View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16975_high_26 (Length: 351)

Name: NF16975_high_26
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16975_high_26
NF16975_high_26
[»] chr7 (12 HSPs)
chr7 (12-351)||(21410406-21410752)
chr7 (266-349)||(9183148-9183231)
chr7 (271-344)||(41519072-41519145)
chr7 (266-351)||(45709665-45709750)
chr7 (310-343)||(9871287-9871320)
chr7 (266-343)||(15137595-15137672)
chr7 (266-335)||(43663052-43663121)
chr7 (310-350)||(25242031-25242071)
chr7 (266-350)||(25590646-25590730)
chr7 (268-343)||(20335790-20335865)
chr7 (266-351)||(48771972-48772057)
chr7 (318-346)||(27776211-27776239)
[»] chr6 (8 HSPs)
chr6 (266-351)||(28363971-28364056)
chr6 (266-343)||(14199904-14199981)
chr6 (292-349)||(3925780-3925837)
chr6 (266-343)||(20213083-20213160)
chr6 (266-343)||(22107106-22107183)
chr6 (266-343)||(31622948-31623025)
chr6 (266-343)||(32050313-32050390)
chr6 (310-350)||(13227159-13227199)
[»] chr2 (12 HSPs)
chr2 (266-343)||(28846733-28846810)
chr2 (268-350)||(31573600-31573682)
chr2 (266-347)||(33582011-33582092)
chr2 (266-343)||(1435106-1435182)
chr2 (266-347)||(37480113-37480194)
chr2 (292-350)||(14500312-14500370)
chr2 (267-344)||(7599939-7600016)
chr2 (266-351)||(25637185-25637270)
chr2 (277-350)||(41202285-41202358)
chr2 (266-342)||(11251130-11251206)
chr2 (291-347)||(25931044-25931100)
chr2 (266-346)||(35203340-35203420)
[»] chr1 (20 HSPs)
chr1 (266-346)||(7219875-7219955)
chr1 (268-351)||(9879472-9879555)
chr1 (266-351)||(52336731-52336816)
chr1 (266-343)||(1094567-1094644)
chr1 (266-343)||(1600249-1600326)
chr1 (266-343)||(6122836-6122913)
chr1 (266-351)||(9643766-9643851)
chr1 (266-351)||(12587304-12587388)
chr1 (266-343)||(16893436-16893513)
chr1 (267-343)||(10526865-10526941)
chr1 (274-342)||(12662325-12662393)
chr1 (266-346)||(28283570-28283650)
chr1 (293-349)||(51703815-51703871)
chr1 (278-350)||(51814529-51814601)
chr1 (266-344)||(44961806-44961884)
chr1 (266-343)||(6650637-6650714)
chr1 (266-343)||(40257441-40257518)
chr1 (270-343)||(44126437-44126510)
chr1 (266-323)||(48619166-48619223)
chr1 (266-342)||(34460866-34460942)
[»] chr8 (17 HSPs)
chr8 (267-351)||(7140743-7140826)
chr8 (266-343)||(43968955-43969032)
chr8 (271-351)||(24675474-24675554)
chr8 (266-351)||(3305145-3305230)
chr8 (266-343)||(11819818-11819895)
chr8 (266-347)||(12281532-12281613)
chr8 (266-332)||(31088726-31088792)
chr8 (266-351)||(4830521-4830606)
chr8 (266-343)||(27750772-27750849)
chr8 (266-335)||(27979207-27979276)
chr8 (266-335)||(28036476-28036545)
chr8 (266-351)||(31087215-31087300)
chr8 (266-347)||(35672482-35672563)
chr8 (266-343)||(35826353-35826430)
chr8 (266-343)||(44780071-44780148)
chr8 (266-342)||(16585445-16585521)
chr8 (266-306)||(34797916-34797956)
[»] chr4 (16 HSPs)
chr4 (266-350)||(21660101-21660185)
chr4 (266-350)||(21668865-21668949)
chr4 (266-343)||(7949411-7949488)
chr4 (266-351)||(28635730-28635815)
chr4 (266-343)||(51954156-51954233)
chr4 (266-343)||(53496919-53496996)
chr4 (266-343)||(49576851-49576928)
chr4 (271-347)||(11592115-11592191)
chr4 (292-343)||(31759641-31759692)
chr4 (266-343)||(8030161-8030238)
chr4 (310-351)||(39509104-39509145)
chr4 (278-347)||(46545749-46545818)
chr4 (310-351)||(47044751-47044792)
chr4 (266-343)||(47230558-47230634)
chr4 (266-338)||(9693455-9693527)
chr4 (310-350)||(41346964-41347004)
[»] chr5 (13 HSPs)
chr5 (266-344)||(19949573-19949651)
chr5 (266-343)||(29173532-29173609)
chr5 (266-343)||(1410618-1410693)
chr5 (266-343)||(16773849-16773926)
chr5 (310-351)||(22020863-22020904)
chr5 (266-343)||(29210400-29210477)
chr5 (271-351)||(21086748-21086828)
chr5 (266-350)||(43442231-43442315)
chr5 (272-342)||(1279034-1279104)
chr5 (310-351)||(14495806-14495847)
chr5 (310-351)||(27596361-27596402)
chr5 (266-351)||(29075815-29075900)
chr5 (310-351)||(41165630-41165671)
[»] scaffold1367 (1 HSPs)
scaffold1367 (266-351)||(797-882)
[»] chr3 (19 HSPs)
chr3 (266-351)||(2667896-2667981)
chr3 (266-351)||(51903835-51903920)
chr3 (269-351)||(44743815-44743897)
chr3 (266-343)||(8170714-8170791)
chr3 (266-343)||(10445096-10445173)
chr3 (310-347)||(21960589-21960626)
chr3 (266-351)||(52769940-52770025)
chr3 (308-347)||(48583449-48583488)
chr3 (293-351)||(4222175-4222233)
chr3 (266-351)||(17035022-17035105)
chr3 (270-351)||(4844472-4844553)
chr3 (270-351)||(4870168-4870249)
chr3 (266-343)||(8075084-8075161)
chr3 (266-351)||(10499066-10499151)
chr3 (266-351)||(28531015-28531100)
chr3 (266-343)||(49397498-49397575)
chr3 (311-351)||(9557354-9557394)
chr3 (310-350)||(31608525-31608565)
chr3 (293-341)||(42465514-42465562)
[»] scaffold0118 (1 HSPs)
scaffold0118 (266-350)||(41590-41674)
[»] scaffold0211 (1 HSPs)
scaffold0211 (270-343)||(24095-24168)
[»] scaffold0299 (1 HSPs)
scaffold0299 (291-351)||(11562-11622)
[»] scaffold0122 (1 HSPs)
scaffold0122 (266-343)||(6879-6953)
[»] scaffold0258 (1 HSPs)
scaffold0258 (267-343)||(15281-15357)


Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 351
Target Start/End: Original strand, 21410406 - 21410752
Alignment:
Q  12 gaacctgtgtcttatttccatattgtcatccttaattcgattataataacattttaaatgaatttaaatctcactctcaaaaaccatctcaaaggatgat 111  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  21410406 gaacctgtgtcttatttccatattgtcatccttaattcgactataataacattttaaatgaatttgaatctcactctcaaaagccatctcaaaggatgat 21410505  T
Q  112 ggtacctaaaagtcatatgtacattcaaccatttgaaaattttaacaaagtgagacttcaatacaaattcaatattcaacctcctcatgcctagtgtaaa 211  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  21410506 ggtacctaaaagtcatatgtacattcaaccacttgaaaattttaacaaagtgagacttcaatacaaattcaatattcaa---cctcatgcctagtgtaaa 21410602  T
Q  212 ttttggactcaattccacatatactgtacatccaacaaccggaga----------nnnnnnnngttttgaagaagttaaattagtctacccaaattgata 301  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||                  ||||||| |||| |||||||||||| ||||||||| |    
T  21410603 ttttggactcaattccacatatattgtacatccaacaaccagagatttttgttttgtttttttgttttgacgaagctaaattagtctatccaaattgaca 21410702  T
