View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16975_high_42 (Length: 250)
Name: NF16975_high_42
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_high_42 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 16873800 - 16874044
Alignment:
| Q |
1 |
ttcaaagactatgtatgcactaaggataactagaatataattaagagttgttagagaagttattt----gattagtttgttaggagattgctaggttctg |
96 |
Q |
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| T |
16873800 |
ttcaaagactatgtatgcactaaggataattagaatataattaagagtttttagaggagttacttagttgattagtttgttaggtgattgataggttctg |
16873899 |
T |
|
| Q |
97 |
ttgttattttgtttattctcgacaagtatttgaataacgcttgaggggaggggataattttgattaaacgcgttttgtgactgattaatacatattttgc |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16873900 |
ttgttattttgtttattctcgacaagtatttgaataacgcttgaggggaggggataattttgattaaacgagttttgtgactgattaatacatattttgc |
16873999 |
T |
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| Q |
197 |
gatcttgattaatacatattttctgttttctttcccttttcatct |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16874000 |
gatcttgattaatacatattttctgttttctttcccttttcatct |
16874044 |
T |
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