View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16974_low_6 (Length: 641)

Name: NF16974_low_6
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16974_low_6
NF16974_low_6
[»] chr7 (18 HSPs)
chr7 (349-623)||(2335239-2335501)
chr7 (26-171)||(2335724-2335869)
chr7 (221-367)||(2335577-2335723)
chr7 (26-176)||(2319322-2319473)
chr7 (437-623)||(2322080-2322262)
chr7 (426-623)||(2326368-2326563)
chr7 (26-195)||(2326134-2326305)
chr7 (417-617)||(1556595-1556791)
chr7 (439-617)||(1089427-1089601)
chr7 (437-623)||(3954367-3954549)
chr7 (409-617)||(1563843-1564047)
chr7 (410-617)||(1540543-1540746)
chr7 (408-617)||(1605154-1605359)
chr7 (527-623)||(2338550-2338646)
chr7 (527-617)||(1549881-1549971)
chr7 (527-623)||(2330694-2330790)
chr7 (408-617)||(1106767-1106972)
chr7 (442-510)||(1597283-1597351)
[»] chr8 (4 HSPs)
chr8 (405-617)||(18738419-18738626)
chr8 (405-617)||(18743383-18743590)
chr8 (417-615)||(18748361-18748555)
chr8 (527-615)||(18722815-18722903)
[»] scaffold0491 (1 HSPs)
scaffold0491 (417-615)||(5202-5396)


Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 349 - 623
Target Start/End: Complemental strand, 2335501 - 2335239
Alignment:
Q  349 gaaaaattcctacgaaaaaacctattagaatggataaactaaatattaattcaagcttctgaagtgtttcttgcaagggttcccaacgtgaaataatgct 448  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||    
T  2335501 gaaaaattcctaagaaaaaacctattagaatggataaactaaatattaattcaagcttctgaagtgtttcttgcaagggt---------gaaataatgct 2335411  T
Q  449 tttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggtgtgtgtacgttcaatggaaaaactctcc-gacgcacattt 547  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||  ||||| |||||    
T  2335410 tttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggtgt----acgttcaatggaaaaactctcatgacgcgcattt 2335315  T
Q  548 cattgttggtcaagagcaaggattgagatttaagcatgcaaatgctacaatgacaacacgaattatgtcaagtaaa 623  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2335314 cattgttggtcaagagcaaggattgagatttaagcatgcaaatgctacaatgacaacacgaattatgtcaagtaaa 2335239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 26 - 171
Target Start/End: Complemental strand, 2335869 - 2335724
Alignment:
Q  26 atattcagtacgatttaatgattagactcattgattgtgctacacatgtttgacgaaattagatataaaagtcttgtgtgaacatggaaaaatttaatag 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  2335869 atattcagtacgatttaatgattagactcattgattgtgctacacatgtttgacgaaattagatataaaagtctagtgtgaagatggaaaaatttaatag 2335770  T
Q  126 cattatttatgaaggatacatgtttttctcttttgcatcattcttt 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  2335769 cattatttatgaaggatacatgtttttctcttttgcatcattcttt 2335724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 221 - 367
Target Start/End: Complemental strand, 2335723 - 2335577
Alignment:
Q  221 tggtacatgctggaccaaaagaagtaagattctttccacacgctatggccaaacttacattagaaatcttgatatttcctacgatttccgagaaaaacag 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2335723 tggtacatgctggaccaaaagaagtaagattctttccacacgctattgccaaacttacattagaaatcttgatatttcctacgatttccgagaaaaacag 2335624  T
Q  321 ttatctctaaaatgcaatgattttcaaagaaaaattcctacgaaaaa 367  Q
     |||||||||||| |||||||||||||||| ||||||||||||||||    
T  2335623 gtatctctaaaatacaatgattttcaaagacaaattcctacgaaaaa 2335577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 26 - 176
Target Start/End: Complemental strand, 2319473 - 2319322
Alignment:
Q  26 atattcagtacgatttaatgattagactcattgattgtgctacacatgtttgacgaaattagatataaaagtcttgtgtgaacatggaaaa-atttaata 124  Q
    |||||| |||||||| ||||||||||||||||||| || |||||||||| | | || |||||||||||||||||||||||||||||||||| ||||||||    
