View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16975_high_10 (Length: 454)

Name: NF16975_high_10
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16975_high_10
NF16975_high_10
[»] chr8 (3 HSPs)
chr8 (8-444)||(8268667-8269091)
chr8 (240-351)||(36831376-36831487)
chr8 (8-93)||(14090516-14090601)
[»] scaffold0964 (2 HSPs)
scaffold0964 (186-443)||(3085-3335)
scaffold0964 (59-103)||(3014-3058)
[»] chr4 (8 HSPs)
chr4 (187-444)||(901111-901375)
chr4 (8-164)||(901419-901575)
chr4 (186-276)||(42459437-42459527)
chr4 (11-124)||(42459262-42459375)
chr4 (273-336)||(4645329-4645392)
chr4 (285-336)||(33319732-33319783)
chr4 (309-381)||(23148796-23148868)
chr4 (380-438)||(42459555-42459610)
[»] chr5 (5 HSPs)
chr5 (19-164)||(43453289-43453434)
chr5 (8-160)||(17221865-17222010)
chr5 (187-444)||(17222058-17222320)
chr5 (186-237)||(43453456-43453507)
chr5 (44-93)||(32421085-32421134)
[»] chr7 (3 HSPs)
chr7 (257-444)||(13121388-13121575)
chr7 (187-444)||(28243931-28244195)
chr7 (19-164)||(28244239-28244383)
[»] chr6 (6 HSPs)
chr6 (186-384)||(12384841-12385039)
chr6 (260-374)||(25062821-25062935)
chr6 (250-373)||(13681591-13681714)
chr6 (8-156)||(25062587-25062731)
chr6 (391-444)||(13310761-13310814)
chr6 (188-228)||(25062783-25062823)
[»] chr3 (2 HSPs)
chr3 (24-164)||(27993341-27993481)
chr3 (208-371)||(27993547-27993710)
[»] chr2 (2 HSPs)
chr2 (273-336)||(32467582-32467645)
chr2 (275-334)||(28528094-28528153)


Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 444
Target Start/End: Complemental strand, 8269091 - 8268667
Alignment:
Q  8 gtcaatccggctgtagctggtatccttaagccaagaaagaccggtggcactcagtccgtcacgccaccactgtgcgttcatgataggcctggtatcctcg 107  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  8269091 gtcaatccggttgtagctggtatccttaagccaagaaagaccggtggcactcagtccatcacgccaccactgtgcattcatgataggcctggtatcctcg 8268992  T
Q  108 tcatgcatcgaatcaatcttcataccattgttaatgcattttaaattggctcgccacaacnnnnnnnnnnnnnnnnnncattaacattagtttcacaaag 207  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||                   ||||||||||||||||||||||    
T  8268991 tcatgcatcgaatcaatcttcttcccattgttaatgcattttaaattggctcgccacaa---aaaattaaaaacaaaacattaacattagtttcacaaag 8268895  T
Q  208 attaacaacagtttacaatcattaaagttttgcattaatatgtacctcgccctcagatgccttcatggccacatgctcatggtacctcgtcagcagagta 307  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |  ||||||||||||||||| |||||||||||||||| || |||    
T  8268894 attaacaacagtttacaatcattaaagtttcacattaatatgtacctcgccctcaaacaccttcatggccacatgcacatggtacctcgtcagtagggta 8268795  T
Q  308 atgtcgtgtgggccacccggatagtcatccaaaggctcaaggtctggcgtcggcacacgcttccccctccgccgctgctactactggccatcatccacat 407  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||            
T  8268794 atgtcgtgtaggccacctggatagtcatccaaaggctcaaggtctggcgccggcacacgcttccccctccgccgccgctgctactggccatc-------- 8268703  T
Q  408 catcctccattgcctcagcatcatcctccacctgatg 444  Q
     ||||||||||||||||||||||||||||||||||||    
T  8268702 -atcctccattgcctcagcatcatcctccacctgatg 8268667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 351
Target Start/End: Complemental strand, 36831487 - 36831376
Alignment:
Q  240 cattaatatgtacctcgccctcagatgccttcatggccacatgctcatggtacctcgtcagcagagtaatgtcgtgtgggccacccggatagtcatccaa 339  Q
    ||||||||  ||||||||| ||||  |||||| ||||||| ||| |||||||| ||  ||||||  || | |||||||||||||| ||||| |||||||     
