View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16975_high_28 (Length: 342)
Name: NF16975_high_28
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 2125141 - 2125440
Alignment:
| Q |
18 |
gaaggcaccaccaactcctccacctattgtgaaaacacctccttatcaatcaccaccaatagttaaaccaccagttgctccatctccaccacctactcca |
117 |
Q |
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| T |
2125141 |
gaaggcaccaccaactcctccacctattgtgaaaacacctccttatcaatcaccaccaatagttaaaccaccagttgctccatctccaccacctactcca |
2125240 |
T |
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| Q |
118 |
atagtcaaatcatggaagggtaagtcaatttccattta--tgtctttaatatgtaacattttaataacacataagactatgttcatgtttctaaattgtg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2125241 |
atagtcaaatcatggaagggtaagtcaatttccatttacatgtctttaatatgtaacattttaataacacataagactatgttcatgtttctaaattgtg |
2125340 |
T |
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| Q |
216 |
gtctcaatataatagtttagaatttagaaccatacctaaccactaaaattttagtctaaatatttatatacaaagatatgattagatgtttggcataaaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2125341 |
gtctcaatataatagtttagaatttagaaccatacttaaccactaaaattttagtataaatatttatataaaaagatatgattagatgtttggcataaaa |
2125440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 140
Target Start/End: Original strand, 2140306 - 2140334
Alignment:
| Q |
112 |
actccaatagtcaaatcatggaagggtaa |
140 |
Q |
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| T |
2140306 |
actccaatagtcaaatcatggaagggtaa |
2140334 |
T |
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