View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16974_low_65 (Length: 211)
Name: NF16974_low_65
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_low_65 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 9 - 193
Target Start/End: Complemental strand, 34780919 - 34780735
Alignment:
| Q |
9 |
agaagcaaaggcaatcagaagaaacttaccacaacaagacccttgatttgctcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagca |
108 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34780919 |
agaaacaaagacaatcagaagaaacttaccacaacaagacccttgatttgttcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagca |
34780820 |
T |
|
| Q |
109 |
aagtgtcaagaaaaacaacattctgctcgccctctacgatttctccattttttcttttgttcacaatctcttgtcgtttcttgat |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34780819 |
aagtgtcaagaaaaacaacattctgctcgccatctacgatttctccattttttcttttgttcacaatctcttgtcgtttcttgat |
34780735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 27 - 193
Target Start/End: Original strand, 34763211 - 34763377
Alignment:
| Q |
27 |
aagaaacttaccacaacaagacccttgatttgctcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagcaaagtgtcaagaaaaacaa |
126 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34763211 |
aagaaactcaccacaacaagacccttgatttgttcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagcaaagtgtcaagaaaaacaa |
34763310 |
T |
|
| Q |
127 |
cattctgctcgccctctacgatttctccattttttcttttgttcacaatctcttgtcgtttcttgat |
193 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34763311 |
cattctgctcgccttctacgatttctccattttttcttttgttcacaatctcttgtcgtttcttgat |
34763377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 9 - 193
Target Start/End: Original strand, 34755217 - 34755401
Alignment:
| Q |
9 |
agaagcaaaggcaatcagaagaaacttaccacaacaagacccttgatttgctcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagca |
108 |
Q |
| |
|
|||| ||||| |||| |||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| || ||| ||||||||| |
|
|
| T |
34755217 |
agaaacaaagacaattagaataaacttaccacaacaagacccttgatttgttccttggtaattttgatgtccatggtctcatcctgagcatattcaagca |
34755316 |
T |
|
| Q |
109 |
aagtgtcaagaaaaacaacattctgctcgccctctacgatttctccattttttcttttgttcacaatctcttgtcgtttcttgat |
193 |
Q |
| |
|
|||| ||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34755317 |
aagtatcaagaaaaactacactctgctcgccctctatgatttctccattttttcttttgttcacaatctcttgtcgtttcttgat |
34755401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University