T  36831487 cattaataaatacctcgccatcagtcgccttcctggccacgtgcacatggtacttccacagcaggctagtctcgtgtgggccacctggataatcatccag 36831388  T
Q  340 aggctcaaggtc 351  Q
     |||||| ||||    
T  36831387 tggctcagggtc 36831376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 14090516 - 14090601
Alignment:
Q  8 gtcaatccggctgtagctggtatccttaagccaagaaagaccggtggcact-cagtccgtcacgccaccactgtgcgttcatgatag 93  Q
    ||||||| || ||||||||||||| | ||||||||||||||||||| | || || || ||||||||||||| |||| | ||||||||    
T  14090516 gtcaatcaggttgtagctggtatcatgaagccaagaaagaccggtg-cgctgcattctgtcacgccaccaccgtgcatccatgatag 14090601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0964 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: scaffold0964
Description:

Target: scaffold0964; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 186 - 443
Target Start/End: Original strand, 3085 - 3335
Alignment:
Q  186 cattaacattagtttcacaaagattaacaacagtttacaatcattaaagttttgcattaatatgtacctcgccctcagatgccttcatggccacatgctc 285  Q
    ||||||||| |||||| |||||||||| ||||||||||||||||||||||||  |||||||| ||||||| |||||||| |||||| |||| |||||  |    
T  3085 cattaacatcagtttctcaaagattaaaaacagtttacaatcattaaagtttcacattaataagtacctctccctcagacgccttcctggctacatggac 3184  T
Q  286 atggtacctcgtcagcagagtaatgtcgtgtgggccacccggatagtcatccaaaggctcaaggtctggcgtcggcacacgcttccccctccgccgctgc 385  Q
    |||||||||||| ||||| ||| |||||||||||||||| |||||   ||||| ||||||| ||||||||  ||||| ||  ||||||||||  |         
T  3185 atggtacctcgttagcagggtagtgtcgtgtgggccacctggataactatccagaggctcatggtctggcaccggca-acatttccccctccatc----- 3278  T
Q  386 tactactggccatcatccacatcatcctccattgcctcagcatcatcctccacctgat 443  Q
     ||| |||||||| ||||||||| | ||||||||||||| ||||||||||||||||||    
T  3279 -actgctggccatgatccacatccttctccattgcctcaacatcatcctccacctgat 3335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0964; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 3014 - 3058
Alignment:
Q  59 cagtccgtcacgccaccactgtgcgttcatgataggcctggtatc 103  Q
    |||||| |||||||||||| |||||||||||||| ||||||||||    
T  3014 cagtccatcacgccaccaccgtgcgttcatgatatgcctggtatc 3058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 187 - 444
Target Start/End: Complemental strand, 901375 - 901111
Alignment:
Q  187 attaacattagtttcacaaagattaacaacagtttacaatcatt----aaagttttgcattaatatgtacctcgccctcagatgccttcatggccacatg 282  Q
    |||||||| ||||||| ||||||||| |||| ||||||||||||    ||||| |  |||||||| ||||| | |||||||| |||||| ||||||| ||    
T  901375 attaacatcagtttcaaaaagattaataacaatttacaatcattcattaaagtatcacattaatacgtaccactccctcagacgccttcttggccacgtg 901276  T
Q  283 ctcatggtacctcgtcagcagagtaatgtcgtgtgggccacccggatagtcatccaaaggctcaaggtctggcgtcggcacacgcttccccctccg---c 379  Q
      || |||| ||| ||||||| ||| | |||||||||||||| ||||||||||| | ||||||| ||||||||  |  ||||||||||||| ||||   |    
T  901275 tacaaggtatctcatcagcagggtagtatcgtgtgggccaccaggatagtcatcaagaggctcagggtctggctccaccacacgcttccccatccgtcac 901176  T
Q  380 cgctgctactactggccatcatccacatcatcctccattgcctcagcatcatcctccacctgatg 444  Q
    ||| ||| || ||||||||||||||| || ||||||| ||||||  |||||||||||||||||||    
T  901175 cgccgctgctgctggccatcatccacgtcctcctccactgcctctacatcatcctccacctgatg 901111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 901575 - 901419
Alignment:
Q  8 gtcaatccggctgtagctggtatccttaagccaagaaagaccggtggcactcagtccgtcacgccaccactgtgcgttcatgataggcctggtatcctcg 107  Q
    |||||||  |||| ||||||||| || ||||||||||||||| |||||||||| ||  |||||||||||| ||| ||||||||||||| || |||  ||     
