View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16974_low_68 (Length: 201)

Name: NF16974_low_68
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16974_low_68
NF16974_low_68
[»] chr6 (8 HSPs)
chr6 (98-158)||(20836794-20836854)
chr6 (17-79)||(18271774-18271836)
chr6 (17-79)||(20836708-20836770)
chr6 (98-157)||(12852123-12852182)
chr6 (98-133)||(18271854-18271889)
chr6 (17-67)||(33427741-33427791)
chr6 (121-157)||(18271892-18271928)
chr6 (122-158)||(20836696-20836732)
[»] chr4 (17 HSPs)
chr4 (98-158)||(10395307-10395367)
chr4 (98-158)||(43364106-43364166)
chr4 (20-79)||(18740060-18740119)
chr4 (126-165)||(23780448-23780487)
chr4 (17-78)||(23780323-23780384)
chr4 (17-73)||(19747496-19747552)
chr4 (17-73)||(19792254-19792310)
chr4 (103-155)||(23689245-23689297)
chr4 (17-51)||(7672621-7672655)
chr4 (98-158)||(42540317-42540372)
chr4 (98-133)||(7672695-7672730)
chr4 (98-140)||(19677851-19677893)
chr4 (17-51)||(48284308-48284342)
chr4 (98-139)||(327157-327198)
chr4 (122-158)||(4621933-4621969)
chr4 (122-158)||(18740098-18740134)
chr4 (122-158)||(23780311-23780347)
[»] chr2 (8 HSPs)
chr2 (98-158)||(27080923-27080983)
chr2 (17-79)||(33381966-33382028)
chr2 (98-140)||(5722933-5722975)
chr2 (31-79)||(14108685-14108733)
chr2 (98-133)||(33381912-33381947)
chr2 (98-158)||(1483960-1484020)
chr2 (17-78)||(13783354-13783415)
chr2 (110-155)||(14108607-14108652)
[»] chr5 (12 HSPs)
chr5 (17-79)||(43259828-43259890)
chr5 (98-165)||(27514374-27514436)
chr5 (98-158)||(10476407-10476472)
chr5 (98-142)||(19914485-19914529)
chr5 (122-158)||(5131276-5131312)
chr5 (17-56)||(5131261-5131300)
chr5 (98-133)||(43259774-43259809)
chr5 (44-78)||(22920935-22920969)
chr5 (124-158)||(43259866-43259900)
chr5 (122-158)||(6644812-6644848)
chr5 (123-166)||(22920914-22920955)
chr5 (122-166)||(27946961-27947005)
[»] chr7 (14 HSPs)
chr7 (107-158)||(27305666-27305717)
chr7 (101-158)||(10596203-10596260)
chr7 (17-79)||(4922618-4922680)
chr7 (101-141)||(10596070-10596110)
chr7 (31-79)||(10596001-10596049)
chr7 (31-79)||(10596134-10596182)
chr7 (99-133)||(19367271-19367305)
chr7 (99-132)||(4922578-4922611)
chr7 (122-166)||(19367190-19367234)
chr7 (123-158)||(23777120-23777155)
chr7 (98-133)||(43951392-43951427)
chr7 (17-63)||(23803131-23803177)
chr7 (112-150)||(42731190-42731228)
chr7 (122-158)||(23777250-23777286)
[»] chr3 (8 HSPs)
chr3 (98-157)||(55216685-55216744)
chr3 (17-79)||(36343736-36343798)
chr3 (17-79)||(33186242-33186304)
chr3 (98-143)||(54801792-54801837)
chr3 (98-137)||(29630072-29630111)
chr3 (98-133)||(33186188-33186223)
chr3 (98-130)||(40654233-40654265)
chr3 (36-79)||(8473199-8473242)
[»] chr8 (8 HSPs)
chr8 (98-158)||(30595575-30595635)
chr8 (17-79)||(26099346-26099408)
chr8 (31-79)||(30595519-30595567)
chr8 (17-79)||(387640-387701)
chr8 (98-160)||(387723-387780)
chr8 (98-140)||(18605352-18605394)
chr8 (22-67)||(35699628-35699673)
chr8 (122-166)||(18605273-18605317)
[»] scaffold0024 (3 HSPs)
scaffold0024 (121-165)||(60220-60264)
scaffold0024 (31-79)||(60114-60162)
scaffold0024 (31-63)||(60207-60239)
[»] chr1 (8 HSPs)
chr1 (98-158)||(8812528-8812583)
chr1 (21-67)||(47756374-47756420)
chr1 (98-140)||(47930895-47930937)
chr1 (98-141)||(5993732-5993775)
chr1 (98-133)||(32567239-32567274)
chr1 (17-60)||(45376462-45376505)
chr1 (124-158)||(45376452-45376486)
chr1 (46-79)||(45376512-45376545)


Alignment Details
Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 20836794 - 20836854
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  20836794 caaatgaaattgaattttagttaccgaactgaactgaactgtttcgaatcgaattgaactg 20836854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 18271774 - 18271836
Alignment:
Q  17 aactgtttcaaaccgaaccgaactgttccgaactgaactgaactgttattagtgatacctttg 79  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||    