Q  302 ccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21410703 tcagacataatcgaatttgagacttcgaggaggagcacactctcagatcc 21410752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 266 - 349
Target Start/End: Original strand, 9183148 - 9183231
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagat 349  Q
    ||||||||||  |||||||| | ||||||||||| |||||| ||||||||| ||||||||| |||||||||||||||| |||||    
T  9183148 ttttgaagaaactaaattagcccacccaaattgacaccagagataatcgaacctgagactttgaggaggagcacactcccagat 9183231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 344
Target Start/End: Original strand, 41519072 - 41519145
Alignment:
Q  271 aagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactct 344  Q
    |||||| |||||||| | ||||||||||| ||| || ||||||||||||||||| | ||| |||||||||||||    
T  41519072 aagaagctaaattagcccacccaaattgacaccggagataatcgaatctgagaccttgagaaggagcacactct 41519145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 45709665 - 45709750
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    |||| |||||| ||| |||| | ||| |||||| || | || ||||||||| ||||||| ||||||||||||||||||||||||||    
T  45709665 ttttaaagaagctaagttagcccacctaaattggtatcggagataatcgaacctgagacctcgaggaggagcacactctcagatcc 45709750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 310 - 343
Target Start/End: Original strand, 9871287 - 9871320
Alignment:
Q  310 aatcgaatctgagacttcgaggaggagcacactc 343  Q
    ||||||||||||||||||||||||||||||||||    
T  9871287 aatcgaatctgagacttcgaggaggagcacactc 9871320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 15137672 - 15137595
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    ||||||||||  |||||||| | ||||||||||| |||||| | |||| || ||||||| | ||||||||||||||||    
T  15137672 ttttgaagaaactaaattagcccacccaaattgacaccagagagaatctaacctgagaccttgaggaggagcacactc 15137595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 335
Target Start/End: Original strand, 43663052 - 43663121
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggagga 335  Q
    ||||||||||| |||||||||| ||||||||||||||| || | | ||||| ||||||  ||||||||||    
T  43663052 ttttgaagaagctaaattagtccacccaaattgataccggagagattcgaacctgagatctcgaggagga 43663121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 350
Target Start/End: Complemental strand, 25242071 - 25242031
Alignment:
Q  310 aatcgaatctgagacttcgaggaggagcacactctcagatc 350  Q
    ||||||||||||||| ||||||||||||| |||||||||||    
T  25242071 aatcgaatctgagacctcgaggaggagcatactctcagatc 25242031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 350
Target Start/End: Complemental strand, 25590730 - 25590646
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatc 350  Q
    ||||||||||| |||||||| | || |||||||| |||  | | ||||||| | ||||| |||||||||||||||||| ||||||    
T  25590730 ttttgaagaagctaaattagcccactcaaattgacaccgaagaaaatcgaacccgagacctcgaggaggagcacactcccagatc 25590646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 343
Target Start/End: Original strand, 20335790 - 20335865
Alignment:
Q  268 ttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    |||||||||||||||||| | | ||||||||| | | |  | ||||||| ||||||| ||||||||||||||||||    
T  20335790 ttgaagaagttaaattagcccatccaaattgacatcggtgagaatcgaacctgagacctcgaggaggagcacactc 20335865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 351
Target Start/End: Complemental strand, 48772057 - 48771972
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    |||| |||||| |||||||| | ||| |||||| |||  |  ||||||||| ||||||| || ||||||||||||||| |||||||    
T  48772057 tttttaagaagctaaattagcccacctaaattggtacttgggataatcgaacctgagacctcaaggaggagcacactcccagatcc 48771972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Complemental strand, 27776239 - 27776211
Alignment:
Q  318 ctgagacttcgaggaggagcacactctca 346  Q
    |||||||||||||||||||||||||||||    
T  27776239 ctgagacttcgaggaggagcacactctca 27776211  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 266 - 351
Target Start/End: Complemental strand, 28364056 - 28363971
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    |||||||||| ||||||||| | | ||||||||| |||||| ||||||||||||||||| | |||||||||||||||| |||||||    
T  28364056 ttttgaagaaattaaattagcccatccaaattgacaccagagataatcgaatctgagaccttgaggaggagcacactcgcagatcc 28363971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 14199904 - 14199981
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    |||| |||||| |||||||||| ||||||||||| || |||   ||||||||||||||| | ||||||||||||||||    
T  14199904 tttttaagaagctaaattagtccacccaaattgacactagaaggaatcgaatctgagaccttgaggaggagcacactc 14199981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 3925837 - 3925780
Alignment:
Q  292 caaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagat 349  Q
    ||||||||||||||| | ||| ||||||||||||| ||| |||| |||||||||||||    
T  3925837 caaattgataccagagagaattgaatctgagactttgagaaggaacacactctcagat 3925780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 20213160 - 20213083
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    ||||||||||| |||||||| | ||||||||||| || |||   ||||||| ||||||| | ||||||||||||||||    
T  20213160 ttttgaagaagctaaattagcccacccaaattgacactagagggaatcgaacctgagacattgaggaggagcacactc 20213083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 22107183 - 22107106
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    ||||||||||| |||||||| | ||||||||||| || |||   ||||||| ||||||| | ||||||||||||||||    
T  22107183 ttttgaagaagctaaattagcccacccaaattgacactagagggaatcgaacctgagacattgaggaggagcacactc 22107106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 31622948 - 31623025
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    ||||||||||| |||||||| | ||||||||||| ||| ||   | || || ||||||| ||||||||||||||||||    
T  31622948 ttttgaagaagctaaattagcccacccaaattgacaccggagtgattcaaacctgagacctcgaggaggagcacactc 31623025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 32050313 - 32050390
