View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16975_high_1 (Length: 739)

Name: NF16975_high_1
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16975_high_1
NF16975_high_1
[»] chr4 (3 HSPs)
chr4 (1-721)||(2898736-2899456)
chr4 (436-667)||(2885392-2885625)
chr4 (1-224)||(2885075-2885298)
[»] chr2 (6 HSPs)
chr2 (9-196)||(44224641-44224828)
chr2 (9-133)||(44212538-44212662)
chr2 (9-196)||(44235451-44235638)
chr2 (551-642)||(44235164-44235255)
chr2 (551-642)||(44212183-44212274)
chr2 (551-642)||(44224349-44224440)
[»] chr7 (2 HSPs)
chr7 (4-181)||(39576462-39576639)
chr7 (96-196)||(39549512-39549612)
[»] chr3 (1 HSPs)
chr3 (59-164)||(49771134-49771239)


Alignment Details
Target: chr4 (Bit Score: 661; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 1 - 721
Target Start/End: Complemental strand, 2899456 - 2898736
Alignment:
Q  1 ttatgcttatgtttaatggattggctgaactttcaatgaccattgcaaagcttcctagtttctacaagcaaagagaccttctattttatccttcttgggc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||| |||||    
T  2899456 ttatgcttatgtttaatggattggctgaactttcaatgaccattgcgaagcttcctagtttctacaagcaaagagaccttctgttttttccttcatgggc 2899357  T
Q  101 atattctatacctgcatggatcctcaagattcctattacatttctggaagttgctgtttgggttttcctcacctattatgtaataggattcgatccggat 200  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2899356 atatgctatacctacatggatcctcaagattcctattacatttctggaagttgctgtttgggttttcctcacctattatgtaataggattcgatccgaat 2899257  T
Q  201 gttacgaggtaaagaaccttccttatctatttacagcatgtctaaactactcgttctagattttaatgctcattggatcgcaattcttgatattttggag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2899256 gttacgaggtaaagaaccttccttatctatttacagcatgtctaaactactcgttctagattttaatgctcattggatcgcaattcttgatattttggag 2899157  T
Q  301 aatcacaatgaaatgcagtttacctggctacaaaactcagtaatgttgaggtcatagaaacgttaaaaaccacgactttgaagcctagatcatggtcacg 400  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |    
T  2899156 aatcacaatgaaatgcggtttacctggctacaaaactcagtaatgttgaggtcgtagaaacgttaaaaaccacgactttgaagcctagatcatggtcgtg 2899057  T
Q  401 gatcttattttaaaacctcttgtcccccttgaagatagtgttactaatgatgtgaggttttgttacttatgcagattactaaagcagtatcttctgctat 500  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2899056 gatcttattttaaaacctattgtcccccttgaagatagtgttactaatgatgtgaggtattgttacttatgcagattactaaagcagtatcttctgctat 2898957  T
Q  501 tactgataaaccaaatggcttctggactatttcgagctattgctgcactcggtagaaacatgattgtggccaacacatttggatcctttgcacttctcgc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2898956 tactgataaaccaaatggcttctggactatttcgagctattgcagcacttggtagaaacatgattgtggccaacacatttggatcctttgcacttctcgc 2898857  T
Q  601 acttcttacattaggtggcttcattatgtccagaagtgagttcaaaacagaagttacaagcttgttttcttttagagtttaattctaatacactgtgatg 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2898856 acttcttacattaggtggcttcattatgtccagaagtgagttcaaaacagaagttacaagcttgttttcttttagagtttaattctaatacactgtgatg 2898757  T
Q  701 taaacaaaattacactatcag 721  Q
    |||||||||||||||||||||    
T  2898756 taaacaaaattacactatcag 2898736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 436 - 667
Target Start/End: Original strand, 2885392 - 2885625
Alignment:
Q  436 tagtgttactaatgatgtgaggttttgttacttatgcagattactaaagcagtatcttctgctattactgataaaccaaatggcttctggactatttcga 535  Q
    |||||||| | ||| |||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2885392 tagtgttatttatggtgtgaggtattgttatttatgcaggttactaaagcagtatcttctgctattactgataaaccaaatggcttctggactatttcga 2885491  T
