View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16974_low_54 (Length: 232)
Name: NF16974_low_54
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 56230559 - 56230468
Alignment:
| Q |
128 |
taaaagagtggacctgttgcaacggaagcctgtgtgatcactctgacaagttcctttccaccttgagggaatgggccctatcccttcatctc |
219 |
Q |
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| T |
56230559 |
taaaagagtggacctgttgcaacggaagcctgtgtgatcactctgacaagttcctttccaccttgagggaatgggccctatcccttcatctc |
56230468 |
T |
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Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 39188366 - 39188286
Alignment:
| Q |
139 |
acctgttgcaacggaagcctgtgtgatcactctgacaagttcctttccaccttgagggaatgggccctatcccttcatctc |
219 |
Q |
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| T |
39188366 |
acctgttgcaacggaagcctgtgtgatcattctgacaagttcctttccaccttgagggaatgggccctatcccttcatctc |
39188286 |
T |
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