View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16975_high_5 (Length: 526)

Name: NF16975_high_5
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16975_high_5
NF16975_high_5
[»] chr5 (5 HSPs)
chr5 (12-507)||(29712302-29712797)
chr5 (202-399)||(29696064-29696261)
chr5 (125-339)||(29688023-29688240)
chr5 (323-392)||(42562478-42562547)
chr5 (438-504)||(29687804-29687870)
[»] chr3 (1 HSPs)
chr3 (223-398)||(47451954-47452129)
[»] chr1 (3 HSPs)
chr1 (131-166)||(24340475-24340510)
chr1 (131-166)||(24352840-24352875)
chr1 (223-265)||(24310163-24310205)
[»] chr4 (6 HSPs)
chr4 (360-397)||(7771261-7771298)
chr4 (360-397)||(7904890-7904927)
chr4 (360-392)||(7774010-7774042)
chr4 (360-392)||(7789951-7789983)
chr4 (126-166)||(48852757-48852797)
chr4 (309-397)||(48875700-48875788)


Alignment Details
Target: chr5 (Bit Score: 484; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 12 - 507
Target Start/End: Original strand, 29712302 - 29712797
Alignment:
Q  12 atcatcacaaagagccaaccagtgaatagccccgtttaagaagtgaatagccccatttaagaacggctctactttggaattttcacgggccaggcaataa 111  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712302 atcataacaaagagccaaccagtgaatagccccatttaagaagtgaatagccccatttaagaacggctctactttggaattttcacgggccaggcaataa 29712401  T
Q  112 gagaaataattatcaccctcaatttcgttccacgcatcagctctcaatgagaaaagccctaagcgagttaacttatcataagcattgggatcatatgaca 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712402 gagaaataattatcaccctcaatttcgttccacgcatcagctctcaatgagaaaagccctaagcgagttaacttatcataagcattgggatcatatgaca 29712501  T
Q  212 tggaaagcacgaagtaatcatcccttgactcgtcatacccaaaaccatataaatgatatgcatctaaattgcaatcaataagagagtttggtatatattt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29712502 tggaaagcacgaagtaatcatcccttgactcgtcatacccaaaaccatataaatgatatgcatctaaattgcaatcaataagagaatttggtatatattt 29712601  T
Q  312 gtgaactccagtggatggattccatagacagagacatgaaccacaactcaaaagtataaaccctctacacgaacctttaatatcaagttgtgtaaaagac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712602 gtgaactccagtggatggattccatagacagagacatgaaccacaactcaaaagtataaaccctctacacgaacctttaatatcaagttgtgtaaaagac 29712701  T
Q  412 tgtggaagcaaaaaattaatattcaatgaataggaagcactatcatcgtagagtgatgtttccaaatcaatagatagagattccagatttggagtt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712702 tgtggaagcaaaaaattaatattcaatgaataggaagcactatcatcgtagagtgatgtttccaaatcaatagatagagattccagatttggagtt 29712797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 202 - 399
Target Start/End: Complemental strand, 29696261 - 29696064
Alignment:
Q  202 tcatatgacatggaaagcacgaagtaatcatcccttgactcgtcatacccaaaaccatataaatgatatgcatctaaattgcaatcaataagagagtttg 301  Q
    ||||| ||||| |||| ||| |||||||||||  ||||||||||||||||||||||||| |||| || |||||||  |||| |||||||   ||     |    
T  29696261 tcataggacattgaaatcaccaagtaatcatctgttgactcgtcatacccaaaaccatagaaataatttgcatctggattggaatcaattgtagtaaaag 29696162  T
Q  302 gtatatatttgtgaactccagtggatggattccatagacagagacatgaaccacaactcaaaagtataaaccctctacacgaacctttaatatcaagt 399  Q
    ||||   |||||||| ||| |||||||||||||||| |||||| | |||   |||  ||||||||||||| ||||||||||||||||||| |||||||    
T  29696161 gtattcgtttgtgaaatccggtggatggattccatatacagaggcttgagtaacagttcaaaagtataaagcctctacacgaacctttaaaatcaagt 29696064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 125 - 339
Target Start/End: Complemental strand, 29688240 - 29688023
Alignment:
Q  125 caccctcaatttcgttccacgcatcagctctcaatgagaaaagccctaagcgagttaacttatcataagcattgggatcatatgacatggaaagcacgaa 224  Q
    ||||||| ||||| ||||||| || |||||| |||||||||||||| ||| ||| ||||  | ||   ||| | ||||||||  |||| ||||| || |     
T  29688240 caccctccatttccttccacgtattagctcttaatgagaaaagccccaagtgagataacaaaccacgtgcactcggatcatagcacattgaaagaaccag 29688141  T
Q  225 gtaatcatcccttgactcgtcatacccaaaaccatataaatgatatgcatctaaattgcaatcaataagag-agt--ttggtatatatttgtgaactcca 321  Q
    |||||||||  | ||||| ||||||||||||||||| ||||  | ||| ||||||||| ||||||||| || |||    ||||| | | ||||||||||     
T  29688140 gtaatcatcagtagactcatcatacccaaaaccatagaaatactttgcttctaaattggaatcaataacagtagtaaagggtatttgtctgtgaactccg 29688041  T
Q  322 gtggatggattccataga 339  Q
    ||||||||||||||||||    
T  29688040 gtggatggattccataga 29688023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 392