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    |||| ||||| ||||||||| ||||||||||||| | | || | ||||| ||||||||| | |||||||| |||||||    
T  32050313 tttttaagaaattaaattagcctacccaaattgacatcggaaagaatcggatctgagaccttgaggaggatcacactc 32050390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 13227159 - 13227199
Alignment:
Q  310 aatcgaatctgagacttcgaggaggagcacactctcagatc 350  Q
    |||||||  ||||||||||||||||||||||||| ||||||    
T  13227159 aatcgaacttgagacttcgaggaggagcacactcccagatc 13227199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 28846810 - 28846733
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    |||| ||||||||||||||||||||||||||||| | | |  ||||||||| ||||||| ||||||||||||||||||    
T  28846810 tttttaagaagttaaattagtctacccaaattgacatcggtgataatcgaacctgagacatcgaggaggagcacactc 28846733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 350
Target Start/End: Original strand, 31573600 - 31573682
Alignment:
Q  268 ttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatc 350  Q
    |||||||||||||||||||| ||| ||||||| | |  | | ||||||| ||||||| || ||||||||||||||||||||||    
T  31573600 ttgaagaagttaaattagtccacctaaattgacatcgaagagaatcgaacctgagacatcaaggaggagcacactctcagatc 31573682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 347
Target Start/End: Complemental strand, 33582092 - 33582011
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcag 347  Q
    ||||||||||| |||||||||| ||| ||||||| |  ||| | ||||||| ||||||| || |||||||||||||||||||    
T  33582092 ttttgaagaagctaaattagtccacctaaattgacattagagagaatcgaacctgagacctcaaggaggagcacactctcag 33582011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 1435182 - 1435106
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    ||||||||||| |||||||| | ||||||||||| |||||| | ||||||| ||||||| | |||||| |||||||||    
T  1435182 ttttgaagaagctaaattagcccacccaaattgacaccagagagaatcgaa-ctgagaccttgaggagaagcacactc 1435106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 347
Target Start/End: Complemental strand, 37480194 - 37480113
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcag 347  Q
    ||||||||||| |||||||| | ||||||||||  ||| |  | ||||||| ||||||| | ||||||||||||||||||||    
T  37480194 ttttgaagaagctaaattagcccacccaaattgggaccggggagaatcgaacctgagaccttgaggaggagcacactctcag 37480113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 350
Target Start/End: Complemental strand, 14500370 - 14500312
Alignment:
Q  292 caaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatc 350  Q
    |||||||  |||||| | ||||||||||||||| | |||||||||||||||| ||||||    
T  14500370 caaattggcaccagagagaatcgaatctgagacctagaggaggagcacactcccagatc 14500312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 344
Target Start/End: Original strand, 7599939 - 7600016
Alignment:
Q  267 tttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactct 344  Q
    |||||| ||| ||||||||||||| |||||| |||||  | | |||||||  ||| || |||||||||||||||||||    
T  7599939 tttgaataagctaaattagtctacacaaatttataccgaagagaatcgaacatgaaacctcgaggaggagcacactct 7600016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 351
Target Start/End: Complemental strand, 25637270 - 25637185
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    |||||||||||||||||||| | ||| ||||||  | | || | || |||| ||||||| ||||| |||||||||||| |||||||    
T  25637270 ttttgaagaagttaaattagcccacctaaattggcatcggagagaaccgaacctgagacctcgagaaggagcacactcccagatcc 25637185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 350
Target Start/End: Complemental strand, 41202358 - 41202285
Alignment:
Q  277 ttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatc 350  Q
    ||||||||||| | ||||||||| | |||| | ||| ||| || |||||||||||||||||| |||| ||||||    
T  41202358 ttaaattagtccatccaaattgacatcagagaaaattgaacctaagacttcgaggaggagcatactcccagatc 41202285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 342
Target Start/End: Complemental strand, 11251206 - 11251130
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacact 342  Q
    ||||||| ||||||||||||   ||| ||||||| |||||| | |||| || ||||||| | |||||||||||||||    
T  11251206 ttttgaataagttaaattagcacacctaaattgacaccagagagaatcaaacctgagaccttgaggaggagcacact 11251130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 347
Target Start/End: Complemental strand, 25931100 - 25931044
Alignment:
Q  291 ccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcag 347  Q
    ||||||||| |||| | | |||||||||||||||||||||||  | |||||||||||    
T  25931100 ccaaattgacaccaaagagaatcgaatctgagacttcgaggataaacacactctcag 25931044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 346
Target Start/End: Original strand, 35203340 - 35203420
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctca 346  Q
    ||||||||||| |||||||  | ||  ||||||| |||| | |||||||||  |||||||| ||||| |||||||||||||    
T  35203340 ttttgaagaagctaaattaacccacttaaattgacaccaaagataatcgaacatgagactttgaggatgagcacactctca 35203420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 266 - 346
Target Start/End: Original strand, 7219875 - 7219955
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctca 346  Q
    ||||||||||| |||||||||| ||| |||||| || || | | ||||||| |||||||||||||||||||||||||||||    
T  7219875 ttttgaagaagctaaattagtccacctaaattggtatcaaagagaatcgaacctgagacttcgaggaggagcacactctca 7219955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 268 - 351
Target Start/End: Complemental strand, 9879555 - 9879472
Alignment:
Q  268 ttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    |||||||||||||||||| | ||||||||||| |  ||| ||||||||||||||||| || |||| ||| ||||||||||||||    
T  9879555 ttgaagaagttaaattagcccacccaaattgacataagagataatcgaatctgagacctcaaggaagagtacactctcagatcc 9879472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 52336731 - 52336816
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    |||||||||| ||||||||| | | ||||||||| |||||| ||||||||| ||||||  |  ||||||||||||||| |||||||    
T  52336731 ttttgaagaaattaaattagcccatccaaattgacaccagagataatcgaacctgagatcttaaggaggagcacactcccagatcc 52336816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 1094644 - 1094567