T  901575 gtcaatcttgctgaagctggtattctaaagccaagaaagaccagtggcactcaatcgatcacgccaccaccgtgtgttcatgataggcatgatattgtca 901476  T
Q  108 tcatgcatcgaatcaatcttcataccattgttaatgcattttaaattggctcgccac 164  Q
    | |||||||  || ||||||| | |||||||| |||||||||| |||||||||||||    
T  901475 ttatgcatcatataaatcttcttcccattgttgatgcattttatattggctcgccac 901419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 186 - 276
Target Start/End: Original strand, 42459437 - 42459527
Alignment:
Q  186 cattaacattagtttcacaaagattaacaacagtttacaatcattaaagttttgcattaatatgtacctcgccctcagatgccttcatggc 276  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||| |  |||||||| | |||||||| ||||  |||||||||||    
T  42459437 cattaacatgagtttcacaaagattaacagcagtttacaatcattaaagtatcacattaataggcacctcgccatcagcagccttcatggc 42459527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 42459262 - 42459375
Alignment:
Q  11 aatccggctgtagctggtatccttaagccaagaaagaccggtggcactcagtccgtcacgccaccactgtgcgttcatgataggcctggtatcctcgtca 110  Q
    |||| |||||||| | ||||||| ||| ||||||| |||||||||||||||||  ||||||||||||  |||   |||||||||  ||||||| || | |    
T  42459262 aatctggctgtagtttgtatcctgaagtcaagaaataccggtggcactcagtctatcacgccaccaccatgcagccatgataggtttggtatcatcataa 42459361  T
Q  111 tgcatcgaatcaat 124  Q
    |||||| |||||||    
T  42459362 tgcatcaaatcaat 42459375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 336
Target Start/End: Original strand, 4645329 - 4645392
Alignment:
Q  273 tggccacatgctcatggtacctcgtcagcagagtaatgtcgtgtgggccacccggatagtcatc 336  Q
    ||||||||||  |||| ||||||||||||| |||| |||||||||||||| | |||||||||||    
T  4645329 tggccacatgaacatgatacctcgtcagcaaagtagtgtcgtgtgggccatcgggatagtcatc 4645392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 336
Target Start/End: Original strand, 33319732 - 33319783
Alignment:
Q  285 catggtacctcgtcagcagagtaatgtcgtgtgggccacccggatagtcatc 336  Q
    |||||||| ||||||||| ||| | ||||||||||||||| |||||||||||    
T  33319732 catggtacttcgtcagcatagtcaagtcgtgtgggccaccaggatagtcatc 33319783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 381
Target Start/End: Original strand, 23148796 - 23148868
Alignment:
Q  309 tgtcgtgtgggccacccggatagtcatccaaaggctcaaggtctggcgtcggcacacgcttccccctccgccg 381  Q
    |||||||||||||||| ||||||||||| | || || | ||| ||||  |||| |||||||| ||||||||||    
T  23148796 tgtcgtgtgggccaccgggatagtcatcaagagacttagggtatggctccggcgcacgcttcaccctccgccg 23148868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 438
Target Start/End: Original strand, 42459555 - 42459610
Alignment:
Q  380 cgctgctactactggccatcatccacatcatcctccattgcctcagcatcatcctccac 438  Q
    |||||||||| |||| ||||||||||||| |||||    ||||||||||||||||||||    
T  42459555 cgctgctactgctggtcatcatccacatcctcctc---agcctcagcatcatcctccac 42459610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 43453289 - 43453434
Alignment:
Q  19 tgtagctggtatccttaagccaagaaagaccggtggcactcagtccgtcacgccaccactgtgcgttcatgataggcctggtatcctcgtcatgcatcga 118  Q
    ||||||| ||||| | |||||||||||| ||||||||||||||||| ||| ||||||| ||||||||||||||||| ||| |||| || ||||||||| |    
T  43453289 tgtagcttgtatcatgaagccaagaaaggccggtggcactcagtccatcatgccaccattgtgcgttcatgataggtctgatatcgtcatcatgcatcaa 43453388  T
Q  119 atcaatcttcataccattgttaatgcattttaaattggctcgccac 164  Q
     ||||||||| | || ||||| ||||||||||||||||||||||||    