T  18271774 aactgtttcaaaccgaactgaactgttccgaactgaactgaattgttattattgatacctttg 18271836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 20836708 - 20836770
Alignment:
Q  17 aactgtttcaaaccgaaccgaactgttccgaactgaactgaactgttattagtgatacctttg 79  Q
    |||||||||||||||||| |||||||||| ||||||| ||||||||||||| |||||||||||    
T  20836708 aactgtttcaaaccgaactgaactgttccaaactgaattgaactgttattattgatacctttg 20836770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 12852182 - 12852123
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaact 157  Q
    ||||||||||||||||||||||| | || ||||| |||||||||||||||||||||||||    
T  12852182 caaatgaaattgaattttagttatcaaagtgaaccgaactgtttcaaatcgaactgaact 12852123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 133
Target Start/End: Original strand, 18271854 - 18271889
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactg 133  Q
    |||||||||||||||||||||||| |||||||||||    
T  18271854 caaatgaaattgaattttagttactgaactgaactg 18271889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 33427741 - 33427791
Alignment:
Q  17 aactgtttcaaaccgaaccgaactgttccgaactgaactgaactgttatta 67  Q
    |||||||||||| ||||   |||||||||||||||||| ||||||||||||    
T  33427741 aactgtttcaaatcgaattaaactgttccgaactgaaccgaactgttatta 33427791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 18271892 - 18271928
Alignment:
Q  121 ccgaactgaactgaactgtttcaaatcgaactgaact 157  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  18271892 ccgaactgcactgaactgtttcgaatcgaactgaact 18271928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 20836696 - 20836732
Alignment:
Q  122 cgaactgaactgaactgtttcaaatcgaactgaactg 158  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  20836696 cgaactgaacggaactgtttcaaaccgaactgaactg 20836732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 10395367 - 10395307
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 158  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  10395367 caaatgaaattgaattttaattaccgaactgaactgaacagtttcaaatcgaactgaactg 10395307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 43364166 - 43364106
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 158  Q
    |||||||||||||| |||||||||| ||| ||||||||||||||  |||||||||||||||    
T  43364166 caaatgaaattgaagtttagttaccaaaccgaactgaactgttttgaatcgaactgaactg 43364106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 18740119 - 18740060
Alignment:
Q  20 tgtttcaaaccgaaccgaactgttccgaactgaactgaactgttattagtgatacctttg 79  Q
    ||||||||||||||| |||||||| |||||||||| |||||||||| | |||||||||||    
T  18740119 tgtttcaaaccgaactgaactgtttcgaactgaaccgaactgttataattgatacctttg 18740060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 23780448 - 23780487
Alignment:
Q  126 ctgaactgaactgtttcaaatcgaactgaactgaactgtt 165  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23780448 ctgaactgaactgtttcaaatcgaactgaactgaactgtt 23780487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 23780323 - 23780384
Alignment:
Q  17 aactgtttcaaaccgaaccgaactgttccgaactgaactgaactgttattagtgataccttt 78  Q
    |||||||||||||| ||| |||||||| |||||||||| ||| |||||||| ||||||||||    
T  23780323 aactgtttcaaaccaaactgaactgtttcgaactgaaccgaattgttattattgataccttt 23780384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 19747552 - 19747496
Alignment:
Q  17 aactgtttcaaaccgaaccgaactgttccgaactgaactgaactgttattagtgata 73  Q
    ||||||||||||| |||| ||||||||| ||||||||| |||||||||||| |||||    
T  19747552 aactgtttcaaactgaactgaactgttctgaactgaaccgaactgttattattgata 19747496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 19792254 - 19792310
Alignment:
Q  17 aactgtttcaaaccgaaccgaactgttccgaactgaactgaactgttattagtgata 73  Q
    ||||||||||||| |||| ||||||||| ||||||||| |||||||||||| |||||    
T  19792254 aactgtttcaaactgaactgaactgttctgaactgaaccgaactgttattattgata 19792310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 23689297 - 23689245
Alignment:
Q  103 gaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaa 155  Q