T  2319473 atattcggtacgattgaatgattagactcattgatagtactacacatgtatcatgacattagatataaaagtcttgtgtgaacatggaaaatatttaata 2319374  T
Q  125 gcattatttatgaaggatacatgtttttctcttttgcatcattctttgaagg 176  Q
    |||| |||||||||||| ||| ||||||||| ||||||||||||||||||||    
T  2319373 gcatcatttatgaaggagacaagtttttctcctttgcatcattctttgaagg 2319322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 437 - 623
Target Start/End: Complemental strand, 2322262 - 2322080
Alignment:
Q  437 tgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggtgtgtgtacgttcaatggaaaaactctcc 536  Q
    |||||||||||||||| ||||| ||| || ||||||| ||  ||||| |||||||||||||| |||||||||||    | ||||| ||||||||||||      
T  2322262 tgaaataatgcttttaattcttgactcatcagttgctgcacagaaatttcactcaaaggaatgcttaatggtgt----aagttcagtggaaaaactctgt 2322167  T
Q  537 gacgcacatttcattgttggtcaagagcaaggattgagatttaagcatgcaaatgctacaatgacaacacgaattatgtcaagtaaa 623  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||   || |||||||||||||||||||||||    
T  2322166 gacgcacatttcattgttggtcgagagaaaggattgagatttaagcaagcaaatgctattgtggcaacacgaattatgtcaagtaaa 2322080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 426 - 623
Target Start/End: Complemental strand, 2326563 - 2326368
Alignment:
Q  426 ggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggtgtgtgtacgttcaatgg 525  Q
    ||||||| || |||||||||  ||||||||||| ||| || ||||||| || |||||| |||||| || |||||||| |||||||    | |||||||||    
T  2326563 ggttcccgacatgaaataatatttttagttcttgactcatgagttgctgcactgaaatttcactcgaaagaatacttgatggtgt----aggttcaatgg 2326468  T
Q  526 aaaaactctccgacgcacatttcattgttggtcaagagcaaggattgagatttaagcatgcaaatgctacaatgacaacacgaat--tatgtcaagtaaa 623  Q
     ||||||||  ||| |||||||||||||||||| |||| ||||||||||||||||| ||||||||||||| | | ||||||||||  |||||||||||||    
T  2326467 caaaactctgtgacacacatttcattgttggtcgagagaaaggattgagatttaagtatgcaaatgctactaaggcaacacgaattatatgtcaagtaaa 2326368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 2326305 - 2326134
Alignment:
Q  26 atattcagtacgatttaatgattagactcattgattgtgctacacatgtttgacgaaatt-agatataaaagtcttgtgtgaacatggaaaaa--tttaa 122  Q
    |||||| ||||||| ||||||||||||| |||||| ||||||||||||| | |||| ||| ||| ||||||||||| ||||||||| ||||||  | |||    
T  2326305 atattctgtacgatataatgattagactaattgatggtgctacacatgtgtcacgacatttagaaataaaagtcttatgtgaacatagaaaaaaatgtaa 2326206  T
Q  123 tagcattatttatgaaggatacatgtttttctcttttgcatcattctttgaaggtagacatgacaacaatttt 195  Q
     ||||| ||||| ||||||||||||| |||||| | |||||||||||||||| |  || ||||||||||||||    
T  2326205 aagcatcatttacgaaggatacatgtatttctcctatgcatcattctttgaaag-ggaaatgacaacaatttt 2326134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 417 - 617
Target Start/End: Original strand, 1556595 - 1556791
Alignment:
Q  417 tcttgcaagggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggtgtgtgtac 516  Q
    |||| ||||||||| |||  | ||||||||| || ||||||||||| |||||||| | || |||||| |||||||||||||| |||||||||||    |     
T  1556595 tctttcaagggttctcaatataaaataatgcattgagttcttcactcattagttgttgcactgaaatttcactcaaaggaatgcttaatggtgt----aa 1556690  T
Q  517 gttcaatggaaaaactctccgacgcacatttcattgttggtcaagagcaaggattgagatttaagcatgcaaatgctacaatgacaacacgaattatgtc 616  Q
    ||||| ||  |||||| |  ||| ||| |||||||||||||| |||   |||||||| |||||||||||||||||| || | ||||||| ||||||||||    
T  1556691 gttcagtgacaaaactttgtgacacacgtttcattgttggtcgagaatgaggattgatatttaagcatgcaaatgcaaccacgacaacatgaattatgtc 1556790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 439 - 617
Target Start/End: Complemental strand, 1089601 - 1089427