T  43453389 gtcaatcttcttcccgttgttgatgcattttaaattggctcgccac 43453434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 160
Target Start/End: Original strand, 17221865 - 17222010
Alignment:
Q  8 gtcaatccggctgtagctggtatccttaagccaagaaagaccggtggcactcagtccgtcacgccaccactgtgcgttcatgataggcctggtatcctcg 107  Q
    ||||||| |||||||||||||||||| |||       |||| |||| |||||| ||  |||||||||||||||||||||||||||||| | ||||| ||     
T  17221865 gtcaatctggctgtagctggtatcctgaag-------agactggtgacactcaatcgatcacgccaccactgtgcgttcatgataggcttcgtatcgtca 17221957  T
Q  108 tcatgcatcgaatcaatcttcataccattgttaatgcattttaaattggctcg 160  Q
    |||||||||| |||||||||| | || ||||| ||||||||||||||||||||    
T  17221958 tcatgcatcgtatcaatcttcttcccgttgttgatgcattttaaattggctcg 17222010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 187 - 444
Target Start/End: Original strand, 17222058 - 17222320
Alignment:
Q  187 attaacattagtttcacaaagattaacaacagtttacaatcatt----aaagttttgcattaatatgtacctcgccctcagatgccttcatggccacatg 282  Q
    |||||||| ||||||| |||||||||||||||||| ||||||||    ||||| |  |||||||||||||| | ||| ||||||||||| ||||||| ||    
T  17222058 attaacatcagtttcaaaaagattaacaacagtttgcaatcattcattaaagtatcacattaatatgtaccactccc-cagatgccttcctggccacgtg 17222156  T
Q  283 ctcatggtacctcgtcagcagagtaatgtcgtgtgggccacccggatagtcatccaaaggctcaaggtctggcgtcggcacacgctt---ccccctccgc 379  Q
    | ||||||||   |||||||||||| ||||||||||||||   ||||||||||| | ||||| |  ||||| |  |  |||||  ||   ||||||| ||    
T  17222157 cacatggtac---gtcagcagagtagtgtcgtgtgggccattgggatagtcatcaagaggcttagagtctgcctccaccacacattttccccccctctgc 17222253  T
Q  380 cgctgctactactggccatcatccacatcatcc--tccattgcctcagcatcatcctccacctgatg 444  Q
    ||  ||| ||  ||||||||||||||||| |||  |||||||||||| ||||||| |||||||||||    
T  17222254 cgtcgctgctgttggccatcatccacatcctccaatccattgcctcaacatcatcatccacctgatg 17222320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 43453456 - 43453507
Alignment:
Q  186 cattaacattagtttcacaaagattaacaacagtttacaatcattaaagttt 237  Q
    ||||||||| ||||||||||||||||||||| |||||| |||||||||||||    
T  43453456 cattaacatcagtttcacaaagattaacaacggtttacgatcattaaagttt 43453507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 32421134 - 32421085
Alignment:
Q  44 aagaccggtggcactcagtccgtcacgccaccactgtgcgttcatgatag 93  Q
    ||||| |||||| |||||||| |||||||||||||||||  |||||||||    
T  32421134 aagactggtggctctcagtccatcacgccaccactgtgctgtcatgatag 32421085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 257 - 444
Target Start/End: Complemental strand, 13121575 - 13121388
Alignment:
Q  257 ccctcagatgccttcatggccacatgctcatggtacctcgtcagcagagtaatgtcgtgtgggccacccggatagtcatccaaaggctcaaggtctggcg 356  Q
    ||||||||  |||||||||  || ||| |||||||||||||||||| |||| ||||||||||| |||  ||||||||||| | ||||||| |||| |||     
T  13121575 ccctcagacaccttcatggatacgtgcacatggtacctcgtcagcatagtagtgtcgtgtggggcacttggatagtcatcaagaggctcagggtccggct 13121476  T
Q  357 tcggcacacgcttccccctccgccgctgctactactggccatcatccacatcatcctccattgcctcagcatcatcctccacctgatg 444  Q
     |  |||| ||||||||||||||||||||| ||  ||| || ||| |||||| |||| |||||||||| |||||||||||||||||||    
T  13121475 ccaccacatgcttccccctccgccgctgctgctgttggacaacattcacatcctccttcattgcctcaacatcatcctccacctgatg 13121388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 187 - 444
Target Start/End: Complemental strand, 28244195 - 28243931
Alignment:
Q  187 attaacattagtttcacaaagattaacaacagtttacaatcatt----aaagttttgcattaatatgtacctcgccctcagatgccttcatggccacatg 282  Q