    ||||| |||||||||||||||||||||| ||||||||||| ||| ||||||||    
T  23689297 gaaatcgaattttagttaccgaactgaattgaactgtttcgaatggaactgaa 23689245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 7672621 - 7672655
Alignment:
Q  17 aactgtttcaaaccgaaccgaactgttccgaactg 51  Q
    |||||||||||||||||||||||||||||||||||    
T  7672621 aactgtttcaaaccgaaccgaactgttccgaactg 7672655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 42540317 - 42540372
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 158  Q
    ||||||||||||| |||||||||||     ||||||||||||||||| |||||||||||||    
T  42540317 caaatgaaattgagttttagttacc-----gaactgaactgtttcaagtcgaactgaactg 42540372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 133
Target Start/End: Original strand, 7672695 - 7672730
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactg 133  Q
    ||||||||||||||||||||||||| ||||||||||    
T  7672695 caaatgaaattgaattttagttaccaaactgaactg 7672730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 19677893 - 19677851
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactgaactgtt 140  Q
    |||| ||||| ||||||||||||||||| ||||||||||||||    
T  19677893 caaaagaaatcgaattttagttaccgaattgaactgaactgtt 19677851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 48284342 - 48284308
Alignment:
Q  17 aactgtttcaaaccgaaccgaactgttccgaactg 51  Q
    |||||||||||||| ||||||||||||||||||||    
T  48284342 aactgtttcaaaccaaaccgaactgttccgaactg 48284308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 327157 - 327198
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactgaactgt 139  Q
    ||||||||||||||||||||||||  ||||||||| ||||||    
T  327157 caaatgaaattgaattttagttacaaaactgaactaaactgt 327198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 4621933 - 4621969
Alignment:
Q  122 cgaactgaactgaactgtttcaaatcgaactgaactg 158  Q
    |||||||||||||||||||||||| |||| |||||||    
T  4621933 cgaactgaactgaactgtttcaaaccgaattgaactg 4621969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 18740134 - 18740098
Alignment:
Q  122 cgaactgaactgaactgtttcaaatcgaactgaactg 158  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  18740134 cgaactgaactgaattgtttcaaaccgaactgaactg 18740098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 23780311 - 23780347
Alignment:
Q  122 cgaactgaactgaactgtttcaaatcgaactgaactg 158  Q
    |||||||||||||||||||||||| | ||||||||||    
T  23780311 cgaactgaactgaactgtttcaaaccaaactgaactg 23780347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 27080983 - 27080923
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 158  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  27080983 caaatgaaattgaattttagttaccaaactgaactgaactgtttcgaatcgaactgaactg 27080923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 33382028 - 33381966
Alignment:
Q  17 aactgtttcaaaccgaaccgaactgttccgaactgaactgaactgttattagtgatacctttg 79  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||    
T  33382028 aactgtttcaaaccgaactgaactgttccgaactgaattgaactgttattattgatacctttg 33381966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 5722933 - 5722975
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactgaactgtt 140  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  5722933 caaacgaaattgaattttagttaccgaactgaactgaactgtt 5722975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 14108733 - 14108685
Alignment:
Q  31 gaaccgaactgttccgaactgaactgaactgttattagtgatacctttg 79  Q
    |||| |||||||||| ||||||||||||||||||||| |||||||||||    
T  14108733 gaactgaactgttccaaactgaactgaactgttattattgatacctttg 14108685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 133
Target Start/End: Complemental strand, 33381947 - 33381912
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactg 133  Q
    ||||||||||||||||||||||||||||||||||||    
T  33381947 caaatgaaattgaattttagttaccgaactgaactg 33381912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 1484020 - 1483960
