View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16975_high_52 (Length: 241)

Name: NF16975_high_52
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16975_high_52
NF16975_high_52
[»] chr7 (12 HSPs)
chr7 (1-231)||(31691097-31691315)
chr7 (14-46)||(22759064-22759096)
chr7 (14-46)||(27708934-27708966)
chr7 (9-44)||(25507241-25507276)
chr7 (51-90)||(42656459-42656498)
chr7 (16-46)||(28702639-28702669)
chr7 (57-90)||(2999141-2999174)
chr7 (51-88)||(28178913-28178950)
chr7 (36-90)||(12110292-12110343)
chr7 (18-46)||(31832193-31832221)
chr7 (58-90)||(39591554-39591586)
chr7 (18-46)||(39630264-39630292)
[»] chr2 (10 HSPs)
chr2 (48-89)||(33197327-33197368)
chr2 (10-46)||(6772695-6772731)
chr2 (51-90)||(17952788-17952827)
chr2 (51-90)||(31461382-31461421)
chr2 (51-90)||(32098395-32098434)
chr2 (43-90)||(40837515-40837562)
chr2 (10-44)||(6768583-6768617)
chr2 (16-45)||(10285758-10285787)
chr2 (58-90)||(29633023-29633055)
chr2 (58-90)||(33576681-33576713)
[»] chr8 (13 HSPs)
chr8 (10-46)||(31167861-31167897)
chr8 (14-90)||(12224986-12225059)
chr8 (16-90)||(26820112-26820182)
chr8 (51-90)||(14482146-14482185)
chr8 (51-90)||(31915356-31915395)
chr8 (51-90)||(39392748-39392787)
chr8 (58-92)||(29699205-29699239)
chr8 (15-44)||(12291784-12291813)
chr8 (10-47)||(35565183-35565220)
chr8 (58-90)||(8799356-8799388)
chr8 (58-90)||(11119086-11119118)
chr8 (58-90)||(40728505-40728537)
chr8 (52-92)||(44348432-44348472)
[»] chr1 (12 HSPs)
chr1 (10-46)||(6933117-6933153)
chr1 (57-90)||(39777613-39777646)
chr1 (15-90)||(14737792-14737872)
chr1 (14-46)||(32555703-32555735)
chr1 (15-46)||(48146173-48146204)
chr1 (48-90)||(46499941-46499983)
chr1 (51-89)||(50319236-50319274)
chr1 (14-47)||(4019748-4019781)
chr1 (58-90)||(15360845-15360877)
chr1 (58-90)||(36641826-36641858)
chr1 (14-46)||(41638453-41638485)
chr1 (58-90)||(49517021-49517053)
[»] chr5 (16 HSPs)
chr5 (57-90)||(10280663-10280696)
chr5 (14-46)||(30845201-30845233)
chr5 (51-90)||(7096214-7096253)
chr5 (15-46)||(14257346-14257377)
chr5 (51-90)||(37063161-37063200)
chr5 (58-131)||(912696-912768)
chr5 (57-90)||(10303751-10303784)
chr5 (57-90)||(14295456-14295489)
chr5 (57-90)||(28586853-28586886)
chr5 (13-46)||(35055091-35055124)
chr5 (13-46)||(35071833-35071866)
chr5 (57-90)||(35095870-35095903)
chr5 (17-46)||(36638644-36638673)
chr5 (58-90)||(29117017-29117049)
chr5 (57-89)||(29590828-29590860)
chr5 (58-90)||(35135749-35135781)
[»] chr3 (10 HSPs)
chr3 (13-46)||(4534499-4534532)
chr3 (15-90)||(20192693-20192765)
chr3 (50-90)||(49587003-49587043)
chr3 (51-90)||(1395615-1395654)
chr3 (15-46)||(20874458-20874489)
chr3 (51-89)||(905058-905096)
chr3 (17-46)||(8933670-8933699)
chr3 (58-90)||(26990685-26990717)
chr3 (14-46)||(53892009-53892041)
chr3 (58-90)||(54775079-54775111)
[»] scaffold0590 (1 HSPs)
scaffold0590 (51-90)||(1161-1200)
[»] scaffold0275 (1 HSPs)
scaffold0275 (51-90)||(2775-2814)
[»] chr4 (13 HSPs)
chr4 (51-86)||(30338683-30338718)
chr4 (51-90)||(51044546-51044585)
chr4 (12-46)||(7730508-7730542)
chr4 (59-89)||(9319283-9319313)
chr4 (52-90)||(10192229-10192267)
chr4 (57-90)||(4071832-4071865)
chr4 (57-90)||(20936089-20936122)
chr4 (13-46)||(24068801-24068834)
chr4 (8-45)||(34621813-34621850)
chr4 (17-46)||(41162211-41162240)
chr4 (36-86)||(6364081-6364128)
chr4 (58-90)||(19422369-19422401)
chr4 (15-43)||(52645572-52645600)
[»] scaffold0286 (1 HSPs)
scaffold0286 (6-44)||(16026-16064)
[»] chr6 (8 HSPs)
chr6 (6-44)||(2161051-2161089)
chr6 (6-40)||(33284129-33284163)
chr6 (48-89)||(281936-281977)
chr6 (17-46)||(2023787-2023816)
chr6 (57-90)||(30865432-30865465)
chr6 (10-42)||(2732376-2732408)
chr6 (58-90)||(5328925-5328957)
chr6 (58-90)||(24836286-24836318)