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    |||||||||||||||||||| | ||| ||||||  ||| || | |||||||| |||||| ||| ||||||||||||||    
T  1094644 ttttgaagaagttaaattagcccacctaaattggcaccggagagaatcgaatttgagacctcgtggaggagcacactc 1094567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 1600249 - 1600326
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    ||||||||||| ||| |||||| | ||||||||| |||||| | ||||||| |||| ||||  |||||||||||||||    
T  1600249 ttttgaagaagctaagttagtccatccaaattgacaccagagagaatcgaacctgaaactttaaggaggagcacactc 1600326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 6122913 - 6122836
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    ||||||||||| |||||||| | ||||||||||| || |||   ||||||| ||||||| | ||||||||||||||||    
T  6122913 ttttgaagaagctaaattagcccacccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacactc 6122836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 9643766 - 9643851
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    |||||||||||||||||||  ||||  ||||||| ||| || ||||| ||||||||||| | ||||| || ||||||| |||||||    
T  9643766 ttttgaagaagttaaattaacctacaaaaattgacaccggagataattgaatctgagaccttgaggatgaacacactcccagatcc 9643851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 351
Target Start/End: Complemental strand, 12587388 - 12587304
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    ||||||||||| |||||||| | ||| ||||||  ||| || | ||||||| ||||||| |||||||||||||||||| |||||||    
T  12587388 ttttgaagaagctaaattagcccacctaaattgc-accggagagaatcgaacctgagacctcgaggaggagcacactcacagatcc 12587304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 16893513 - 16893436
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    ||||||||||| |||||||| | || |||||||| ||| || | ||||||| ||||||| ||||||||||| ||||||    
T  16893513 ttttgaagaagctaaattagcccactcaaattgacaccggagaaaatcgaacctgagacctcgaggaggagtacactc 16893436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 343
Target Start/End: Complemental strand, 10526941 - 10526865
Alignment:
Q  267 tttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    |||||||||| |||||||  | |||||||||||  ||||| | ||||||||||||||| | ||||||||||| ||||    
T  10526941 tttgaagaagctaaattaacccacccaaattgactccagagagaatcgaatctgagaccttgaggaggagcaaactc 10526865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 12662393 - 12662325
Alignment:
Q  274 aagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacact 342  Q
    |||||||||||||| ||| ||||||  |  ||| ||||||||| ||||||| |||||||||||||||||    
T  12662393 aagttaaattagtccacctaaattggcattagagataatcgaacctgagacatcgaggaggagcacact 12662325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 346
Target Start/End: Complemental strand, 28283650 - 28283570
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctca 346  Q
    |||| ||||||||||||||| ||||  ||||||| |||||| | ||||||| ||||||| || |||| || ||||||||||    
T  28283650 tttttaagaagttaaattagactacataaattgacaccagagagaatcgaacctgagacatcaaggaagaacacactctca 28283570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 51703871 - 51703815
Alignment:
Q  293 aaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagat 349  Q
    |||||||||||||| | ||||||| |||| |||| |||||||||||||||| |||||    
T  51703871 aaattgataccagagagaatcgaacctgaaactttgaggaggagcacactcccagat 51703815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 51814601 - 51814529
Alignment:
Q  278 taaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatc 350  Q
    |||||||| | ||||||||||  ||| || | ||||||| ||||||| | |||||||||||||||||||||||    
T  51814601 taaattagcccacccaaattggcaccggagagaatcgaacctgagaccttgaggaggagcacactctcagatc 51814529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 344
Target Start/End: Complemental strand, 44961884 - 44961806
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactct 344  Q
    |||| |||||| |||||||| | ||||||||||| || ||| | ||||||| |||||||   |||||||||||||||||    
T  44961884 tttttaagaagctaaattagcccacccaaattgacactagagagaatcgaacctgagaccctgaggaggagcacactct 44961806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 6650714 - 6650637
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    ||||||||||| |||| || || ||| ||||||| |||||| | ||||||| ||||||| | ||||||||||| ||||    
T  6650714 ttttgaagaagctaaactaatccacctaaattgacaccagagagaatcgaacctgagacattgaggaggagcatactc 6650637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 40257518 - 40257441
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    ||||||||||| |||| ||| | ||||||||||| ||| || | ||| |||  |||||| ||||||||||||||||||    
T  40257518 ttttgaagaagctaaactagcccacccaaattgacaccggatagaattgaacttgagacctcgaggaggagcacactc 40257441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 343
Target Start/End: Complemental strand, 44126510 - 44126437
Alignment:
Q  270 gaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    ||||||| |||||||| ||||| ||||||  || ||| | |||| |||||||||| ||| ||||||||||||||    
T  44126510 gaagaagctaaattagcctacctaaattggcactagagagaatcaaatctgagacctcgtggaggagcacactc 44126437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 48619166 - 48619223
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgaga 323  Q
    |||||||||||||||||||||| || |||||||| ||| || ||||| ||| ||||||    
T  48619166 ttttgaagaagttaaattagtccactcaaattgacaccggagataatagaacctgaga 48619223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 342
Target Start/End: Original strand, 34460866 - 34460942
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacact 342  Q
    ||||||||||  |||||||||| ||| ||||||  |||||| ||||| ||||||||||| |  ||||||| ||||||    
T  34460866 ttttgaagaaactaaattagtccacctaaattggaaccagagataattgaatctgagaccttcaggaggaacacact 34460942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 267 - 351
Target Start/End: Complemental strand, 7140826 - 7140743
Alignment:
Q  267 tttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    |||||||||| |||||||| | ||||||||||||||| || | ||||||||||||||  |||||||||||||||| | |||||||    
