View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16975_high_45 (Length: 249)

Name: NF16975_high_45
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16975_high_45
NF16975_high_45
[»] chr1 (2 HSPs)
chr1 (1-132)||(38821269-38821401)
chr1 (142-196)||(1176839-1176893)
[»] chr7 (2 HSPs)
chr7 (140-191)||(30857906-30857957)
chr7 (140-196)||(9412024-9412080)
[»] chr5 (1 HSPs)
chr5 (140-191)||(5187832-5187883)
[»] chr4 (4 HSPs)
chr4 (140-191)||(22681881-22681932)
chr4 (140-191)||(24775785-24775836)
chr4 (140-196)||(16555516-16555572)
chr4 (140-180)||(23433498-23433538)
[»] chr3 (1 HSPs)
chr3 (140-193)||(47665912-47665965)
[»] chr8 (4 HSPs)
chr8 (140-196)||(12281125-12281181)
chr8 (140-196)||(12281423-12281479)
chr8 (140-196)||(15156182-15156238)
chr8 (140-180)||(23123339-23123379)
[»] chr2 (1 HSPs)
chr2 (140-196)||(17346032-17346087)


Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 38821401 - 38821269
Alignment:
Q  1 cgactgctggatagtgaacaccatcatactaatacctaataaccacccggtaaccaagagaagatgttgcaatatctgttcagtatttgatcaagacatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  38821401 cgactgctggatagtgaacaccatcatactaatacctaataaccacccggtaaccaagagaagatgttgcaatatctgttcaatatttgatcaagagatt 38821302  T
Q  101 taatttcagtaatccaact-aagtgtttaatta 132  Q
    ||||||||||||||||||| |||||||||||||    
T  38821301 taatttcagtaatccaactaaagtgtttaatta 38821269  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 1176839 - 1176893
Alignment:
Q  142 ttaattgaactttttcctcttatcttttgtcaattgtgcaatattgcacctcctc 196  Q
    ||||||| |||||| || | |||||||||||||||||||||| ||||||| ||||    
T  1176839 ttaattgcacttttaccccctatcttttgtcaattgtgcaattttgcaccccctc 1176893  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 30857957 - 30857906
Alignment:
Q  140 gcttaattgaactttttcctcttatcttttgtcaattgtgcaatattgcacc 191  Q
    ||||||||| ||||||  |||||||||||||||||||||||||| |||||||    
T  30857957 gcttaattgcacttttgtctcttatcttttgtcaattgtgcaattttgcacc 30857906  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 9412024 - 9412080
Alignment:
Q  140 gcttaattgaactttttcctcttatcttttgtcaattgtgcaatattgcacctcctc 196  Q
    ||||||||| |||||| || |||||||||||| |||||||| || ||||||| ||||    
T  9412024 gcttaattgcacttttcccccttatcttttgttaattgtgcgattttgcaccccctc 9412080  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 5187883 - 5187832
Alignment:
Q  140 gcttaattgaactttttcctcttatcttttgtcaattgtgcaatattgcacc 191  Q
    ||||||||| |||||| || |||||||||||| ||||||||||| |||||||    
T  5187883 gcttaattgcacttttgccccttatcttttgttaattgtgcaattttgcacc 5187832  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 22681932 - 22681881
Alignment:
Q  140 gcttaattgaactttttcctcttatcttttgtcaattgtgcaatattgcacc 191  Q
    ||||||||| |||||| |||| |||||||||| ||||||||||| |||||||    
T  22681932 gcttaattgcacttttccctcctatcttttgttaattgtgcaattttgcacc 22681881  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 24775836 - 24775785
Alignment:
Q  140 gcttaattgaactttttcctcttatcttttgtcaattgtgcaatattgcacc 191  Q
    ||||||||| |||||| |||| ||||||||||||||||||| || |||||||    
T  24775836 gcttaattgcacttttccctcctatcttttgtcaattgtgcgattttgcacc 24775785  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 16555516 - 16555572
Alignment:
Q  140 gcttaattgaactttttcctcttatcttttgtcaattgtgcaatattgcacctcctc 196  Q
    ||||||||| |||||| || |||||||||||| |||||||| || ||||||| ||||    
T  16555516 gcttaattgcacttttcccccttatcttttgttaattgtgcgattttgcaccccctc 16555572  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 23433538 - 23433498
Alignment:
Q  140 gcttaattgaactttttcctcttatcttttgtcaattgtgc 180  Q
    ||||||||| |||| | ||||||||||||||||||||||||    
T  23433538 gcttaattgcacttctgcctcttatcttttgtcaattgtgc 23433498  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 47665912 - 47665965
Alignment:
Q  140 gcttaattgaactttttcctcttatcttttgtcaattgtgcaatattgcacctc 193  Q
    ||||||||| ||||||||| |||||  |||||||||||||| || |||||||||    
T  47665912 gcttaattgcactttttccccttatagtttgtcaattgtgcgattttgcacctc 47665965  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 12281125 - 12281181
Alignment:
Q  140 gcttaattgaactttttcctcttatcttttgtcaattgtgcaatattgcacctcctc 196  Q
    ||||||||| |||||| || | ||||||||| ||||||||| || ||||||||||||    
T  12281125 gcttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacctcctc 12281181  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 12281479 - 12281423
Alignment:
Q  140 gcttaattgaactttttcctcttatcttttgtcaattgtgcaatattgcacctcctc 196  Q
    ||||||||| |||||| || |||||||||||| |||||||| || ||||||| ||||    
T  12281479 gcttaattgcacttttcccccttatcttttgttaattgtgcgattttgcaccccctc 12281423  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 15156238 - 15156182
Alignment:
Q  140 gcttaattgaactttttcctcttatcttttgtcaattgtgcaatattgcacctcctc 196  Q
    ||||||||| |||||| || | ||||||||||||||||||| || ||||||| ||||    
T  15156238 gcttaattgcacttttcccccctatcttttgtcaattgtgcgattttgcaccccctc 15156182  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 23123339 - 23123379
Alignment:
Q  140 gcttaattgaactttttcctcttatcttttgtcaattgtgc 180  Q
    ||||||||| |||||| |||| |||||||||||||||||||    
T  23123339 gcttaattgcacttttccctcctatcttttgtcaattgtgc 23123379  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 17346087 - 17346032
Alignment:
Q  140 gcttaattgaactttttcctcttatcttttgtcaattgtgcaatattgcacctcctc 196  Q
    ||||||||| |||||||||| ||||||||||  |||||||| || ||||||||||||    
T  17346087 gcttaattgcactttttcct-ttatcttttgctaattgtgcgattttgcacctcctc 17346032  T

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