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 158  Q
    |||| |||||| |||||||| |||| || ||||| ||||||||||||||||||| ||||||    
T  1484020 caaacgaaattaaattttagctaccaaattgaaccgaactgtttcaaatcgaacggaactg 1483960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 13783415 - 13783354
Alignment:
Q  17 aactgtttcaaaccgaaccgaactgttccgaactgaactgaactgttattagtgataccttt 78  Q
    ||||||||||||| |||| |||||| |  ||| ||||| |||||||||||| ||||||||||    
T  13783415 aactgtttcaaacagaactgaactgatttgaattgaaccgaactgttattattgataccttt 13783354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 14108652 - 14108607
Alignment:
Q  110 aattttagttaccgaactgaactgaactgtttcaaatcgaactgaa 155  Q
    |||||||||||||||||||||||||| |||||| || | |||||||    
T  14108652 aattttagttaccgaactgaactgaattgtttcgaaccaaactgaa 14108607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 43259890 - 43259828
Alignment:
Q  17 aactgtttcaaaccgaaccgaactgttccgaactgaactgaactgttattagtgatacctttg 79  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  43259890 aactgtttcaaaccgaactgaactgttccgaactgaactgaactgttattattgatgcctttg 43259828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 27514436 - 27514374
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactgaactgtt 165  Q
    ||||||||||||||||||||||||||||||||     |||||||| |||||||||||||| |||||||    
T  27514436 caaatgaaattgaattttagttaccgaactga-----actgtttcgaatcgaactgaacttaactgtt 27514374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 10476472 - 10476407
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaact-----gaactgtttcaaatcgaactgaactg 158  Q
    |||| ||||||||||||||||||||||||||||||     |||||||||| |||||||||||||||    
T  10476472 caaacgaaattgaattttagttaccgaactgaactgaatcgaactgtttcgaatcgaactgaactg 10476407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 19914485 - 19914529
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactgaactgtttc 142  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||    
T  19914485 caaatgaaattgaattttagttaccgaactaaactgaactctttc 19914529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 5131312 - 5131276
Alignment:
Q  122 cgaactgaactgaactgtttcaaatcgaactgaactg 158  Q
    |||||||||||||||||||||||| ||||||||||||    
T  5131312 cgaactgaactgaactgtttcaaaccgaactgaactg 5131276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 5131300 - 5131261
Alignment:
Q  17 aactgtttcaaaccgaaccgaactgttccgaactgaactg 56  Q
    |||||||||||||||||| |||||||| ||||||||||||    
T  5131300 aactgtttcaaaccgaactgaactgtttcgaactgaactg 5131261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 133
Target Start/End: Complemental strand, 43259809 - 43259774
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactg 133  Q
    ||||||||||| ||||||||||||||||||||||||    
T  43259809 caaatgaaattaaattttagttaccgaactgaactg 43259774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 22920935 - 22920969
Alignment:
Q  44 ccgaactgaactgaactgttattagtgataccttt 78  Q
    |||||||||||||||||||||||| ||||||||||    
T  22920935 ccgaactgaactgaactgttattattgataccttt 22920969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 158
Target Start/End: Complemental strand, 43259900 - 43259866
Alignment:
Q  124 aactgaactgaactgtttcaaatcgaactgaactg 158  Q
    |||||||||||||||||||||| ||||||||||||    
T  43259900 aactgaactgaactgtttcaaaccgaactgaactg 43259866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 6644848 - 6644812
Alignment:
Q  122 cgaactgaactgaactgtttcaaatcgaactgaactg 158  Q
    |||||||||||||||||||||||| |||| |||||||    
T  6644848 cgaactgaactgaactgtttcaaaccgaattgaactg 6644812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 166
Target Start/End: Original strand, 22920914 - 22920955
Alignment:
Q  123 gaactgaactgaactgtttcaaatcgaactgaactgaactgtta 166  Q
    ||||||||||||  ||||||||| ||||||||||||||||||||    