Q  536 gctattgctgcactcggtagaaacatgattgtggccaacacatttggatcctttgcacttctcgcacttcttacattaggtggcttcattatgtccagaa 635  Q
    |||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2885492 gctattgcagcacttggtagaaacatgattgtggccaatacatttgggtcctttgcacttctcgcacttcttacattaggtggcttcgttatgtccagaa 2885591  T
Q  636 gtgagttcaa--aacagaagttacaagcttgttt 667  Q
    ||||||||||  ||| ||| ||||||||||||||    
T  2885592 gtgagttcaaataaccgaaattacaagcttgttt 2885625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 2885075 - 2885298
Alignment:
Q  1 ttatgcttatgtttaatggattggctgaactttcaatgaccattgcaaagcttcctagtttctacaagcaaagagaccttctattttatccttcttgggc 100  Q
    ||||| |||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||| |||||    
T  2885075 ttatgattatgtttaatggaatggccgaactttcaatgaccattgctaagcttcctagtttctacaagcaaagagaccttctgttttttccttcatgggc 2885174  T
Q  101 atattctatacctgcatggatcctcaagattcctattacatttctggaagttgctgtttgggttttcctcacctattatgtaataggattcgatccggat 200  Q
    |||| |||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||  ||    
T  2885175 atatgctatacctacatggatcctcaagattcctattacctttctggaagttgctgcttgggtttttctcacctattacgtaataggattcgatccaaat 2885274  T
Q  201 gttacgaggtaaagaaccttcctt 224  Q
    ||||||||||||||||||||||||    
T  2885275 gttacgaggtaaagaaccttcctt 2885298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 44224828 - 44224641
Alignment:
Q  9 atgtttaatggattggctgaactttcaatgaccattgcaaagcttcctagtttctacaagcaaagagaccttctattttatccttcttgggcatattcta 108  Q
    |||||||||||| || ||||  |||| ||||||||||| |||||||||  || |||||||||| ||||||||||||||||||| || ||||||||| |||    
T  44224828 atgtttaatggaatgtctgagatttctatgaccattgctaagcttcctgtttactacaagcaacgagaccttctattttatccctcatgggcatatgcta 44224729  T
Q  109 tacctgcatggatcctcaagattcctattacatttctggaagttgctgtttgggttttcctcacctattatgtaataggattcgatcc 196  Q
    | ||| | ||||| |||||||||||  || ||||  |||||||| || ||||||| || || ||||| ||||| || ||||| |||||    
T  44224728 ttccttcgtggattctcaagattcccgtttcattaatggaagtttctctttgggtgtttcttacctactatgttattggatttgatcc 44224641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 44212662 - 44212538
Alignment:
Q  9 atgtttaatggattggctgaactttcaatgaccattgcaaagcttcctagtttctacaagcaaagagaccttctattttatccttcttgggcatattcta 108  Q
    |||||||||||| || ||||  |||| ||||||||||| |||||||||  || |||||||||| ||||||||||||||||||| || ||||||||| |||    
T  44212662 atgtttaatggaatgtctgagatttctatgaccattgctaagcttcctgtttactacaagcaacgagaccttctattttatccctcatgggcatatgcta 44212563  T
Q  109 tacctgcatggatcctcaagattcc 133  Q
    | ||| ||||||| |||||||||||    
T  44212562 ttccttcatggattctcaagattcc 44212538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 44235638 - 44235451
Alignment:
Q  9 atgtttaatggattggctgaactttcaatgaccattgcaaagcttcctagtttctacaagcaaagagaccttctattttatccttcttgggcatattcta 108  Q
    |||||||||||| || ||||  |||| ||||||||||| |||||||||  || |||||||||| ||||||||||||||||||| || ||||||||| |||    
T  44235638 atgtttaatggaatgtctgagatttctatgaccattgctaagcttcctgtttactacaagcaacgagaccttctattttatccctcatgggcatatgcta 44235539  T
Q  109 tacctgcatggatcctcaagattcctattacatttctggaagttgctgtttgggttttcctcacctattatgtaataggattcgatcc 196  Q
    | ||| | ||||| ||||||||||| ||  ||||  |||||||| || | ||||| || || ||||| ||||| || ||||| |||||    
