View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16975_high_20 (Length: 367)
Name: NF16975_high_20
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_high_20 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0131 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 4487582 - 4487216
Alignment:
| Q |
1 |
tttgttttggtgaattagttaagctggttttgaaccattgcatgtattaaaccagtctcaacttttggttttggttgtagtcaatttatgaatcttccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4487582 |
tttgttttggtgaattagttaagctggttttgaaccattgcatgtattaaaccagtctcaacttttggttttggttgtagtcaatttatgaatcttccat |
4487483 |
T |
|
| Q |
101 |
tcaaaacttgtttttattttggtgttgtttgattacataatatgtatgttgagtattaattattgttacgtggcacaattgatctttatattgatataag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4487482 |
tcaaaacttgtttttattttggtgttgtttgattacataatatgtatgttgagtattaattattgttacgtggcacaattgatctttatattgatataag |
4487383 |
T |
|
| Q |
201 |
agtagtagtgttgaattgatctagttatgtcctcnnnnnnncactttttgctagggggtatattttttgttgagaaaacataggccgaggttatcgggtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4487382 |
agtagtagtgttgaattgatctagttatgtcctcttttttacactttttgctagggggtatattttttgttgagaaaacataggccgaggttatcgggtt |
4487283 |
T |
|
| Q |
301 |
tctgttttgtgaattagattcttgtcttatcattttttctttcgaatggaacacaaactataggact |
367 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4487282 |
tctattttgtgaattagattcttgtcttatcattttttctttcgaatggaacacaaactataggact |
4487216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 19023172 - 19022871
Alignment:
| Q |
1 |
tttgttttggtgaattagttaagctggttttgaaccattgcatgtattaaaccagtctcaacttttggttttggttgtagtcaatttatgaatcttccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
19023172 |
tttgttttggtgaattagttaagctggttttgaaccattgcatgtattaaaccagtctcaacttttggttttggttgtagtcaatttatgaatcttttat |
19023073 |
T |
|
| Q |
101 |
tcaaaacttgtttttattttggtgttgtttgattacataatatgtatgttgagtattaattattgttacgtggcacaattgatctttatattgatataag |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19023072 |
tcaaaacttgttttgattttggtgttgtttgattacataatatatatgttgagtattaattattgttacgtggcacaattgatctttatattgatataag |
19022973 |
T |
|
| Q |
201 |
agtagtagtgttgaattgatctagttatgtcctcnnnnnnncactttttgctagggggtatattttttgttgagaaaacataggccgaggttatcgggtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
19022972 |
agtagtagtgttgaattgatctagttatgtcctcttttttccactttttgctagggggtatattttttgttgagaaaacataggccgaggttatcaggtt |
19022873 |
T |
|
| Q |
301 |
tc |
302 |
Q |
| |
|
|| |
|
|
| T |
19022872 |
tc |
19022871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 22067071 - 22066770
Alignment:
| Q |
1 |
tttgttttggtgaattagttaagctggttttgaaccattgcatgtattaaaccagtctcaacttttggttttggttgtagtcaatttatgaatcttccat |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22067071 |
tttgttttggtgaattagttaagcttgttttgaaccattgcatgtattaaaccagtctcaacttttggttttggttgtagtcaatttatgaatcttccat |
22066972 |
T |
|
| Q |
101 |
tcaaaacttgtttttattttggtgttgtttgattacataatatgtatgttgagtattaattattgttacgtggcacaattgatctttatattgatataag |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22066971 |
tcaaaacttgttttgattttggtgttgtttgattacataatatatatgttgagtattaattattgttacgtggcacaattgatctttatattgatataag |
22066872 |
T |
|
| Q |
201 |
agtagtagtgttgaattgatctagttatgtcctcnnnnnnncactttttgctagggggtatattttttgttgagaaaacataggccgaggttatcgggtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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|
| T |
22066871 |
agtagtagtgttgaattgatctagttatgtcctcttttttctactttttgctagggggtatattatttgttgagaaaacataggccgaggttatcaggtt |
22066772 |
T |
|
| Q |
301 |
tc |
302 |
Q |
| |
|
|| |
|
|
| T |
22066771 |
tc |
22066770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 300 - 367
Target Start/End: Complemental strand, 22066590 - 22066523
Alignment:
| Q |
300 |
