View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16975_high_22 (Length: 361)
Name: NF16975_high_22
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 17 - 359
Target Start/End: Original strand, 7030283 - 7030637
Alignment:
| Q |
17 |
aattctaacttcggcatgttggcctcttgacttgatatggtttaatatgtttactctcaatataatcatggctagttaagcagcgatagaagtgaaacca |
116 |
Q |
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| T |
7030283 |
aattctaacttcagcatgttggcctcttgacttgatatggtttaatatgtttactctcaatataatcatggctagttaagcagcgatagaggtgaaacca |
7030382 |
T |
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| Q |
117 |
gactcttattaagactaacataagagtgattttagttactaagagtgattttagttagtaataccagtatcaaacacacactgtgaaaattgttaaaagt |
216 |
Q |
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| T |
7030383 |
gtctcttatgtatactaacataagagtgattttagttagtaagagtgattttagttagtaatagcagtatcaaacacacactgtgaaaattgttaaaagt |
7030482 |
T |
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| Q |
217 |
agtaaatagtaaaagtattaaacagagaaagtaattattacaatgttaacattagcaacaaaatcactattattggatacat------------gtacaa |
304 |
Q |
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| T |
7030483 |
agtaaatagtaaaagtattaaacagagaaagtaattattacagtgttaacattagcaacaaaatcactattattgggtacatgtacaatgttgggtacaa |
7030582 |
T |
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| Q |
305 |
tgtatgacatacttggaaccacgagtatgtgtaaatgtacggtgttgagtacaat |
359 |
Q |
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| T |
7030583 |
tgtatgacatacttcgaaccaagagtacgtgtaaatgtacgatgttgagtacaat |
7030637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 359
Target Start/End: Original strand, 7044616 - 7044952
Alignment:
| Q |
17 |
aattctaacttcggcatgttggcctcttgacttgatatggtttaatatgtttactctcaatataatcatggctagttaagcagcgatagaagtgaaacca |
116 |
Q |
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| T |
7044616 |
aattctaacttcagcatgttggcctcttgacttgatatggtttaatatgtttactctcaatataataatggctagttaagcagcgataaaggtgaaacca |
7044715 |
T |
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| Q |
117 |
gactcttattaagactaacataagagtgattttagttactaagagtgattttagttagtaataccagtatcaaacacacactgtgaaaattgttaaaagt |
216 |
Q |
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| T |
7044716 |
gtctcttatgtatactaacataagagtgattttagttagtaagagtgattttagttagtaatagcagtatcaaacacacactgtgaaaatggttaaaagt |
7044815 |
T |
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| Q |
217 |
agtaaatagtaaaagtattaaacagagaaagtaattattacaatgttaacattagcaacaaaatcactattattggatacatgtacaatgtatgacatac |
316 |
Q |
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| T |
7044816 |
agtaaatagtaaaagtattaaacagagaaagtaattattacagtgttaacattagcaacaaaatcactattattgg------gtacaatgtatgacatac |
7044909 |
T |
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| Q |
317 |
ttggaaccacgagtatgtgtaaatgtacggtgttgagtacaat |
359 |
Q |
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| T |
7044910 |
ttcgaaccatgagtacgtgtaaatgtacgatgttgagtacaat |
7044952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 7036565 - 7036624
Alignment:
| Q |
156 |
taagagtgattttagttagtaataccagtatcaaacacacactgtgaaaattgttaaaag |
215 |
Q |
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| T |
7036565 |
taagggtgattttagttagtactagcagtatcaaacacaccctgtgaaaattgttaaaag |
7036624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 7036455 - 7036489
Alignment:
| Q |
30 |
gcatgttggcctcttgacttgatatggtttaatat |
64 |
Q |
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| T |
7036455 |
gcatgttggcctcttgacttgatatggtttaatat |
7036489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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