T  44235538 ttccttcgtggattctcaagattcccatctcattagtggaagtttctctatgggtgtttcttacctactatgttattggatttgatcc 44235451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 551 - 642
Target Start/End: Complemental strand, 44235255 - 44235164
Alignment:
Q  551 ggtagaaacatgattgtggccaacacatttggatcctttgcacttctcgcacttcttacattaggtggcttcattatgtccagaagtgagtt 642  Q
    ||||||||||||||||| ||||| |||||||| ||||||||| ||||| |||||||| |||| |||||||||||| | || |||||| ||||    
T  44235255 ggtagaaacatgattgttgccaatacatttgggtcctttgcagttctcacacttcttgcattgggtggcttcattctctcaagaagtaagtt 44235164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 551 - 642
Target Start/End: Complemental strand, 44212274 - 44212183
Alignment:
Q  551 ggtagaaacatgattgtggccaacacatttggatcctttgcacttctcgcacttcttacattaggtggcttcattatgtccagaagtgagtt 642  Q
    ||||||||||||||||| ||||| |||||||| ||||||||| ||||| ||||| || |||| |||||||||||| | || |||||| ||||    
T  44212274 ggtagaaacatgattgttgccaatacatttgggtcctttgcagttctcacactttttgcattgggtggcttcattctctcaagaagtaagtt 44212183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 551 - 642
Target Start/End: Complemental strand, 44224440 - 44224349
Alignment:
Q  551 ggtagaaacatgattgtggccaacacatttggatcctttgcacttctcgcacttcttacattaggtggcttcattatgtccagaagtgagtt 642  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||||| || ||||  |||| |||||||||||| | || |||||| ||||    
T  44224440 ggtagaaacatgattgttgccaatacatttgggtcctttgcacttctcacatttctgtcattgggtggcttcattctctcaagaagtaagtt 44224349  T

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Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 39576639 - 39576462
Alignment:
Q  4 tgcttatgtttaatggattggctgaactttcaatgaccattgcaaagcttcctagtttctacaagcaaagagaccttctattttatccttcttgggcata 103  Q
    ||||||||||||||||||| |||||||||||||||||| |||  | ||||||    || |||||||||||||||||||| || || ||||||||||||||    
T  39576639 tgcttatgtttaatggatttgctgaactttcaatgaccgttgtgaggcttcccgtgttttacaagcaaagagaccttctcttctacccttcttgggcata 39576540  T
Q  104 ttctatacctgcatggatcctcaagattcctattacatttctggaagttgctgtttgggttttcctcacctattatgt 181  Q
    |  | | ||| |||||||||| || || ||| | || |||   ||||  |||||||||   |||||||||||||||||    
T  39576539 tggtcttccttcatggatccttaaaatccctgtaacgtttgctgaagcagctgtttggacattcctcacctattatgt 39576462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 39549612 - 39549512
Alignment:
Q  96 tgggcatattctatacctgcatggatcctcaagattcctattacatttctggaagttgctgtttgggttttcctcacctattatgtaataggattcgatc 195  Q
    ||||||||| || | |||||||||||||| || || ||  | || ||| ||||||||||||||||||| ||||| ||||| ||||| || || |||||||    
T  39549612 tgggcatatgctcttcctgcatggatcctaaaaatccccttaacttttgtggaagttgctgtttgggtattccttacctactatgtcattggtttcgatc 39549513  T
Q  196 c 196  Q
    |    
T  39549512 c 39549512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 164
Target Start/End: Original strand, 49771134 - 49771239
Alignment:
Q  59 tttctacaagcaaagagaccttctattttatccttcttgggcatattctatacctgcatggatcctcaagattcctattacatttctggaagttgctgtt 158  Q
    |||||| |||||||| ||||||||  |||  ||| |||||||||||||| | ||| | |||||||| ||||||||||| || ||| | ||||||| | ||    
T  49771134 tttctataagcaaagggaccttctgcttttccctgcttgggcatattctttgcctacttggatccttaagattcctataacctttgtagaagttggtatt 49771233  T
Q  159 tgggtt 164  Q
    ||||||    
T  49771234 tgggtt 49771239  T

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