View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16974_low_63 (Length: 218)
Name: NF16974_low_63
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_low_63 |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 45888720 - 45888911
Alignment:
| Q |
15 |
aatatactttaaattatattttacaaagaagaaaa--aactcaaaagtaatacaaagtccgacaaatacaagtctgaccaacacaggaaaagaaccgtgg |
112 |
Q |
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| T |
45888720 |
aatatactttaaattatattttacaaagaagaaaaaaaactcaaaagtaatacaaagtctgacaaatacaagtctgaccaatacaagaaaagaaccgtgg |
45888819 |
T |
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| Q |
113 |
cagt-cattgcaactatgaatagtttagctactcatatccaatggcaattatccaagataatgtgacataaaagcattgattaatgtgttac |
203 |
Q |
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| T |
45888820 |
cagtgcattgcaactatggataatttagctactcatatccaatgccaattatccaagttactatgacacaaaagcattggttaatgtattac |
45888911 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 1995794 - 1995867
Alignment:
| Q |
99 |
gaaaagaaccgtggcagt-cattgcaactatgaatagtttagctactcatatccaatggcaattatccaagata |
171 |
Q |
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| T |
1995794 |
gaaaagaatcgtggcaatgcattgctactatggttggtttagctactcatatccaatgccaattatccaagata |
1995867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 203
Target Start/End: Original strand, 35424332 - 35424439
Alignment:
| Q |
96 |
caggaaaagaaccgtggcagt-cattgcaactatgaatagtttagctactcatatccaatggcaattatccaagataatgtgacataaaagcattgatta |
194 |
Q |
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| T |
35424332 |
cagggaaagaaccgtggtaatgcattgctactatggata-tttagctactcatacccggtgccaattatctaagatactatgacacaaatgcattgatta |
35424430 |
T |
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| Q |
195 |
atgtgttac |
203 |
Q |
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| T |
35424431 |
gagtgttac |
35424439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 201
Target Start/End: Complemental strand, 18565643 - 18565563
Alignment:
| Q |
121 |
gcaactatgaatagtttagctactcatatccaatggcaattatccaagataatgtgacataaaagcattgattaatgtgtt |
201 |
Q |
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| T |
18565643 |
gcaactatggagagtttggctactcttcttcaatgccaattatccaagatattgtgacacaaagacattggttattgtgtt |
18565563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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