Alignment:
Q  439 aaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggtgtgtgtacgttcaatggaaaaactctccga 538  Q
    |||||||||||| ||||||| ||| |  ||||||| ||||||||| |||||||||||| | |||||||||||  |     ||| ||| |||||| |  ||    
T  1089601 aaataatgctttgagttcttgactcaagagttgctgcattgaaatttcactcaaaggagttcttaatggtgtcagc----tcagtggcaaaactttgtga 1089506  T
Q  539 cgcacatttcattgttggtcaagagcaaggattgagatttaagcatgcaaatgctacaatgacaacacgaattatgtca 617  Q
    | ||| |||||||||||||| ||| | |||||||||||||||||||||||||||||| | | ||||| |||||||||||    
T  1089505 cacacgtttcattgttggtcgagaacgaggattgagatttaagcatgcaaatgctaccacggcaacatgaattatgtca 1089427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 437 - 623
Target Start/End: Original strand, 3954367 - 3954549
Alignment:
Q  437 tgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggtgtgtgtacgttcaatggaaaaactctcc 536  Q
    |||||||||||||| ||||||| | | |  ||||||| || |||||| || ||||||||||| |||||||||||    |   |||||||||||||| |      
T  3954367 tgaaataatgctttgagttcttgattcacgagttgcttcactgaaatttctctcaaaggaatgcttaatggtgt----aacctcaatggaaaaactttgt 3954462  T
Q  537 gacgcacatttcattgttggtcaagagcaaggattgagatttaagcatgcaaatgctacaatgacaacacgaattatgtcaagtaaa 623  Q
    ||| ||| |||||||||||||| |||| |||||||  |||||||||||||| ||||||| |  |||||| |||||||||||||||||    
T  3954463 gacacacttttcattgttggtctagaggaaggatttggatttaagcatgcagatgctactacaacaacatgaattatgtcaagtaaa 3954549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 409 - 617
Target Start/End: Original strand, 1563843 - 1564047
Alignment:
Q  409 gaagtgtttcttgcaagggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggt 508  Q
    ||||| |||||| |||||| ||||||  | |||||||||||  ||||||||||| |||||||||| || |||||| |||||||||||||  ||||| |      
T  1563843 gaagtttttctttcaaggggtcccaatataaaataatgcttcgagttcttcactcattagttgctgcactgaaatttcactcaaaggaaggcttaacg-- 1563940  T
Q  509 gtgtgtacgttcaatggaaaaactctccgacgcacatttcattgttggtcaagagcaaggattgagatttaagcatgcaaatgctacaatgacaacacga 608  Q
      ||||  | ||| ||| |||||  |  ||  |||||||||||||||||| ||| | ||||||||||||||| | |||||||||||| | | ||||| ||    
T  1563941 --gtgtcagctcagtggcaaaacattgtgatacacatttcattgttggtcgagaacgaggattgagatttaaacttgcaaatgctaccacggcaacatga 1564038  T
Q  609 attatgtca 617  Q
    |||||||||    
T  1564039 attatgtca 1564047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 410 - 617
Target Start/End: Original strand, 1540543 - 1540746
Alignment:
Q  410 aagtgtttcttgcaagggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggtg 509  Q
    |||| |||||| |||| ||||||||  | |||||||||||| ||||||||||| |||||||||| || |||||| |||||||||||||| || || |       
T  1540543 aagtatttctttcaagagttcccaatataaaataatgctttgagttcttcactcattagttgctccactgaaatttcactcaaaggaatgctaaacg--- 1540639  T
Q  510 tgtgtacgttcaatggaaaaactctccgacgcacatttcattgttggtcaagagcaaggattgagatttaagcatgcaaatgctacaatgacaacacgaa 609  Q
     ||||| | ||  ||  |||||| |  ||| ||| |||||||||||||| ||| | |||||||  ||||||||||||||||||||| | |  |||| |||    
T  1540640 -gtgtaagctcggtgacaaaactttgtgacacacgtttcattgttggtcgagaacgaggattgccatttaagcatgcaaatgctaccagggaaacatgaa 1540738  T
Q  610 ttatgtca 617  Q
    ||||||||    
T  1540739 ttatgtca 1540746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 408 - 617
Target Start/End: Complemental strand, 1605359 - 1605154
Alignment:
Q  408 tgaagtgtttcttgcaagggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatgg 507  Q
    |||||| |||||| || ||||||||||  | ||||||| |||| ||||||| ||| || ||||| | || |||||| |||||||||||||| ||||||||    
T  1605359 tgaagtttttctttcaggggttcccaatataaaataatcctttcagttcttgactcatgagttgttgcactgaaatttcactcaaaggaatgcttaatgg 1605260  T