T  7140826 tttgaagaaggtaaattagcccacccaaattgatacc-gagagaatcgaatctgagagctcgaggaggagcacacacccagatcc 7140743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 43968955 - 43969032
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    |||| |||||| |||||||||| ||| ||||| | |||||| ||||||||||||||||| ||  ||||||||||||||    
T  43968955 tttttaagaagataaattagtccacctaaattaacaccagagataatcgaatctgagacctcagggaggagcacactc 43969032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 271 - 351
Target Start/End: Original strand, 24675474 - 24675554
Alignment:
Q  271 aagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    ||||||||||||||||  | ||||||| | | |||| | ||||||||||||||| | ||| ||||||||||||||||||||    
T  24675474 aagaagttaaattagttcatccaaattaacatcagagaaaatcgaatctgagaccttgagaaggagcacactctcagatcc 24675554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 3305145 - 3305230
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    ||||| ||||| |||||||| | ||| ||||||  |||||| |||||||||| |||||| | |||||||||||| ||| |||||||    
T  3305145 ttttgcagaagataaattagcccacctaaattggcaccagagataatcgaatttgagaccttgaggaggagcacgctcccagatcc 3305230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 11819895 - 11819818
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    ||||||||||| |||||||| | ||||||||||| || |||   ||||||| ||||||| | ||||||||||||||||    
T  11819895 ttttgaagaagctaaattagcccacccaaattgacactagagtgaatcgaacctgagaccttgaggaggagcacactc 11819818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 347
Target Start/End: Complemental strand, 12281613 - 12281532
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcag 347  Q
    ||||||||||| ||||||||||  |  ||||||| | | || | ||||||||||||||| ||||||||| ||||||||||||    
T  12281613 ttttgaagaagctaaattagtcagcttaaattgacatcggagaaaatcgaatctgagacctcgaggaggggcacactctcag 12281532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 332
Target Start/End: Complemental strand, 31088792 - 31088726
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgagga 332  Q
    |||||||||||||||||||| ||||| |||||| || |||| | |||| || ||||||| |||||||    
T  31088792 ttttgaagaagttaaattagcctacctaaattggtatcagagagaatcaaacctgagacctcgagga 31088726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 351
Target Start/End: Complemental strand, 4830606 - 4830521
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    ||||||||||| ||||||| || | ||||||||| |||  | | | | ||| ||||||| |||||||||| |||||||||||||||    
T  4830606 ttttgaagaagctaaattaatccatccaaattgacaccgtataaatttgaacctgagacctcgaggaggaacacactctcagatcc 4830521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 27750849 - 27750772
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    |||| |||||| |||||||||| | ||||||||| || |||   ||||||| ||||||| | ||||||||||||||||    
T  27750849 tttttaagaagctaaattagtccatccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacactc 27750772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 335
Target Start/End: Complemental strand, 27979276 - 27979207
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggagga 335  Q
    |||||||||||||||||||| | | ||||||||| || ||| |||||||||  | |||||| ||||||||    
T  27979276 ttttgaagaagttaaattagcccatccaaattgacactagagataatcgaacttaagactttgaggagga 27979207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 335
Target Start/End: Complemental strand, 28036545 - 28036476
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggagga 335  Q
    |||||||||||||||||||| | | ||||||||| || ||| |||||||||  | |||||| ||||||||    
T  28036545 ttttgaagaagttaaattagcccatccaaattgacactagagataatcgaacttaagactttgaggagga 28036476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 31087215 - 31087300
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    |||| ||||||||||||||| |||   ||||||| ||| || ||||||||| ||||||| ||||||||| | | |||| |||||||    
T  31087215 tttttaagaagttaaattagcctatttaaattgacaccggagataatcgaacctgagacctcgaggagggggatactcccagatcc 31087300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 35672482 - 35672563
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcag 347  Q
    ||||||||||| |||||||||| | ||||||||| ||| || | |||| || |||  ||||| |||||||||| ||||||||    
T  35672482 ttttgaagaagctaaattagtccatccaaattgacaccggagagaatcaaacctgcaacttcaaggaggagcatactctcag 35672563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 35826430 - 35826353
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    |||| ||||||||||||||||| ||| ||||||| ||| |  | ||||||||| || ||||  |||||||||||||||    
T  35826430 tttttaagaagttaaattagtccacctaaattgacaccggtgagaatcgaatccgaaactttaaggaggagcacactc 35826353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 44780071 - 44780148
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    ||||||||||| |||||||| | ||||||||||| || |||   |||| || ||||||| | ||||||||||||||||    
T  44780071 ttttgaagaagctaaattagcccacccaaattgacactagagggaatcaaacctgagaccttgaggaggagcacactc 44780148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 342
Target Start/End: Original strand, 16585445 - 16585521
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacact 342  Q
    ||||||||||| |||||||| |||| |||||||  | |||| ||||||||| |||| ||  ||| ||||||||||||    
T  16585445 ttttgaagaagctaaattagcctactcaaattggcatcagagataatcgaagctgaaaccacgaagaggagcacact 16585521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 34797956 - 34797916
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccaga 306  Q
    ||||||||||||||||||||  || ||||||||||||||||    
T  34797956 ttttgaagaagttaaattagcttatccaaattgataccaga 34797916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 266 - 350
Target Start/End: Original strand, 21660101 - 21660185
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatc 350  Q
    |||| |||||| |||||||||||||| ||||||| || ||| |||||||||  |||||| ||||||| |||||||||| ||||||    
T  21660101 tttttaagaagctaaattagtctacctaaattgacactagagataatcgaacttgagacctcgaggaagagcacactcccagatc 21660185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 266 - 350
