View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16975_high_39 (Length: 265)

Name: NF16975_high_39
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16975_high_39
NF16975_high_39
[»] chr4 (2 HSPs)
chr4 (96-234)||(7285528-7285665)
chr4 (1-72)||(7285470-7285541)
[»] chr8 (1 HSPs)
chr8 (76-110)||(306412-306446)
[»] chr7 (1 HSPs)
chr7 (76-110)||(22348261-22348295)
[»] chr5 (1 HSPs)
chr5 (76-110)||(6837589-6837623)
[»] chr3 (1 HSPs)
chr3 (76-110)||(22598821-22598855)
[»] chr1 (2 HSPs)
chr1 (77-110)||(16001187-16001220)
chr1 (1-53)||(16000121-16000172)


Alignment Details
Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 96 - 234
Target Start/End: Original strand, 7285528 - 7285665
Alignment:
Q  96 tttgacttgtttctcttttgnnnnnnncaatgaattttagaaattggacaagtcttaattggagcagaaactggtcatgttggtgttgcaccaacacccg 195  Q
    ||||||||||||||||||||       |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7285528 tttgacttgtttctcttttgtttttt-caataaattttagaaattggacaagtcttaattggagcagaacctggtcatgttggtgttgcaccaacacccg 7285626  T
Q  196 agtcttctgtttaattccatttattggtataaattacac 234  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  7285627 agtcttctatttaattccatttattggtataaattacac 7285665  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 7285470 - 7285541
Alignment:
Q  1 gataacatgtataaaaacacttttgtcttgacgtttccactaagtggaattcaatgaatttgacttgtttct 72  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7285470 gataacgtgtataaaaacacttttgtcttgacgtttccactaagtggaattcaatgagtttgacttgtttct 7285541  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 306446 - 306412
Alignment:
Q  76 tatttgatattgcttaattatttgacttgtttctc 110  Q
    |||||||||||||||||||||||||||||||||||    
T  306446 tatttgatattgcttaattatttgacttgtttctc 306412  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 110
Target Start/End: Original strand, 22348261 - 22348295
Alignment:
Q  76 tatttgatattgcttaattatttgacttgtttctc 110  Q
    |||||||||||||||||||||||||||||||||||    
T  22348261 tatttgatattgcttaattatttgacttgtttctc 22348295  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 6837623 - 6837589
Alignment:
Q  76 tatttgatattgcttaattatttgacttgtttctc 110  Q
    |||||||||||||||||||||||||||||||||||    
T  6837623 tatttgatattgcttaattatttgacttgtttctc 6837589  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 110
Target Start/End: Original strand, 22598821 - 22598855
Alignment:
Q  76 tatttgatattgcttaattatttgacttgtttctc 110  Q
    |||||||||||||||||||||||||||||||||||    
T  22598821 tatttgatattgcttaattatttgacttgtttctc 22598855  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 16001187 - 16001220
Alignment:
Q  77 atttgatattgcttaattatttgacttgtttctc 110  Q
    ||||||||||||||||||||||||||||||||||    
T  16001187 atttgatattgcttaattatttgacttgtttctc 16001220  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 16000121 - 16000172
Alignment:
Q  1 gataacatgtataaaaacacttttgtcttgacgtttccactaagtggaattca 53  Q
    ||||||||||| |||||||  ||||||||||||||||||||| ||||||||||    
T  16000121 gataacatgta-aaaaacatgtttgtcttgacgtttccactaggtggaattca 16000172  T

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