T  22920914 gaactgaactga--tgtttcaaaccgaactgaactgaactgtta 22920955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 27946961 - 27947005
Alignment:
Q  122 cgaactgaactgaactgtttcaaatcgaactgaactgaactgtta 166  Q
    |||||||| ||||| ||||| |||||||||||||| |||||||||    
T  27946961 cgaactgagctgaattgttttaaatcgaactgaacagaactgtta 27947005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 27305666 - 27305717
Alignment:
Q  107 ttgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 158  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27305666 ttgaattttagttaccggactgaactgaactgtttcaaatcgaactgaactg 27305717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 10596203 - 10596260
Alignment:
Q  101 atgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 158  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||    
T  10596203 atgaaattgaattttagttaccgaactgaactgaactgttttgaatcgaattgaactg 10596260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 4922680 - 4922618
Alignment:
Q  17 aactgtttcaaaccgaaccgaactgttccgaactgaactgaactgttattagtgatacctttg 79  Q
    |||||||| |||| |||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  4922680 aactgttttaaactgaactgaactgttccgaactgaactaaactgttattattgatacctttg 4922618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 10596070 - 10596110
Alignment:
Q  101 atgaaattgaattttagttaccgaactgaactgaactgttt 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10596070 atgaaattgaattttagttaccgaactgaactgaactgttt 10596110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 10596001 - 10596049
Alignment:
Q  31 gaaccgaactgttccgaactgaactgaactgttattagtgatacctttg 79  Q
    |||| |||||||||||||||||| ||||||||||||| |||||||||||    
T  10596001 gaactgaactgttccgaactgaagtgaactgttattattgatacctttg 10596049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 10596134 - 10596182
Alignment:
Q  31 gaaccgaactgttccgaactgaactgaactgttattagtgatacctttg 79  Q
    |||| |||||||||||||||||| ||||||||||||| |||||||||||    
T  10596134 gaactgaactgttccgaactgaagtgaactgttattattgatacctttg 10596182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 19367271 - 19367305
Alignment:
Q  99 aaatgaaattgaattttagttaccgaactgaactg 133  Q
    |||||||||||||||||||||||||||||||||||    
T  19367271 aaatgaaattgaattttagttaccgaactgaactg 19367305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 4922611 - 4922578
Alignment:
Q  99 aaatgaaattgaattttagttaccgaactgaact 132  Q
    ||||||||||||||||||||||||||||||||||    
T  4922611 aaatgaaattgaattttagttaccgaactgaact 4922578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 19367190 - 19367234
Alignment:
Q  122 cgaactgaactgaactgtttcaaatcgaactgaactgaactgtta 166  Q
    |||||||||||||| |||||||||  |||||||||||||||||||    
T  19367190 cgaactgaactgaattgtttcaaacagaactgaactgaactgtta 19367234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 23777120 - 23777155
Alignment:
Q  123 gaactgaactgaactgtttcaaatcgaactgaactg 158  Q
    ||||||||||||||||||||||| ||||||||||||    
T  23777120 gaactgaactgaactgtttcaaaccgaactgaactg 23777155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 133
Target Start/End: Original strand, 43951392 - 43951427
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactg 133  Q
    ||||||||||||||||||| ||||||||||||||||    
T  43951392 caaatgaaattgaattttaattaccgaactgaactg 43951427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 23803131 - 23803177
Alignment:
Q  17 aactgtttcaaaccgaaccgaactgttccgaactgaactgaactgtt 63  Q
    |||||||||||||||||| ||| ||||||||||||||  ||||||||    
T  23803131 aactgtttcaaaccgaactgaattgttccgaactgaatcgaactgtt 23803177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 42731190 - 42731228
Alignment:
Q  112 ttttagttaccgaactgaactgaactgtttcaaatcgaa 150  Q
    ||||||||||| ||||||||||||||||||| |||||||    
T  42731190 ttttagttaccaaactgaactgaactgtttcgaatcgaa 42731228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 23777250 - 23777286
Alignment:
Q  122 cgaactgaactgaactgtttcaaatcgaactgaactg 158  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  23777250 cgaactgaattgaactgtttcgaatcgaactgaactg 23777286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 55216744 - 55216685
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaact 157  Q
    ||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||    
T  55216744 caaatgaaattgaattttagttatcgaactgaactggactgtttcgaatcgaactgaact 55216685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 36343798 - 36343736
Alignment:
Q  17 aactgtttcaaaccgaaccgaactgttccgaactgaactgaactgttattagtgatacctttg 79  Q
    |||||||||||||| ||| ||||||||||||||||||| |||||||||| | |||||||||||    
T  36343798 aactgtttcaaaccaaactgaactgttccgaactgaaccgaactgttatcattgatacctttg 36343736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 33186304 - 33186242
Alignment:
Q  17 aactgtttcaaaccgaaccgaactgttccgaactgaactgaactgttattagtgatacctttg 79  Q
    |||||||||||||||||| ||| |||||| |||| ||||||| |||||||| |||||||||||    
T  33186304 aactgtttcaaaccgaactgaattgttccaaactaaactgaattgttattattgatacctttg 33186242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 54801792 - 54801837
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactgaactgtttca 143  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||    
T  54801792 caaacgaaatcgaattttagttaccgaactgaactgaactgtttca 54801837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 29630111 - 29630072
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactgaact 137  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  29630111 caaatgaaattgaattttagttcccgaactgaactgaact 29630072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 133
Target Start/End: Complemental strand, 33186223 - 33186188
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactg 133  Q
    ||||||||||||||||||||||||||||||||||||    
T  33186223 caaatgaaattgaattttagttaccgaactgaactg 33186188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 40654233 - 40654265
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaa 130  Q
    |||||||||||||||||||||||||||||||||    
T  40654233 caaatgaaattgaattttagttaccgaactgaa 40654265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 8473242 - 8473199
Alignment:
Q  36 gaactgttccgaactgaactgaactgttattagtgatacctttg 79  Q
    ||||||||||||||||||| |||||||||||| |||||| ||||    
T  8473242 gaactgttccgaactgaaccgaactgttattattgatacttttg 8473199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 30595575 - 30595635
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 158  Q
    |||||||||||||||||||||||||||| |||||||||||||||  |||||||||| ||||    
T  30595575 caaatgaaattgaattttagttaccgaattgaactgaactgttttgaatcgaactgtactg 30595635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 26099346 - 26099408
Alignment:
Q  17 aactgtttcaaaccgaaccgaactgttccgaactgaactgaactgttattagtgatacctttg 79  Q
    |||||||||||| ||||| |||||||| | ||||||||||||||||||||| |||||| ||||    
T  26099346 aactgtttcaaatcgaactgaactgttacaaactgaactgaactgttattattgatacatttg 26099408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 30595519 - 30595567
Alignment:
Q  31 gaaccgaactgttccgaactgaactgaactgttattagtgatacctttg 79  Q
    |||| ||||| |||||||||||||||||||||||||| |||||||||||    
T  30595519 gaactgaactattccgaactgaactgaactgttattattgatacctttg 30595567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 387640 - 387701
Alignment:
Q  17 aactgtttcaaaccgaaccgaactgttccgaactgaactgaactgttattagtgatacctttg 79  Q
    ||||||||||| |||||| || |||||||||||||||| |||||||||||| | |||||||||    
T  387640 aactgtttcaa-ccgaactgagctgttccgaactgaaccgaactgttattattaatacctttg 387701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 387723 - 387780
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactgaa 160  Q
    ||||||||||||||||||||||||  ||   |||||||||||||| |||||||||||||||||    
T  387723 caaatgaaattgaattttagttac--aa---aactgaactgtttcgaatcgaactgaactgaa 387780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 18605352 - 18605394