    |||||||| ||||||  |||||||||||||||||||||||||||    ||||| |   ||||| || | || | || ||||| ||||||  || ||| ||    
T  28244195 attaacatcagtttctaaaagattaacaacagtttacaatcattcattaaagtatcaaattaacattttccactccttcagacgccttcccgggcacgtg 28244096  T
Q  283 ctcatggtacctcgtcagcagagtaatgtcgtgtgggccacccggatagtcatccaaaggctcaaggtctggcgtcggcacacgcttccccctccgccgc 382  Q
    | |||||| |||||||||||| ||| |||||||||||||||  ||||||||||| | ||||||| ||| || |  |  ||||| |||||||||||||| |    
T  28244095 cacatggtgcctcgtcagcagggtagtgtcgtgtgggccactgggatagtcatcaagaggctcagggtgtgactccaccacacccttccccctccgcctc 28243996  T
Q  383 tgctactactg---gccatcatccacatcatcctccattgcctcagcatcatcctccacctgatg 444  Q
     || ||| |||   ||||||||||||||| ||||||||| ||| |||||||||||||||||||||    
T  28243995 cgccactgctgctggccatcatccacatcctcctccatttccttagcatcatcctccacctgatg 28243931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 28244383 - 28244239
Alignment:
Q  19 tgtagctggtatccttaagccaagaaagaccggtggcactcagtccgtcacgccaccactgtgcgttcatgataggcctggtatcctcgtcatgcatcga 118  Q
    ||||||| ||||| | |||| ||||||||||||||||||||||||  |||||||||||| ||| |||||||||||||| |||| | || ||||||||||     
T  28244383 tgtagcttgtatcatgaagctaagaaagaccggtggcactcagtcgatcacgccaccac-gtgtgttcatgataggcccggtagcgtcatcatgcatcgt 28244285  T
Q  119 atcaatcttcataccattgttaatgcattttaaattggctcgccac 164  Q
    |||||||||| |  |||| || ||||||||||||||||||| ||||    
T  28244284 atcaatcttcttctcattattgatgcattttaaattggctcaccac 28244239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 186 - 384
Target Start/End: Complemental strand, 12385039 - 12384841
Alignment:
Q  186 cattaacattagtttcacaaagattaacaacagtttacaatcattaaagttttgcattaatatgtacctcgccctcagatgccttcatggccacatgctc 285  Q
    |||||||||||||||||||||||||||||| |  || |||||||||||||||  |||||||| |||||||||||| | | |||||| |||| |||||  |    
T  12385039 cattaacattagtttcacaaagattaacaaaaaatttcaatcattaaagtttcacattaataagtacctcgcccttataggccttcttggctacatggac 12384940  T
Q  286 atggtacctcgtcagcagagtaatgtcgtgtgggccacccggatagtcatcca-aaggctcaaggtctggcgtcggcacacgcttccccctccgccgctg 384  Q
    |||||||||| ||||||| ||| ||| ||||||| |||  ||||||||||| | |  ||||| |||||| |  || ||||||||||||||||||| ||||    
T  12384939 atggtacctcatcagcagggtagtgttgtgtggg-cacttggatagtcatcaagattgctcagggtctgacaccgccacacgcttccccctccgctgctg 12384841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 260 - 374
Target Start/End: Original strand, 25062821 - 25062935
Alignment:
Q  260 tcagatgccttcatggccacatgctcatggtacctcgtcagcagagtaatgtcgtgtgggccacccggatagtcatccaaaggctcaaggtctggcgtcg 359  Q
    |||||||||||| ||||||||||| |||||||||||||||||   ||| |||||||||||||||| ||||||||||| | ||||| |||||||| |  |     
T  25062821 tcagatgccttcctggccacatgcacatggtacctcgtcagcttggtagtgtcgtgtgggccaccgggatagtcatcaagaggcttaaggtctgcctcca 25062920  T
Q  360 gcacacgcttccccc 374  Q
     ||||||||||||||    
T  25062921 ccacacgcttccccc 25062935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 250 - 373
Target Start/End: Complemental strand, 13681714 - 13681591
Alignment:
Q  250 tacctcgccctcagatgccttcatggccacatgctcatggtacctcgtcagcagagtaatgtcgtgtgggccacccggatagtcatccaaaggctcaagg 349  Q
    ||||||||||||||| |||||| ||||||| ||| |||||||||||  |||||| | | |||||||||||||||| ||||||||||| | ||||||| ||    
T  13681714 tacctcgccctcagacgccttcctggccacgtgcacatggtacctccacagcagggaagtgtcgtgtgggccaccaggatagtcatcaagaggctcaggg 13681615  T