Q  508 tgtgtgtacgttcaatggaaaaactctccgacgcacatttcattgttggtcaagagcaaggattgagatttaagcatgcaaatgctacaatgacaacacg 607  Q
    ||||     | ||  ||  |||||| |  ||| ||| |||||||||||||| ||| | |||||||| |||||||||||||||||| || | | ||||| |    
T  1605259 tgtg----agctccgtgacaaaactttgtgacacacgtttcattgttggtcgagaacgaggattgatatttaagcatgcaaatgcaaccacggcaacatg 1605164  T
Q  608 aattatgtca 617  Q
    ||||||||||    
T  1605163 aattatgtca 1605154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 527 - 623
Target Start/End: Complemental strand, 2338646 - 2338550
Alignment:
Q  527 aaaactctccgacgcacatttcattgttggtcaagagcaaggattgagatttaagcatgcaaatgctacaatgacaacacgaattatgtcaagtaaa 623  Q
    ||||||||  ||| ||| |||||||| ||||| || |||||| ||||||||||||||| |||||||||| | | |||||||||||||||||||||||    
T  2338646 aaaactctgtgacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaattatgtcaagtaaa 2338550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 527 - 617
Target Start/End: Original strand, 1549881 - 1549971
Alignment:
Q  527 aaaactctccgacgcacatttcattgttggtcaagagcaaggattgagatttaagcatgcaaatgctacaatgacaacacgaattatgtca 617  Q
    |||||| || ||| |||||||||||||||||| ||||| ||||||||||||||| |||||||||||||| | | ||||  |||||||||||    
T  1549881 aaaactttctgacacacatttcattgttggtcgagagcgaggattgagatttaaacatgcaaatgctaccacggcaacttgaattatgtca 1549971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 527 - 623
Target Start/End: Complemental strand, 2330790 - 2330694
Alignment:
Q  527 aaaactctccgacgcacatttcattgttggtcaagagcaaggattgagatttaagcatgcaaatgctacaatgacaacacgaattatgtcaagtaaa 623  Q
    ||||||||  ||| ||| |||||||| ||||| || |||||| ||||||||||||||| |||||||||| | | |||||||||||||||| ||||||    
T  2330790 aaaactctgtgacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaattatgtccagtaaa 2330694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 408 - 617
Target Start/End: Complemental strand, 1106972 - 1106767
Alignment:
Q  408 tgaagtgtttcttgcaagggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatgg 507  Q
    |||||| |||||| || ||||||||||  | ||||||| |||| ||||||| ||   | ||||| | || |||||| |||||||||||||| ||||||||    
T  1106972 tgaagtttttctttcaggggttcccaatataaaataatcctttcagttcttgacccgtgagttgttgcactgaaatttcactcaaaggaatgcttaatgg 1106873  T
Q  508 tgtgtgtacgttcaatggaaaaactctccgacgcacatttcattgttggtcaagagcaaggattgagatttaagcatgcaaatgctacaatgacaacacg 607  Q
    ||||     | ||  ||  |||||| |  ||  ||| |||||||||||||| ||| | |||||||| |||||||||||||||||| || | | ||||| |    
T  1106872 tgtg----agctccgtgacaaaactttgtgagacacgtttcattgttggtcgagaacgaggattgatatttaagcatgcaaatgcaaccacggcaacatg 1106777  T
Q  608 aattatgtca 617  Q
    ||||||||||    
T  1106776 aattatgtca 1106767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 442 - 510
Target Start/End: Complemental strand, 1597351 - 1597283
Alignment:
Q  442 taatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggtgt 510  Q
    ||||||| | ||||||||||| |||||||||| ||  ||||| |||||||||||||| |||||||||||    
T  1597351 taatgctctgagttcttcactcattagttgctgcacggaaatttcactcaaaggaatgcttaatggtgt 1597283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 7e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 405 - 617
Target Start/End: Original strand, 18738419 - 18738626
Alignment:
Q  405 ttctgaagtgtttcttgcaagggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaa 504  Q
    ||||||||| |||||| ||||||||| |||    ||| |||||||| ||||||||||| |||||||||| || |||||| ||||| ||||||||||||||    