Target Start/End: Original strand, 42562478 - 42562547
Alignment:
Q  323 tggatggattccatagacagagacatgaaccacaactcaaaagtataaaccctctacacgaacctttaat 392  Q
    ||||||||||||||||  |||  |||| |||||||  |||||||||||||||||||||||||||||||||    
T  42562478 tggatggattccataggtagaagcatgcaccacaatgcaaaagtataaaccctctacacgaacctttaat 42562547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 438 - 504
Target Start/End: Complemental strand, 29687870 - 29687804
Alignment:
Q  438 tgaataggaagcactatcatcgtagagtgatgtttccaaatcaatagatagagattccagatttgga 504  Q
    |||||| ||||||||||||||||  || |||||||| ||||| |||||||||||||| |||| ||||    
T  29687870 tgaataagaagcactatcatcgtgaagcgatgtttcaaaatctatagatagagattcaagatctgga 29687804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 223 - 398
Target Start/End: Original strand, 47451954 - 47452129
Alignment:
Q  223 aagtaatcatcccttgactcgtcatacccaaaaccatataaatgatatgcatctaaattgcaatcaataagagagtttggtatatatttgtgaactccag 322  Q
    |||||||||||  || |||||||||||||||| | ||| |||| || |||||||| |||| || ||| | |||     ||||| | ||||||||||||||    
T  47451954 aagtaatcatctgttaactcgtcatacccaaaccaataaaaataatttgcatctacattggaaccaaaaggaggcaaaggtatttgtttgtgaactccag 47452053  T
Q  323 tggatggattccatagacagagacatgaaccacaactcaaaagtataaaccctctacacgaacctttaatatcaag 398  Q
    |||||||||||||||   |||    ||||  |||||| |||||||||||||||||||| ||||||||||| |||||    
T  47452054 tggatggattccatatgtagatgtttgaagaacaacttaaaagtataaaccctctacatgaacctttaatttcaag 47452129  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 166
Target Start/End: Complemental strand, 24340510 - 24340475
Alignment:
Q  131 caatttcgttccacgcatcagctctcaatgagaaaa 166  Q
    |||||||||||||||||| |||||||||||||||||    
T  24340510 caatttcgttccacgcattagctctcaatgagaaaa 24340475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 166
Target Start/End: Complemental strand, 24352875 - 24352840
Alignment:
Q  131 caatttcgttccacgcatcagctctcaatgagaaaa 166  Q
    |||||||||||||||||| |||||||||||||||||    
T  24352875 caatttcgttccacgcattagctctcaatgagaaaa 24352840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 265
Target Start/End: Complemental strand, 24310205 - 24310163
Alignment:
Q  223 aagtaatcatcccttgactcgtcatacccaaaaccatataaat 265  Q
    ||||||||||| |||||||||||||| ||||||||||| ||||    
T  24310205 aagtaatcatctcttgactcgtcataaccaaaaccatagaaat 24310163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 397
Target Start/End: Complemental strand, 7771298 - 7771261
Alignment:
Q  360 caaaagtataaaccctctacacgaacctttaatatcaa 397  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  7771298 caaaagtataaaccctctacacgaacctctaatttcaa 7771261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 397
Target Start/End: Complemental strand, 7904927 - 7904890
Alignment:
Q  360 caaaagtataaaccctctacacgaacctttaatatcaa 397  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  7904927 caaaagtataaaccctctacacgaacctctaatttcaa 7904890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 392
Target Start/End: Original strand, 7774010 - 7774042
Alignment:
Q  360 caaaagtataaaccctctacacgaacctttaat 392  Q
    |||||||||||||||||||||||||||| ||||    
T  7774010 caaaagtataaaccctctacacgaacctctaat 7774042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 392
Target Start/End: Complemental strand, 7789983 - 7789951
Alignment:
Q  360 caaaagtataaaccctctacacgaacctttaat 392  Q
    |||||||||||||||||||||||||||| ||||    
T  7789983 caaaagtataaaccctctacacgaacctctaat 7789951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 48852797 - 48852757
Alignment:
Q  126 accctcaatttcgttccacgcatcagctctcaatgagaaaa 166  Q
    |||||||||||| ||||| |||| |||||||||||||||||    
T  48852797 accctcaatttctttccatgcattagctctcaatgagaaaa 48852757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 397
Target Start/End: Complemental strand, 48875788 - 48875700
Alignment:
Q  309 tttgtgaactccagtggatggattccatagacagagacatgaaccacaactcaaaagtataaaccctctacacgaacctttaatatcaa 397  Q
    |||||||| ||| |||||||||||||||||  |||| | ||||  ||||  ||| |||||||| ||||| || ||||||||||| ||||    
T  48875788 tttgtgaaatccggtggatggattccataggtagaggcttgaaaaacaatgcaacagtataaagcctctgcaagaacctttaatttcaa 48875700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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