Target Start/End: Original strand, 21668865 - 21668949
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatc 350  Q
    |||| |||||| |||||||||||||| ||||||| || ||| |||||||||  |||||| ||||||| |||||||||| ||||||    
T  21668865 tttttaagaagctaaattagtctacctaaattgacactagagataatcgaacttgagacctcgaggaagagcacactcccagatc 21668949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 7949411 - 7949488
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    ||||||||||| |||||||| | ||| ||||||| |||||| | ||||||| ||||||| | ||||||||||||||||    
T  7949411 ttttgaagaagctaaattagcccacctaaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactc 7949488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 351
Target Start/End: Complemental strand, 28635815 - 28635730
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    ||||||||||| |||||||| | ||||||||||  |||||| | ||||||| || |||| || ||||||||||||||| |||||||    
T  28635815 ttttgaagaagctaaattagcccacccaaattggcaccagagagaatcgaacctaagacctccaggaggagcacactcccagatcc 28635730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 51954233 - 51954156
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    ||||||||||| |||||||| | ||||||||||| ||| || |||||| || ||||||| ||||||||||||| ||||    
T  51954233 ttttgaagaagctaaattagcccacccaaattgacaccggagataatcaaacctgagacctcgaggaggagcatactc 51954156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 53496996 - 53496919
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    |||| ||||||||||||||||| | ||||||||   ||||| | |||| |||||||||||| ||||||||||||||||    
T  53496996 tttttaagaagttaaattagtccaaccaaattggctccagagagaatcaaatctgagactttgaggaggagcacactc 53496919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 49576851 - 49576928
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    ||||||||||||||| |||||| ||||||||||| |   || | ||||||| ||||||| | ||||||||||||||||    
T  49576851 ttttgaagaagttaagttagtccacccaaattgacattggagagaatcgaacctgagaccttgaggaggagcacactc 49576928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 347
Target Start/End: Original strand, 11592115 - 11592191
Alignment:
Q  271 aagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcag 347  Q
    ||||||||||||||  | || ||||||| | ||||| ||||||||| || |||| | ||||||||||||||||||||    
T  11592115 aagaagttaaattaaccaactcaaattggttccagagataatcgaacctaagacctggaggaggagcacactctcag 11592191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 343
Target Start/End: Original strand, 31759641 - 31759692
Alignment:
Q  292 caaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    ||||||| ||||||| | ||||||||||||||| | ||||||||||||||||    
T  31759641 caaattggtaccagaaagaatcgaatctgagaccttgaggaggagcacactc 31759692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 8030161 - 8030238
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    ||||||||||| |||||||| | ||||||||||| || |||   |||||||  |||||| | ||||||||||||||||    
T  8030161 ttttgaagaagctaaattagcccacccaaattgacactagagggaatcgaacttgagaccttgaggaggagcacactc 8030238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 351
Target Start/End: Complemental strand, 39509145 - 39509104
Alignment:
Q  310 aatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    ||||||| ||||||| |||||||||||||||||| |||||||    
T  39509145 aatcgaacctgagacctcgaggaggagcacactcccagatcc 39509104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 347
Target Start/End: Complemental strand, 46545818 - 46545749
Alignment:
Q  278 taaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcag 347  Q
    |||||||||| | | ||||||| | |||| | ||||||||||||||  | ||||||||||||||||||||    
T  46545818 taaattagtccatctaaattgacatcagagaaaatcgaatctgagatcttgaggaggagcacactctcag 46545749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 351
Target Start/End: Complemental strand, 47044792 - 47044751
Alignment:
Q  310 aatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    ||||||| ||||||| ||||||||||||| ||||||||||||    
T  47044792 aatcgaacctgagacctcgaggaggagcaaactctcagatcc 47044751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 47230634 - 47230558
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    ||||||||||| |||||||| | ||| |||||| ||| ||| | ||| |||| ||||||||||| |||||||||||||    
T  47230634 ttttgaagaagataaattagcccacctaaattggtactaga-agaattgaatttgagacttcgatgaggagcacactc 47230558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 338
Target Start/End: Original strand, 9693455 - 9693527
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagca 338  Q
    ||||||||||| |||||||| | ||||||||||| || |||   ||||||| ||||||| | |||||||||||    
T  9693455 ttttgaagaaggtaaattagcccacccaaattgacactagagggaatcgaacctgagaccttgaggaggagca 9693527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 41346964 - 41347004
Alignment:
Q  310 aatcgaatctgagacttcgaggaggagcacactctcagatc 350  Q
    ||||||| ||||||||||||||||||||| |||| ||||||    
T  41346964 aatcgaacctgagacttcgaggaggagcatactcccagatc 41347004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 266 - 344
Target Start/End: Original strand, 19949573 - 19949651
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactct 344  Q
    |||||||||||||||||||||||| ||||||||| ||| |  | ||| ||| ||||||  |||||||||||||||||||    
T  19949573 ttttgaagaagttaaattagtctatccaaattgacaccggtgaaaattgaacctgagagctcgaggaggagcacactct 19949651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 29173609 - 29173532
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    |||| |||||| |||||||| | ||| ||||||| |||||| ||||||||| |||| || ||||||||||||||||||    
T  29173609 tttttaagaagctaaattagcccacctaaattgacaccagagataatcgaacctgaaacctcgaggaggagcacactc 29173532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 1410618 - 1410693
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    ||||||||||| |||||||| |||||||| |||| |||| | | ||||||| ||||||| ||||||||||||||||||    
T  1410618 ttttgaagaagctaaattagcctacccaa-ttgacaccacagagaatcgaa-ctgagacctcgaggaggagcacactc 1410693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 16773926 - 16773849