Q  350 tctggcgtcggcacacgcttcccc 373  Q
    | ||||  |  |||||||||||||    
T  13681614 tatggcaccaccacacgcttcccc 13681591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 25062587 - 25062731
Alignment:
Q  8 gtcaatccggctgtagctggtatccttaagccaagaaagaccggtggcactcagtccgtcacgccaccactgtgcgttcatgataggcctggtatcctcg 107  Q
    ||||||| ||| ||||||| |||||| |||||||||||||| ||||| | ||   || |||| |||||||  ||| | |||||||||| ||||||| ||     
T  25062587 gtcaatctggcagtagctgatatcctgaagccaagaaagactggtggaa-tc---ccatcactccaccaccatgcatccatgataggcttggtatcgtca 25062682  T
Q  108 tcatgcatcgaatcaatcttcataccattgttaatgcattttaaattgg 156  Q
    |||||||||  || ||||||| | ||||| || ||||||||||||||||    
T  25062683 tcatgcatcacattaatcttcttcccatttttgatgcattttaaattgg 25062731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 444
Target Start/End: Original strand, 13310761 - 13310814
Alignment:
Q  391 ctggccatcatccacatcatcctccattgcctcagcatcatcctccacctgatg 444  Q
    |||||||||||| ||||| || |||||||||||| |||||| ||||||||||||    
T  13310761 ctggccatcatcaacatcctcatccattgcctcaacatcatactccacctgatg 13310814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 25062783 - 25062823
Alignment:
Q  188 ttaacattagtttcacaaagattaacaacagtttacaatca 228  Q
    ||||||| ||||||| |||||||||||| ||||||||||||    
T  25062783 ttaacatcagtttcaaaaagattaacaaaagtttacaatca 25062823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 27993341 - 27993481
Alignment:
Q  24 ctggtatccttaagccaagaaagaccggtggcactcagtccgtcacgccaccactgtgcgttcatgataggcctggtatcctcgtcatgcatcgaatcaa 123  Q
    ||||||| || |||||||||||||||||||||||||||||| ||||| | |||| |||| | ||| |||| | || | || || ||||| |||  |||||    
T  27993341 ctggtattctgaagccaagaaagaccggtggcactcagtccatcacgtcgccaccgtgcttccattatagtcttgttctcttcatcatgtatcacatcaa 27993440  T
Q  124 tcttcataccattgttaatgcattttaaattggctcgccac 164  Q
    ||||| | ||||| || |||||||||| |||| ||| ||||    
T  27993441 tcttcttcccatttttgatgcattttacattgcctcaccac 27993481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 371
Target Start/End: Original strand, 27993547 - 27993710
Alignment:
Q  208 attaacaacagtttacaatcattaaagttttgcattaatatgtacctcgccctcagatgccttcatggccacatgctcatggtacctcgtcagcagagta 307  Q
    |||||||||| ||||||| ||||||||| |  || ||||| ||||||| || ||||  | |  | | ||||| ||  |||||||||||||||||  ||||    
T  27993547 attaacaacattttacaaacattaaagtatcacactaataggtacctcaccatcagtcgtcgccctcgccacttgaacatggtacctcgtcagcgaagta 27993646  T
Q  308 atgtcgtgtgggccacccggatagtcatccaaaggctcaaggtctggcgtcggcacacgcttcc 371  Q
     |||||||| ||||||| ||||||||||| | |||||||   ||||||  ||||||||||||||    
T  27993647 gtgtcgtgtcggccaccaggatagtcatcaagaggctcagactctggctccggcacacgcttcc 27993710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 336
Target Start/End: Original strand, 32467582 - 32467645
Alignment:
Q  273 tggccacatgctcatggtacctcgtcagcagagtaatgtcgtgtgggccacccggatagtcatc 336  Q
    ||||||||||  |||||||||||||||||| |||| ||| |||||||||||| |||||||||||    
T  32467582 tggccacatgaacatggtacctcgtcagcacagtagtgttgtgtgggccaccaggatagtcatc 32467645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 28528094 - 28528153
Alignment:
Q  275 gccacatgctcatggtacctcgtcagcagagtaatgtcgtgtgggccacccggatagtca 334  Q
    ||||||||  |||||||||||||||||| |||||| ||||||||||||||  ||||||||    
T  28528094 gccacatgaacatggtacctcgtcagcacagtaatttcgtgtgggccaccaagatagtca 28528153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University