[»] scaffold0024 (1 HSPs)
scaffold0024 (14-46)||(23806-23838)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 31691315 - 31691097
Alignment:
Q  1 atattagatgactctgtttggataaacaacttaattaagcacttatgatctataacctatttctataacaaaagatagaataaagtcaaaattcgattcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||            ||||||||||||||||    
T  31691315 atattagatgactctgtttggataaacaacttaattaagcacttatgatctataacctatttctagaacaaa------------gtcaaaattcgattcc 31691228  T
Q  101 acatgagctataagttgtttttataatctattctagaaagcttgtggnnnnnnntctgaacttaccgctgagaaatccgcctcgaagtctatctgagttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  31691227 acatgagctataagttgtttttataatctattctagaaagcttgtggaaaaaaatctgaacttaccgctgagaaatccgcctcgaagtctatctgagttt 31691128  T
Q  201 tcttcaatgaagaactatcagcagtcctatg 231  Q
    |||||||||||||||||||||||||||||||    
T  31691127 tcttcaatgaagaactatcagcagtcctatg 31691097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 22759064 - 22759096
Alignment:
Q  14 ctgtttggataaacaacttaattaagcacttat 46  Q
    |||||||||||||||||||||||||||||||||    
T  22759064 ctgtttggataaacaacttaattaagcacttat 22759096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 27708966 - 27708934
Alignment:
Q  14 ctgtttggataaacaacttaattaagcacttat 46  Q
    |||||||||||||||||||||||||||||||||    
T  27708966 ctgtttggataaacaacttaattaagcacttat 27708934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 25507241 - 25507276
Alignment:
Q  9 tgactctgtttggataaacaacttaattaagcactt 44  Q
    |||| |||||||||||||||||||||||||||||||    
T  25507241 tgaccctgtttggataaacaacttaattaagcactt 25507276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 42656459 - 42656498
Alignment:
Q  51 tataacctatttctataacaaaagatagaataaagtcaaa 90  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  42656459 tataagctatttctataacaaaagataaaataaagtcaaa 42656498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 28702639 - 28702669
Alignment:
Q  16 gtttggataaacaacttaattaagcacttat 46  Q
    |||||||||||||||||||||||||||||||    
T  28702639 gtttggataaacaacttaattaagcacttat 28702669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 2999141 - 2999174
Alignment:
Q  57 ctatttctataacaaaagatagaataaagtcaaa 90  Q
    ||||||||||||||||||||| ||||||||||||    
T  2999141 ctatttctataacaaaagataaaataaagtcaaa 2999174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 28178913 - 28178950
Alignment:
Q  51 tataacctatttctataacaaaagatagaataaagtca 88  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  28178913 tataagctatttctataacaaaagataaaataaagtca 28178950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 12110292 - 12110343
Alignment:
Q  36 taagcacttatgatctataacctatttctataacaaaagatagaataaagtcaaa 90  Q
    |||||||||||||   ||||||||||||||| ||| |||||| ||||||||||||    
T  12110292 taagcacttatga---ataacctatttctattacacaagataaaataaagtcaaa 12110343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 31832193 - 31832221
Alignment:
Q  18 ttggataaacaacttaattaagcacttat 46  Q
    |||||||||||||||||||||||||||||    
T  31832193 ttggataaacaacttaattaagcacttat 31832221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 39591586 - 39591554
Alignment:
Q  58 tatttctataacaaaagatagaataaagtcaaa 90  Q
    |||||||||||||||||||| ||||||||||||    
T  39591586 tatttctataacaaaagataaaataaagtcaaa 39591554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 39630264 - 39630292
Alignment:
Q  18 ttggataaacaacttaattaagcacttat 46  Q
    |||||||||||||||||||||||||||||    
T  39630264 ttggataaacaacttaattaagcacttat 39630292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 33197368 - 33197327
Alignment:
Q  48 atctataacctatttctataacaaaagatagaataaagtcaa 89  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  33197368 atctataagctatttctataacaaaagatagaataaagtcaa 33197327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 6772731 - 6772695
