View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16974_low_8 (Length: 590)
Name: NF16974_low_8
Description: NF16974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16974_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 501; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Original strand, 32063343 - 32063923
Alignment:
| Q |
1 |
tgaagtgccatctgccttggtggcatgatgagtcgcaaacctgagtttatatgttgaaattttggtcatttgccataaactgtcattcatttgtcaacgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32063343 |
tgaagtgccatctgccttggtggcattatgagtcgcacacctgagtttatatgttgaaattttggtcatttgccataaactctcattcatttgtcaacgt |
32063442 |
T |
|
| Q |
101 |
tgttccctgtattttgtgaagnnnnnnncattgttgcccatattataatcactgcatattttcagatactttctcttctgcaaagtttactcgacatttt |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32063443 |
tgttccctgtattttgtgaagaaaaaaacattgttgcccatattataatcactgcatattttcagatactttctcttctgcaaagtttagtcgacatttt |
32063542 |
T |
|
| Q |
201 |
cggatgctatgggatttcacaaacgtttgtatataactaatgctcactgcaactacctactaagcttttggctgcttattgaagatcagtttcttatgt- |
299 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32063543 |
cggatgctatgggatttcactaacgtttgtatataactaatgctcactgcaactacctactaagct-------gcttattgaagatcagtttcttatgtt |
32063635 |
T |
|
| Q |
300 |
attatagtgaaaatatatctaggacatgatttctaagttttttagttacgatgtcctaattgagctgttcaagttggaatcgtgttattttgttgttcat |
399 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32063636 |
attatagtgaaaatatatctaggacaggatttctaagttttttagttgcgatgtcctaattgagctgttcaagttggaatcgtgttattttgttgttcat |
32063735 |
T |
|
| Q |
400 |
gttaacgagaaaataaggaagaagtaaatttattaatgcatctcatttaaatcatgtaacaagaaatcatacaaatcttgtctgatcattttacattttg |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32063736 |
gttaacgagaaaataaggaagaagtaaatttattaatgcatctcatttaaatcatgtaacaagaaatcatacaaatcttgtctgatcattttacattttg |
32063835 |
T |
|
| Q |
500 |
gatatgaatggattagacagacactggaactttcaaggcctctaatatcttatcatctagctcaaatttgattggcttcttctctctc |
587 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32063836 |
gatatgaatggattagacagacactggaactttcaaggcctctaatatcttatcatctagctcaaatttgattggcttcttgtctctc |
32063923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 383 - 568
Target Start/End: Original strand, 51280035 - 51280223
Alignment:
| Q |
383 |
gttattttgttgttcatgttaacgagaaaataaggaagaagtaa----atttattaatgcatctcatttaaatcatgtaacaagaaatcatacaaatctt |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||| |||||||| ||||||| |||| |||||| |
|
|
| T |
51280035 |
gttattttgttgttcatgttaacgagaaaataaggaagtagtaactttctttattaacacacctcatttaattcatgtaataagaaataatac-aatctt |
51280133 |
T |
|
| Q |
479 |
gtctgatcattttacattttggatatgaatggattagacagacactggaactttcaaggcctctaatatcttatcatctagctcaaattt |
568 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| |||||||||| |||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
51280134 |
atctgatcattttacattttggacatgaacggatcagacagacaccggaactttcaagacctctcatatcttatcatctagctcaaattt |
51280223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 51279703 - 51279904
Alignment:
| Q |
1 |
tgaagtgccatctgccttggtggcatgatgagtcgcaaacctgagtttatatgttgaaattttggtcatttgccataaactgtcattca--tttgtcaac |
98 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||| || ||||||||| |
|
|
| T |
51279703 |
tgaagtgatatctgccttggtggcacgatgagtcgcaaacccaagtttatatgttgaaattttggtcatctgtcataaactgtcatccacctttgtcaac |
51279802 |
T |
|
| Q |
99 |
gttgttccctgtattttgtgaagnnnnnnncattgttgcccatattataatcactgcatattttcagatactttctcttctgcaaagtttactcgacatt |
198 |
Q |
| |
|
|| |||||| ||| |||||||| ||| ||||||||||||||||||| ||||| ||||||| |||| |||||||||||||||| | || ||| |
|
|
| T |
51279803 |
attattccctatatcttgtgaagaaaaaaacatcgttgcccatattataatcattgcatcttttcaggcactt--tcttctgcaaagtttatttgatatt |
51279900 |
T |
|
| Q |
199 |
ttcg |
202 |
Q |
| |
|
|||| |
|
|
| T |
51279901 |
ttcg |
51279904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University