T  18738419 ttctgaagt-tttctttcaagggttcgcaatacaaaacaatgctttaagttcttcactcattagttgctgcactgaaatttcactgaaaggaatacttaa 18738517  T
Q  505 tggtgtgtgtacgttcaatggaaaaactctccgacgcacatttcattgttggtcaagagcaaggattgagatttaagcatgcaaatgctacaatgacaac 604  Q
    | |||     | | ||  ||  |||||| | |||| |||||||||||||||||| ||| | |||||||| ||||||||||||||||||||| | | || |    
T  18738518 tcgtgg----aagctcggtgacaaaactttgcgacacacatttcattgttggtcgagaacgaggattgacatttaagcatgcaaatgctaccacggcagc 18738613  T
Q  605 acgaattatgtca 617  Q
    | |||||||||||    
T  18738614 atgaattatgtca 18738626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 405 - 617
Target Start/End: Original strand, 18743383 - 18743590
Alignment:
Q  405 ttctgaagtgtttcttgcaagggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaa 504  Q
    ||||||||| |||||| ||||||||| |||    ||| |||||||| ||||||||||| |||||||||| || |||||| ||||| ||||||||||||||    
T  18743383 ttctgaagt-tttctttcaagggttcgcaatacaaaacaatgctttaagttcttcactcattagttgctgcactgaaatttcactgaaaggaatacttaa 18743481  T
Q  505 tggtgtgtgtacgttcaatggaaaaactctccgacgcacatttcattgttggtcaagagcaaggattgagatttaagcatgcaaatgctacaatgacaac 604  Q
    | |||     | | ||  ||  |||||| | |||| |||||||||||||||||| ||| | |||||||| ||||||||||||||||||||| | | || |    
T  18743482 tcgtgg----aagctcggtgacaaaactttgcgacacacatttcattgttggtcgagaacgaggattgacatttaagcatgcaaatgctaccacggcagc 18743577  T
Q  605 acgaattatgtca 617  Q
    | |||||||||||    
T  18743578 atgaattatgtca 18743590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 417 - 615
Target Start/End: Original strand, 18748361 - 18748555
Alignment:
Q  417 tcttgcaagggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggtgtgtgtac 516  Q
    |||| ||||||||| |||  | ||| |||||||| ||||||||||| |||||||||| || |||||| ||||| |||||||||||||||     ||| |     
T  18748361 tctttcaagggttcgcaatataaaacaatgctttgagttcttcactcattagttgctgcactgaaatttcactgaaaggaatacttaat----cgtggaa 18748456  T
Q  517 gttcaatggaaaaactctccgacgcacatttcattgttggtcaagagcaaggattgagatttaagcatgcaaatgctacaatgacaacacgaattatgt 615  Q
    | ||  ||  |||||| | |||| |||||||||||||||||| ||| | |||||||| ||||||||||||||| || |||| | ||| | |||||||||    
T  18748457 gctcggtgacaaaactttgcgacacacatttcattgttggtcgagaacgaggattgacatttaagcatgcaaaggcaacaacggcaaaatgaattatgt 18748555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 527 - 615
Target Start/End: Original strand, 18722815 - 18722903
Alignment:
Q  527 aaaactctccgacgcacatttcattgttggtcaagagcaaggattgagatttaagcatgcaaatgctacaatgacaacacgaattatgt 615  Q
    |||||| | |||| |||||||||||||||||| ||| | |||||||| ||||||||||||||| || |||| | ||| | |||||||||    
T  18722815 aaaactttgcgacacacatttcattgttggtcgagaacgaggattgacatttaagcatgcaaaggcaacaacggcaaaatgaattatgt 18722903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 417 - 615
Target Start/End: Original strand, 5202 - 5396
Alignment:
Q  417 tcttgcaagggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggtgtgtgtac 516  Q
    |||| ||||||||| |||  | ||| |||||||| ||||||||||| |||||||||| || |||||| ||||| |||||||||||||||     ||| |     
T  5202 tctttcaagggttcgcaatataaaacaatgctttgagttcttcactcattagttgctgcactgaaatttcactgaaaggaatacttaat----cgtggaa 5297  T
Q  517 gttcaatggaaaaactctccgacgcacatttcattgttggtcaagagcaaggattgagatttaagcatgcaaatgctacaatgacaacacgaattatgt 615  Q
    | ||  ||  |||||| | |||| |||||||||||||||||| ||| | |||||||| ||||||||||||||| || |||| | ||| | |||||||||    
T  5298 gctcggtgacaaaactttgcgacacacatttcattgttggtcgagaacgaggattgacatttaagcatgcaaaggcaacaacggcaaaatgaattatgt 5396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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