View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16975_high_18 (Length: 378)
Name: NF16975_high_18
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_high_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 32809066 - 32809286
Alignment:
| Q |
16 |
atgcagagatagat-tcactacctgtttaccgattccacccatgcccaaccttgcagccttgacggtcattgcacacca----tgt-gtgttctccttgt |
109 |
Q |
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| T |
32809066 |
atgcagagatagagatcactacctgtttaccgattccacccatgcccaaggttgcagcctttgcacaccttgc-ctccaacggtgttgtggtctccttgt |
32809164 |
T |
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| Q |
110 |
cgtgaggctcctccatacttgagaaaaaaggttgaagcaaaataacttgaccatgtgagtctctcacattgtggtatatatatttgtaagattggtgaga |
209 |
Q |
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| T |
32809165 |
cgtgaggctcctccatacttgagaaaa-aggttgaagcaaaataacttgaccatgtgagtctctcacattgtggtatatatatttgtaagattggtgaga |
32809263 |
T |
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| Q |
210 |
gggagataaatgatagatgaagt |
232 |
Q |
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| T |
32809264 |
gggagataaatgatagatgaagt |
32809286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 32275317 - 32275452
Alignment:
| Q |
9 |
gaataatatgcagagatagattcactacctgtttaccgattccacccatgcccaaccttgcagccttgacggtcattgcacaccatg------------- |
95 |
Q |
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| T |
32275317 |
gaataaaatgcagagatagattcactacctgtttaccgattccacccatgcccaagcttgcagccttgacggtcattgcacaccttgcctccaacggtgt |
32275416 |
T |
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| Q |
96 |
tgtgttctccttgtcgtgaggctcctccatacttga |
131 |
Q |
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| T |
32275417 |
tgggttctccttgtcgtgaggctcctccatacttga |
32275452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 153
Target Start/End: Original strand, 32269024 - 32269165
Alignment:
| Q |
24 |
atagattcactacctgtttaccgattccacccatgcccaaccttgcagccttgacggtcattgcaca-------cca----tg-tgtgttctccttgtcg |
111 |
Q |
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| T |
32269024 |
atagattcactacctgtttaccgattccacccatgcccaaggttgcaaccttgacggtcattgcacacttgcctccaacggtgttgtgttctctttgtcg |
32269123 |
T |
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| Q |
112 |
tgaggctcctccatacttgagaaaaaaggttgaagcaaaata |
153 |
Q |
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| T |
32269124 |
tgaggctcctccatacttgagaaaaaaggtttaagaaaaata |
32269165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 32269175 - 32269221
Alignment:
| Q |
186 |
tatatatttgtaagattggtgagagggagataaatgatagatgaagt |
232 |
Q |
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| T |
32269175 |
tataaatttgtaagactggtgagagggagataaatgatagatgaagt |
32269221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 378
Target Start/End: Original strand, 49412638 - 49412697
Alignment:
| Q |
319 |
gtaagtaaaagttcggggttcttaggttatgaatgaattacccttcacacaatatatcct |
378 |
Q |
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| T |
49412638 |
gtaaggaaaagttagtggttcgtagtttatgaatgtatgacccttcacacaatatatcct |
49412697 |
T |
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