Alignment:
Q  10 gactctgtttggataaacaacttaattaagcacttat 46  Q
    |||||||||||||||||||||||||||||||||||||    
T  6772731 gactctgtttggataaacaacttaattaagcacttat 6772695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 17952827 - 17952788
Alignment:
Q  51 tataacctatttctataacaaaagatagaataaagtcaaa 90  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  17952827 tataagctatttctataacaaaagataaaataaagtcaaa 17952788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 31461382 - 31461421
Alignment:
Q  51 tataacctatttctataacaaaagatagaataaagtcaaa 90  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  31461382 tataagctatttctataacaaaagataaaataaagtcaaa 31461421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 32098434 - 32098395
Alignment:
Q  51 tataacctatttctataacaaaagatagaataaagtcaaa 90  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  32098434 tataagctatttctataacaaaagataaaataaagtcaaa 32098395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 40837562 - 40837515
Alignment:
Q  43 ttatgatctataacctatttctataacaaaagatagaataaagtcaaa 90  Q
    ||||||| ||||| ||||||||||||||||||||| | ||||||||||    
T  40837562 ttatgatgtataagctatttctataacaaaagataaattaaagtcaaa 40837515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 6768617 - 6768583
Alignment:
Q  10 gactctgtttggataaacaacttaattaagcactt 44  Q
    ||||||||||||| |||||||||||||||||||||    
T  6768617 gactctgtttggacaaacaacttaattaagcactt 6768583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 10285758 - 10285787
Alignment:
Q  16 gtttggataaacaacttaattaagcactta 45  Q
    ||||||||||||||||||||||||||||||    
T  10285758 gtttggataaacaacttaattaagcactta 10285787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 29633023 - 29633055
Alignment:
Q  58 tatttctataacaaaagatagaataaagtcaaa 90  Q
    |||||||||||||||| ||||||||||||||||    
T  29633023 tatttctataacaaaaaatagaataaagtcaaa 29633055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 33576713 - 33576681
Alignment:
Q  58 tatttctataacaaaagatagaataaagtcaaa 90  Q
    |||||||||||||||||||| ||||||||||||    
T  33576713 tatttctataacaaaagatacaataaagtcaaa 33576681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 31167861 - 31167897
Alignment:
Q  10 gactctgtttggataaacaacttaattaagcacttat 46  Q
    |||||||||||||||||||||||||||||||||||||    
T  31167861 gactctgtttggataaacaacttaattaagcacttat 31167897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 12225059 - 12224986
Alignment:
Q  14 ctgtttggataaacaacttaattaagcacttatgatctataacctatttctataacaaaagatagaataaagtcaaa 90  Q
    ||||||||||||||||||||||||||  ||||||   |||||  ||||||||  |||||||||| ||||||||||||    
T  12225059 ctgtttggataaacaacttaattaagagcttatg---tataagttatttctaagacaaaagataaaataaagtcaaa 12224986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 26820112 - 26820182
Alignment:
Q  16 gtttggataaacaacttaattaagcacttatgatctataacctatttctataacaaaagatagaataaagtcaaa 90  Q
    |||||||||||||||| |||||||| ||||     |||||  |||||||||||||||||||| ||||||||||||    
T  26820112 gtttggataaacaactcaattaagcgcttag----tataagttatttctataacaaaagataaaataaagtcaaa 26820182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 14482146 - 14482185
Alignment:
Q  51 tataacctatttctataacaaaagatagaataaagtcaaa 90  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  14482146 tataaactatttctataacaaaagataaaataaagtcaaa 14482185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 31915395 - 31915356
Alignment:
Q  51 tataacctatttctataacaaaagatagaataaagtcaaa 90  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  31915395 tataagctatatctataacaaaagatagaataaagtcaaa 31915356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 39392787 - 39392748