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    ||||||||||| |||||||| | ||| ||||||  | |||| | ||||||| ||||||| ||||||||||||||||||    
T  16773926 ttttgaagaagctaaattagcccacctaaattggcatcagagagaatcgaacctgagacctcgaggaggagcacactc 16773849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 310 - 351
Target Start/End: Original strand, 22020863 - 22020904
Alignment:
Q  310 aatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    |||||||||||||||||| ||||||||||||||| |||||||    
T  22020863 aatcgaatctgagacttcaaggaggagcacactcccagatcc 22020904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 29210477 - 29210400
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    |||| |||||| |||||||||| ||| |||||||||||||| | ||| |||  ||| || ||||||||||||||||||    
T  29210477 tttttaagaagctaaattagtccacctaaattgataccagagagaattgaacttgaaacctcgaggaggagcacactc 29210400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 351
Target Start/End: Complemental strand, 21086828 - 21086748
Alignment:
Q  271 aagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    |||||||||||||||   | | ||||||| |||||| ||||||||||||||||  | |||||||||||||||  |||||||    
T  21086828 aagaagttaaattaggtcatctaaattgacaccagagataatcgaatctgagatcttgaggaggagcacactgccagatcc 21086748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 350
Target Start/End: Complemental strand, 43442315 - 43442231
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatc 350  Q
    ||||||||||  |||||||| | | ||||||||| | |||| | ||||||| ||||||| | |||||||||||||||| ||||||    
T  43442315 ttttgaagaaactaaattagcccatccaaattgacaacagagagaatcgaacctgagaccttgaggaggagcacactcccagatc 43442231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 342
Target Start/End: Complemental strand, 1279104 - 1279034
Alignment:
Q  272 agaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacact 342  Q
    ||||| |||||||||| ||||||||||| |||||| | |||| ||  |||||| |||| ||||||||||||    
T  1279104 agaagctaaattagtccacccaaattgacaccagagagaatctaacttgagacctcgatgaggagcacact 1279034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 351
Target Start/End: Original strand, 14495806 - 14495847
Alignment:
Q  310 aatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    |||| |||||||||| |||||||||||||||||| |||||||    
T  14495806 aatcaaatctgagacctcgaggaggagcacactcccagatcc 14495847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 351
Target Start/End: Complemental strand, 27596402 - 27596361
Alignment:
Q  310 aatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    |||||||||| |||| ||||||||||| ||||||||||||||    
T  27596402 aatcgaatctaagacctcgaggaggaggacactctcagatcc 27596361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 351
Target Start/End: Complemental strand, 29075900 - 29075815
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    ||||||||||| |||||||| | | | ||||||  |||||| | |||||||  |||||  |||||||||||||||||| |||||||    
T  29075900 ttttgaagaagctaaattagcccatctaaattggcaccagagagaatcgaacatgagatctcgaggaggagcacactcccagatcc 29075815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 351
Target Start/End: Original strand, 41165630 - 41165671
Alignment:
Q  310 aatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    |||||||||| |||||||||| |||||||||||| |||||||    
T  41165630 aatcgaatctaagacttcgagaaggagcacactcccagatcc 41165671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1367 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 797 - 882
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    ||||||| ||| ||||||  || ||||||||| |||| ||| | ||||||| ||||||||||||||||||||||| || |||||||    
T  797 ttttgaataagctaaatttatccacccaaattaatactagagagaatcgaacctgagacttcgaggaggagcacattcccagatcc 882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 351
Target Start/End: Complemental strand, 2667981 - 2667896
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    ||||||||||| |||| ||| | ||| ||||||| || ||| ||||||||| ||||||| ||||||| |||||||||| |||||||    
T  2667981 ttttgaagaagctaaactagcccacctaaattgacactagagataatcgaacctgagacctcgaggaagagcacactcccagatcc 2667896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 51903835 - 51903920
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    ||||||||||| |||||||| | || |||||||| ||| || | ||||||| |||||||  ||||||||||||||||| |||||||    
T  51903835 ttttgaagaagctaaattagcccactcaaattgacaccggagagaatcgaacctgagaccacgaggaggagcacactcccagatcc 51903920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 351
Target Start/End: Original strand, 44743815 - 44743897
Alignment:
Q  269 tgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    |||||||| |||||||  | ||||||||||  ||  || ||||||||| ||||||| |||||||||||||||||| |||||||    
T  44743815 tgaagaagctaaattaacccacccaaattggcactggagataatcgaacctgagacctcgaggaggagcacactcccagatcc 44743897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 8170791 - 8170714
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    |||||||||| ||||||||| | ||||||||||| ||||||   ||||||| ||||||| | ||| ||||||||||||    
T  8170791 ttttgaagaatttaaattagcccacccaaattgacaccagaggaaatcgaacctgagaccttgagtaggagcacactc 8170714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 10445096 - 10445173
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    ||||||||||| |||||||| | || ||||||   |||||| | ||||||| ||||||| ||||||||||||||||||    
T  10445096 ttttgaagaagctaaattagcccactcaaattagcaccagagagaatcgaacctgagacctcgaggaggagcacactc 10445173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 310 - 347
Target Start/End: Complemental strand, 21960626 - 21960589
Alignment:
Q  310 aatcgaatctgagacttcgaggaggagcacactctcag 347  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  21960626 aatcgaatctgagacctcgaggaggagcacactctcag 21960589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 52769940 - 52770025
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    ||||||||||| |||||||| | ||| ||||||| || | | | ||||||| ||||||| || ||||||||||||||| |||||||    