ttctgttttgtgaattagattcttgtcttatcattttttctttcgaatggaacacaaactataggact |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
22066590 |
ttctgttttgtgaattagattcttgtcttatcattttttctttcgaatggaacacaaactagaggact |
22066523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 367
Target Start/End: Complemental strand, 19022714 - 19022646
Alignment:
| Q |
300 |
ttctgttttgtgaattagattcttgtcttatcatt-ttttctttcgaatggaacacaaactataggact |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
19022714 |
ttctgttttgtgaattagattcttgtcttatcatttttttctttcgaatggaacacaaactagaggact |
19022646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 111 - 302
Target Start/End: Complemental strand, 22619889 - 22619698
Alignment:
| Q |
111 |
tttttattttggtgttgtttgattacataatatgtatgttgagtattaattattgttacgtggcacaattgatctttatattgatataagagtagtagtg |
210 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22619889 |
ttttgattttggtgttgtttgattacataatatatatgttgagtattaattattgttacgtggcacaattgatctttatattgatataagagtagtagtg |
22619790 |
T |
|
| Q |
211 |
ttgaattgatctagttatgtcctcnnnnnnncactttttgctagggggtatattttttgttgagaaaacataggccgaggttatcgggtttc |
302 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
22619789 |
ttgaattgatctagttatgtcctcttttttccactttttgccaaggggtatattttttgttgagaaaacataagtcgaggttatcgggtttc |
22619698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 22621370 - 22621256
Alignment:
| Q |
5 |
ttttggtgaattagttaagctggttttgaaccattgcatgtattaaaccagtctcaacttttggttttggttgtagtcaatttatgaatcttccattcaa |
104 |
Q |
| |
|
|||| ||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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|
| T |
22621370 |
tttttgtgtattagttaagttggttttgaaccattgcatgtattgaaccagtctcaacttttggttttggttgtagtcaatgtatgaatcttccattaaa |
22621271 |
T |
|
| Q |
105 |
aacttgtttttattt |
119 |
Q |
| |
|
|||||||||| |||| |
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|
| T |
22621270 |
aacttgttttgattt |
22621256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 300 - 367
Target Start/End: Original strand, 13514 - 13581
Alignment:
| Q |
300 |
ttctgttttgtgaattagattcttgtcttatcattttttctttcgaatggaacacaaactataggact |
367 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| |||||||||| ||||||||||||||||| |||||| |
|
|
| T |
13514 |
ttctgttttgtgaaatagattcctgtcttatctttttttcttttgaatggaacacaaactagaggact |
13581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 32091515 - 32091584
Alignment:
| Q |
148 |
gttgagtattaattattgttacgtggcacaattgatctttatattgatataagagtagtagtgttgaatt |
217 |
Q |
| |
|
|||||||||||||| | || |||||||| ||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
32091515 |
gttgagtattaattttctctatgtggcacagttgatctatatattgatataagagtagtagtgctgaatt |
32091584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 367
Target Start/End: Original strand, 32091979 - 32092045
Alignment:
| Q |
303 |
tgttttgtgaattagattcttgtcttatcattttt--tctttcgaatggaacacaaactataggact |
367 |
Q |
| |
|
||||||||||||||||||| | |||| | || ||| |||||| ||||||||||||||||||||||| |
|
|
| T |
32091979 |
tgttttgtgaattagattcctatcttttaatctttgttctttctaatggaacacaaactataggact |
32092045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 43254951 - 43254850
Alignment:
| Q |
24 |
ctggttttgaaccattgcatgtattaaaccagtctcaacttttggttttggttgtagtcaatttatga---atcttccattcaaaacttgtttttatttt |
120 |
Q |
| |
|
|||||||||| | | || |||||| |||||||||||| ||| |||||||||| ||||||| ||||| |||||| |||||||||||||||| ||||| |
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| T |
43254951 |
ctggttttgagctagtgtatgtatagaaccagtctcaaattt-ggttttggtttaagtcaatatatgatgaatcttcgattcaaaacttgttttgatttt |
43254853 |
T |
|
| Q |
121 |
ggt |
123 |
Q |
| |
|
||| |
|
|
| T |
43254852 |
ggt |
43254850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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