Alignment:
Q  51 tataacctatttctataacaaaagatagaataaagtcaaa 90  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  39392787 tataaactatttctataacaaaagataaaataaagtcaaa 39392748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 92
Target Start/End: Original strand, 29699205 - 29699239
Alignment:
Q  58 tatttctataacaaaagatagaataaagtcaaaat 92  Q
    |||||||||||||||||||| ||||||||||||||    
T  29699205 tatttctataacaaaagataaaataaagtcaaaat 29699239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 12291813 - 12291784
Alignment:
Q  15 tgtttggataaacaacttaattaagcactt 44  Q
    ||||||||||||||||||||||||||||||    
T  12291813 tgtttggataaacaacttaattaagcactt 12291784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 35565183 - 35565220
Alignment:
Q  10 gactctgtttggataaacaacttaattaagcacttatg 47  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  35565183 gactctgtttggataaacaacttcattaagtacttatg 35565220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 8799356 - 8799388
Alignment:
Q  58 tatttctataacaaaagatagaataaagtcaaa 90  Q
    |||||||||||||||||||| ||||||||||||    
T  8799356 tatttctataacaaaagataaaataaagtcaaa 8799388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 11119118 - 11119086
Alignment:
Q  58 tatttctataacaaaagatagaataaagtcaaa 90  Q
    |||||||||||||||||||| ||||||||||||    
T  11119118 tatttctataacaaaagataaaataaagtcaaa 11119086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 40728537 - 40728505
Alignment:
Q  58 tatttctataacaaaagatagaataaagtcaaa 90  Q
    |||||||||||||||||||| ||||||||||||    
T  40728537 tatttctataacaaaagataaaataaagtcaaa 40728505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 44348432 - 44348472
Alignment:
Q  52 ataacctatttctataacaaaagatagaataaagtcaaaat 92  Q
    |||| ||||||||||||||||||||  ||||||||||||||    
T  44348432 ataagctatttctataacaaaagatgtaataaagtcaaaat 44348472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 6933153 - 6933117
Alignment:
Q  10 gactctgtttggataaacaacttaattaagcacttat 46  Q
    |||||||||||||||||||||||||||||||||||||    
T  6933153 gactctgtttggataaacaacttaattaagcacttat 6933117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 39777613 - 39777646
Alignment:
Q  57 ctatttctataacaaaagatagaataaagtcaaa 90  Q
    ||||||||||||||||||||||||||||||||||    
T  39777613 ctatttctataacaaaagatagaataaagtcaaa 39777646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 14737872 - 14737792
Alignment:
Q  15 tgtttggataaacaacttaattaagcacttatgatctat-----aacctatttctataacaaaagatagaataaagtcaaa 90  Q
    ||||||||||| || ||||||||||||||||| || |||     ||  |||||||||||||||||||| ||||||||||||    
T  14737872 tgtttggataagcagcttaattaagcacttatcatatatgtgctaagttatttctataacaaaagataaaataaagtcaaa 14737792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 32555703 - 32555735
Alignment:
Q  14 ctgtttggataaacaacttaattaagcacttat 46  Q
    |||||||||||||||||||||||||||||||||    
T  32555703 ctgtttggataaacaacttaattaagcacttat 32555735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 46
Target Start/End: Complemental strand, 48146204 - 48146173
Alignment:
Q  15 tgtttggataaacaacttaattaagcacttat 46  Q
    ||||||||||||||||||||||||||||||||    
T  48146204 tgtttggataaacaacttaattaagcacttat 48146173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 46499983 - 46499941
Alignment:
Q  48 atctataacctatttctataacaaaagatagaataaagtcaaa 90  Q
    |||||||| |||||||||||| |||||||| ||||||||||||    
T  46499983 atctataagctatttctataagaaaagataaaataaagtcaaa 46499941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 50319236 - 50319274
Alignment:
Q  51 tataacctatttctataacaaaagatagaataaagtcaa 89  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  50319236 tataagctatttctataacaaaagataaaataaagtcaa 50319274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 4019781 - 4019748