T  52769940 ttttgaagaagctaaattagcccacctaaattgacactaaagagaatcgaacctgagacctcaaggaggagcacactcccagatcc 52770025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 347
Target Start/End: Original strand, 48583449 - 48583488
Alignment:
Q  308 ataatcgaatctgagacttcgaggaggagcacactctcag 347  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  48583449 ataatcgaatctgagactttgaggaggaggacactctcag 48583488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 351
Target Start/End: Complemental strand, 4222233 - 4222175
Alignment:
Q  293 aaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    ||||||| |||||| | ||||||| || |||||| |||||||||||||||| |||||||    
T  4222233 aaattgacaccagagagaatcgaacctaagactttgaggaggagcacactcccagatcc 4222175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 351
Target Start/End: Complemental strand, 17035105 - 17035022
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    |||| ||||||||||||||||| |||||||||||||||    | ||||||| ||||||| | ||||| |||  |||||||||||||    
T  17035105 tttttaagaagttaaattagtccacccaaattgataccgaggagaatcgaacctgagaccttgaggatgag--cactctcagatcc 17035022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 351
Target Start/End: Original strand, 4844472 - 4844553
Alignment:
Q  270 gaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    ||||||| |||||||| | || |||||||  ||| || | ||||||  ||||||| |||||||||||||||||| |||||||    
T  4844472 gaagaagctaaattagcccacacaaattggcaccggagagaatcgatcctgagacctcgaggaggagcacactcccagatcc 4844553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 351
Target Start/End: Original strand, 4870168 - 4870249
Alignment:
Q  270 gaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    ||||||| |||||||| | || |||||||  ||| || | ||||||  ||||||| |||||||||||||||||| |||||||    
T  4870168 gaagaagctaaattagcccacacaaattggcaccggagagaatcgatcctgagacctcgaggaggagcacactcccagatcc 4870249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 8075084 - 8075161
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    ||||||||||| |||||||| | ||||||||||| || |||   ||||||| |||| || | ||||||||||||||||    
T  8075084 ttttgaagaagctaaattagcccacccaaattgacactagagggaatcgaacctgaaaccttgaggaggagcacactc 8075161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 10499066 - 10499151
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    ||||||||||| |||||||| | ||||||||||| | | || | ||||||| ||||||| || |||| ||||| |||| |||||||    
T  10499066 ttttgaagaagctaaattagcccacccaaattgacatcggagagaatcgaacctgagacctcaaggaagagcagactcccagatcc 10499151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 28531015 - 28531100
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    ||||||| ||| |||||||| | ||||||||||| |||||| | ||| ||  || |||| ||||||||||||| |||| |||||||    
T  28531015 ttttgaataagctaaattagcccacccaaattgacaccagagagaattgagcctaagacctcgaggaggagcatactcccagatcc 28531100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 49397498 - 49397575
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    ||||||||||| |||||||||| ||| ||||||| | |  | |||||||||  |||||| |||||||| |||||||||    
T  49397498 ttttgaagaagctaaattagtccacctaaattgacatctaagataatcgaacatgagacctcgaggagaagcacactc 49397575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 351
Target Start/End: Complemental strand, 9557394 - 9557354
Alignment:
Q  311 atcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    |||||| ||||||  ||||||||||||||||||||||||||    
T  9557394 atcgaacctgagatctcgaggaggagcacactctcagatcc 9557354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 31608525 - 31608565
Alignment:
Q  310 aatcgaatctgagacttcgaggaggagcacactctcagatc 350  Q
    |||| |||||||||| |||||||||||||||||| ||||||    
T  31608525 aatcaaatctgagacctcgaggaggagcacactcccagatc 31608565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 42465514 - 42465562
Alignment:
Q  293 aaattgataccagacataatcgaatctgagacttcgaggaggagcacac 341  Q
    |||||||||| | | |||||||||||||||||||  |||||||||||||    
T  42465514 aaattgatactaaagataatcgaatctgagactttaaggaggagcacac 42465562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 266 - 350
Target Start/End: Original strand, 41590 - 41674
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatc 350  Q
    ||||||||| | |||||||| | ||||||||||| | |||| | ||| ||| ||||||| ||||||||||||| |||||||||||    
T  41590 ttttgaagaggctaaattagcccacccaaattgacatcagagagaattgaacctgagacctcgaggaggagcatactctcagatc 41674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 343
Target Start/End: Complemental strand, 24168 - 24095
Alignment:
Q  270 gaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    |||||||||||||||| | || |||||||  | |||| ||||||||| |||| ||||||| |||||||||||||    
T  24168 gaagaagttaaattagcccactcaaattggcatcagagataatcgaacctgacacttcgaagaggagcacactc 24095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 351
Target Start/End: Complemental strand, 11622 - 11562
Alignment:
Q  291 ccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactctcagatcc 351  Q
    ||||||| | |||||| | ||||||| ||||||| |||||||||||||||||| |||||||    
T  11622 ccaaattaacaccagagagaatcgaacctgagacctcgaggaggagcacactcccagatcc 11562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 6879 - 6953
Alignment:
Q  266 ttttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    ||||||||||| |||||||| | || |||||||| |||||| ||   |||| ||||||||| ||||||||||||||||    
T  6879 ttttgaagaagctaaattagcccactcaaattgacaccagagat---cgaacctgagactttgaggaggagcacactc 6953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 343
Target Start/End: Original strand, 15281 - 15357
Alignment:
Q  267 tttgaagaagttaaattagtctacccaaattgataccagacataatcgaatctgagacttcgaggaggagcacactc 343  Q
    |||||||||| |||||||| | ||| ||||||  | | || | ||||||| ||||||| ||||||||||||||||||    
T  15281 tttgaagaagctaaattagcccacctaaattggcatccgagagaatcgaacctgagacctcgaggaggagcacactc 15357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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