alignment:
Q  21 ttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaagnnnnnnngggtaatgccaata 120  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||||||||  ||||||||||||| |||||||| |||||       |||||   ||||||    
T  24268 ttttggcattgggatagtcattccgcccatttcgtcaagataaagaagatgtagtttatcataattagttcctcccaagaaaaaaagggtagcaccaata 24367  T
Q  121 aatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacccatatgagataccgaagaat 220  Q
    |||| |||| |||||||||||||||||||| ||||||| ||| | ||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||    
T  24368 aatctatgagatattatttgtaaaacggcctcgttgagcccattatcacttatagaaccaattcctagaattatgaaacccatataagataccgaagaat 24467  T
Q  221 aagctattc 229  Q
    |||||||||    
T  24468 aagctattc 24476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 23052 - 22972
Alignment:
Q  5 tgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataac 85  Q
    |||||||||||| |||||||| ||||||||| | ||||||||||||||| |||||||||||||||| |||| |||||||||    
T  23052 tgaaaatcgtgattatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataac 22972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 5079316 - 5079088
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttcctgccaag- 99  Q
    |||||||||||||||||||||||||  |||||||| | | ||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||     
T  5079316 atagtgaaaatcgtgaatatttttggaattgggatagcctttccgcccatttcgtcaagataaagaagacgtagtctatcataactagttcctgccaaga 5079217  T
Q  100 nnnnnnngggtaatgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaac 199  Q
           ||| | ||||||||||||  ||| |||||||||||||||||||| |||||| |||| | ||||||||| ||||||||| ||||||||||||||    
T  5079216 aaaaaaagggcagtgccaataaatctgtgagatattatttgtaaaacggcctcgttga-gccagtgtcacttatagaaccaattcctagaattatgaaac 5079118  T
Q  200 ccatatgagataccgaagaataagctattc 229  Q
    ||| ||||||||| ||||||||| ||||||    
T  5079117 ccacatgagatacggaagaataaactattc 5079088  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 17246063 - 17246147
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataac 85  Q
    ||||||||||||||||||||||||| ||||||||| | |||||| |||||||| |||||||||||||||| |||| |||||||||    
T  17246063 atagtgaaaatcgtgaatatttttggcattgggatagccattcctcccatttcgtcaagataaagaagacgtagtctatcataac 17246147  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 25839522 - 25839459
Alignment:
Q  166 tcacttataaaaccaattcgtagaattatgaaacccatatgagataccgaagaataagctattc 229  Q
    ||||||||| |||||| || |||||||||||||||||| ||| |||| ||||||||||||||||    
T  25839522 tcacttatagaaccaaatcttagaattatgaaacccatgtgatatacggaagaataagctattc 25839459  T

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Target: scaffold0148 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 113 - 228
Target Start/End: Original strand, 38472 - 38587
Alignment:
Q  113 tgccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacccatatgagatac 212  Q
    ||||||||||||||||| |||||||||||||||||||||||||||   |||| ||||||||| ||||||||| |||||||||||||||||||||||||||    
T  38472 tgccaataaatccatgatatattatttgtaaaacggccccgttgaactcaatatcacttatataaccaattcctagaattatgaaacccatatgagatac 38571  T
Q  213 cgaagaataagctatt 228  Q
    ||||||||||||||||    
T  38572 cgaagaataagctatt 38587  T

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Target: scaffold0148; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 35722 - 35812
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataactagttc 91  Q
    |||||||||||| |||||||||||| ||||||||| || ||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  35722 atagtgaaaatcatgaatatttttggcattgggatagttattccgcccatttcatcaagataaagaagacgtagtctatcataactagttc 35812  T

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Target: scaffold0002 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 115 - 229
Target Start/End: Complemental strand, 172393 - 172279
Alignment:
Q  115 ccaataaatccatgaaatattatttgtaaaacggccccgttgaggccaatttcacttataaaaccaattcgtagaattatgaaacccatatgagataccg 214  Q
    ||||||||||||||| ||||||||||||||| |||||||||||| ||| | ||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  172393 ccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctagaattatgaaacccatatgagataccg 172294  T
Q  215 aagaataagctattc 229  Q
    |||||||||||||||    
T  172293 aagaataagctattc 172279  T

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Target: scaffold0003 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 239825 - 239741
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagacatagtttatcataac 85  Q
    ||||||||||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||||||||| |||| |||||||||    
T  239825 atagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataac 239741  T

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Target: scaffold0385 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 9772 - 9703
Alignment:
Q  1 atagtgaaaatcgtgaatatttttgacattgggattgtcattccgcccatttcatcaagataaagaagac 70  Q
    ||||||||||||||||||||||||  ||||||||| ||||||||||||||||| ||||||||||||||||    
T  9772 atagtgaaaatcgtgaatattttttgcattgggatagtcattccgcccatttcgtcaagataaagaagac 9703  T

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