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactgaactgtt 140  Q
    |||| ||||| |||||||||||||| |||||||||||||||||    
T  18605352 caaacgaaatagaattttagttaccaaactgaactgaactgtt 18605394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 35699673 - 35699628
Alignment:
Q  22 tttcaaaccgaaccgaactgttccgaactgaactgaactgttatta 67  Q
    |||| ||| ||||||||||||| | |||||||||||||||||||||    
T  35699673 tttcgaactgaaccgaactgttgcaaactgaactgaactgttatta 35699628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 18605273 - 18605317
Alignment:
Q  122 cgaactgaactgaactgtttcaaatcgaactgaactgaactgtta 166  Q
    |||||||||||||||||||||||| |||| | ||| |||||||||    
T  18605273 cgaactgaactgaactgtttcaaaccgaattaaaccgaactgtta 18605317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 37; Significance: 0.000000000004; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 60220 - 60264
Alignment:
Q  121 ccgaactgaactgaactgtttcaaatcgaactgaactgaactgtt 165  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||    
T  60220 ccgaactgaactgaactgtttcgaatcgaactgaactgaattgtt 60264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 60114 - 60162
Alignment:
Q  31 gaaccgaactgttccgaactgaactgaactgttattagtgatacctttg 79  Q
    |||| |||||||| | ||||||||||||||||||||| |||||||||||    
T  60114 gaactgaactgtttcaaactgaactgaactgttattattgatacctttg 60162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 60207 - 60239
Alignment:
Q  31 gaaccgaactgttccgaactgaactgaactgtt 63  Q
    |||| ||||||||||||||||||||||||||||    
T  60207 gaactgaactgttccgaactgaactgaactgtt 60239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 8812528 - 8812583
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactgaactgtttcaaatcgaactgaactg 158  Q
    |||||||||||||||||||||||||     ||||||||||||||||||| |||||||||||    
T  8812528 caaatgaaattgaattttagttacc-----gaactgaactgtttcaaattgaactgaactg 8812583  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 47756420 - 47756374
Alignment:
Q  21 gtttcaaaccgaaccgaactgttccgaactgaactgaactgttatta 67  Q
    ||||||||  ||||||||||||||||||| |||||||||||||||||    
T  47756420 gtttcaaattgaaccgaactgttccgaaccgaactgaactgttatta 47756374  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 47930895 - 47930937
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactgaactgtt 140  Q
    |||| ||||||||||||||||||||||||||||||| ||||||    
T  47930895 caaacgaaattgaattttagttaccgaactgaactggactgtt 47930937  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 5993732 - 5993775
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactgaactgttt 141  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||    
T  5993732 caaacgaaatcgaattatagttaccgaactgaactgaactgttt 5993775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 133
Target Start/End: Original strand, 32567239 - 32567274
Alignment:
Q  98 caaatgaaattgaattttagttaccgaactgaactg 133  Q
    |||||||||||||||||||||||||||| |||||||    
T  32567239 caaatgaaattgaattttagttaccgaattgaactg 32567274  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 45376462 - 45376505
Alignment:
Q  17 aactgtttcaaaccgaaccgaactgttccgaactgaactgaact 60  Q
    |||||||||||||||||| |||||||||||||  ||||||||||    
T  45376462 aactgtttcaaaccgaactgaactgttccgaatcgaactgaact 45376505  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 45376452 - 45376486
Alignment:
Q  124 aactgaactgaactgtttcaaatcgaactgaactg 158  Q
    |||||||||||||||||||||| ||||||||||||    
T  45376452 aactgaactgaactgtttcaaaccgaactgaactg 45376486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 45376512 - 45376545
Alignment:
Q  46 gaactgaactgaactgttattagtgatacctttg 79  Q
    |||||||||||||||||||||| |||||||||||    
T  45376512 gaactgaactgaactgttattattgatacctttg 45376545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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