View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16975_high_30 (Length: 330)
Name: NF16975_high_30
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 42759815 - 42759627
Alignment:
| Q |
1 |
cacatctatccatctgtaatcctctttttcccatgcatgttaacacaatcatgcaccttattccctctgtatatatatacatgcctgactgtttgcattt |
100 |
Q |
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| T |
42759815 |
cacatctatccatctgtaatcctctttttcccatgcatattaacacaatcatgcactttattccctctgtatatatatacatgcctgactgtttgcattt |
42759716 |
T |
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| Q |
101 |
tactcatctgtttctaaactttcctcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagttaatttgatggtcg |
189 |
Q |
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| T |
42759715 |
tactcatctgtttctaaactttcttcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagttaatttgatggtcg |
42759627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 249 - 320
Target Start/End: Complemental strand, 42759505 - 42759433
Alignment:
| Q |
249 |
gactatttctgtttaatt-aagtatccagtttcatttcaattccatttatatttttccctaagtaattctctg |
320 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42759505 |
gactatttctgtttaatttaagtatctagtttcatttcaattccatttatatttttccctaagtaattctctg |
42759433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 1402033 - 1402208
Alignment:
| Q |
1 |
cacatctatccatctgtaatcctctttttcccatgcatgttaacacaatcatgcaccttattccctctgtatatatatacatgcctgactgtttgcattt |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||| |
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| T |
1402033 |
cacatctatccatatgtaatcctctttttcccatgcatattaacacaatcatgcaccttattccctctgtatatatacacatgcctgactgtttccgttt |
1402132 |
T |
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| Q |
101 |
tactcatctgtttctaaactttcctcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagtt |
176 |
Q |
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| T |
1402133 |
tactcatctgtttctaaactttcttcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagtt |
1402208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 249 - 320
Target Start/End: Original strand, 1402329 - 1402400
Alignment:
| Q |
249 |
gactatttctgtttaattaagtatccagtttcatttcaattccatttatatttttccctaagtaattctctg |
320 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1402329 |
gactatatctgtttaattaagtatccagtttcatttcaattccatttatattttgccctaagtaattctctg |
1402400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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