Alignment:
Q  14 ctgtttggataaacaacttaattaagcacttatg 47  Q
    ||||||||||||||||||||||| ||||||||||    
T  4019781 ctgtttggataaacaacttaatttagcacttatg 4019748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 15360845 - 15360877
Alignment:
Q  58 tatttctataacaaaagatagaataaagtcaaa 90  Q
    |||||||||||||||||||| ||||||||||||    
T  15360845 tatttctataacaaaagataaaataaagtcaaa 15360877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 36641826 - 36641858
Alignment:
Q  58 tatttctataacaaaagatagaataaagtcaaa 90  Q
    |||||||||||||||||||| ||||||||||||    
T  36641826 tatttctataacaaaagataaaataaagtcaaa 36641858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 41638485 - 41638453
Alignment:
Q  14 ctgtttggataaacaacttaattaagcacttat 46  Q
    ||||||||||||||||||| |||||||||||||    
T  41638485 ctgtttggataaacaacttgattaagcacttat 41638453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 49517021 - 49517053
Alignment:
Q  58 tatttctataacaaaagatagaataaagtcaaa 90  Q
    |||||||||||||||||||| ||||||||||||    
T  49517021 tatttctataacaaaagataaaataaagtcaaa 49517053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 10280696 - 10280663
Alignment:
Q  57 ctatttctataacaaaagatagaataaagtcaaa 90  Q
    ||||||||||||||||||||||||||||||||||    
T  10280696 ctatttctataacaaaagatagaataaagtcaaa 10280663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 30845201 - 30845233
Alignment:
Q  14 ctgtttggataaacaacttaattaagcacttat 46  Q
    |||||||||||||||||||||||||||||||||    
T  30845201 ctgtttggataaacaacttaattaagcacttat 30845233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 7096253 - 7096214
Alignment:
Q  51 tataacctatttctataacaaaagatagaataaagtcaaa 90  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  7096253 tataagctatttctataacaaaagataaaataaagtcaaa 7096214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 14257346 - 14257377
Alignment:
Q  15 tgtttggataaacaacttaattaagcacttat 46  Q
    ||||||||||||||||||||||||||||||||    
T  14257346 tgtttggataaacaacttaattaagcacttat 14257377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 37063200 - 37063161
Alignment:
Q  51 tataacctatttctataacaaaagatagaataaagtcaaa 90  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  37063200 tataaactatttctataacaaaagataaaataaagtcaaa 37063161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 912768 - 912696
Alignment:
Q  58 tatttctataacaaaagatagaataaagtcaaaattcgattccacatgagctataagttgtttttataatctat 131  Q
    ||||||||||||| || ||| ||||||||||||||| | || || || ||| ||||||||||||||||| ||||    
T  912768 tatttctataacacaatataaaataaagtcaaaatt-gttttcatataagcaataagttgtttttataaactat 912696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 10303751 - 10303784
Alignment:
Q  57 ctatttctataacaaaagatagaataaagtcaaa 90  Q
    ||||||||||||||||||||| ||||||||||||    
T  10303751 ctatttctataacaaaagataaaataaagtcaaa 10303784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 14295456 - 14295489
Alignment:
Q  57 ctatttctataacaaaagatagaataaagtcaaa 90  Q
    ||||||||||||||||||||| ||||||||||||    
T  14295456 ctatttctataacaaaagataaaataaagtcaaa 14295489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 28586886 - 28586853
Alignment:
Q  57 ctatttctataacaaaagatagaataaagtcaaa 90  Q
    ||||||||||||||||||||| ||||||||||||    
T  28586886 ctatttctataacaaaagataaaataaagtcaaa 28586853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 35055091 - 35055124
Alignment:
Q  13 tctgtttggataaacaacttaattaagcacttat 46  Q
    ||||||||| ||||||||||||||||||||||||    
T  35055091 tctgtttgggtaaacaacttaattaagcacttat 35055124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 35071833 - 35071866
Alignment:
Q  13 tctgtttggataaacaacttaattaagcacttat 46  Q
    ||||||||| ||||||||||||||||||||||||    
T  35071833 tctgtttgggtaaacaacttaattaagcacttat 35071866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 35095903 - 35095870
Alignment:
Q  57 ctatttctataacaaaagatagaataaagtcaaa 90  Q
    ||||||||||||||||||||| ||||||||||||    
T  35095903 ctatttctataacaaaagataaaataaagtcaaa 35095870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 36638644 - 36638673
Alignment:
Q  17 tttggataaacaacttaattaagcacttat 46  Q
    ||||||||||||||||||||||||||||||    
T  36638644 tttggataaacaacttaattaagcacttat 36638673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 29117049 - 29117017
Alignment:
Q  58 tatttctataacaaaagatagaataaagtcaaa 90  Q
    |||||||||||||||||||| ||||||||||||    
T  29117049 tatttctataacaaaagataaaataaagtcaaa 29117017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 29590860 - 29590828
Alignment:
Q  57 ctatttctataacaaaagatagaataaagtcaa 89  Q
    ||||||||||||||||||||| |||||||||||    
T  29590860 ctatttctataacaaaagataaaataaagtcaa 29590828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 35135781 - 35135749
Alignment:
Q  58 tatttctataacaaaagatagaataaagtcaaa 90  Q
    |||||||||||||||||||| ||||||||||||    
T  35135781 tatttctataacaaaagataaaataaagtcaaa 35135749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 4534532 - 4534499
Alignment:
Q  13 tctgtttggataaacaacttaattaagcacttat 46  Q
    ||||||||||||||||||||||||||||||||||    
T  4534532 tctgtttggataaacaacttaattaagcacttat 4534499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 20192765 - 20192693
Alignment:
Q  15 tgtttggataaacaacttaattaagcacttatgatctataacctatttctataacaaaagatagaataaagtcaaa 90  Q
    |||||||||||||| || |||||||  ||||||   ||||| |||||| |||||||||||||| ||||||||||||    
T  20192765 tgtttggataaacagctcaattaagtgcttatg---tataagctatttatataacaaaagataaaataaagtcaaa 20192693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 49587043 - 49587003
Alignment:
Q  50 ctataacctatttctataacaaaagatagaataaagtcaaa 90  Q
    |||||| ||||||||||||||||||||| ||||||||||||    
T  49587043 ctataagctatttctataacaaaagataaaataaagtcaaa 49587003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 1395615 - 1395654
Alignment:
Q  51 tataacctatttctataacaaaagatagaataaagtcaaa 90  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  1395615 tataagctatttctataacaaaagataaaataaagtcaaa 1395654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 46
Target Start/End: Complemental strand, 20874489 - 20874458
Alignment:
Q  15 tgtttggataaacaacttaattaagcacttat 46  Q
    ||||||||||||||||||||||||||||||||    
T  20874489 tgtttggataaacaacttaattaagcacttat 20874458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 905096 - 905058
Alignment:
Q  51 tataacctatttctataacaaaagatagaataaagtcaa 89  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  905096 tataagctatttctataacaaaagataaaataaagtcaa 905058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 8933670 - 8933699
Alignment:
Q  17 tttggataaacaacttaattaagcacttat 46  Q
    ||||||||||||||||||||||||||||||    
T  8933670 tttggataaacaacttaattaagcacttat 8933699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 26990685 - 26990717
Alignment:
Q  58 tatttctataacaaaagatagaataaagtcaaa 90  Q
    |||||||||||||||||||| ||||||||||||    
T  26990685 tatttctataacaaaagataaaataaagtcaaa 26990717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 53892041 - 53892009
Alignment:
Q  14 ctgtttggataaacaacttaattaagcacttat 46  Q
    ||||||||||||||| |||||||||||||||||    
T  53892041 ctgtttggataaacagcttaattaagcacttat 53892009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 54775079 - 54775111
Alignment:
Q  58 tatttctataacaaaagatagaataaagtcaaa 90  Q
    |||||||||||||||||||| ||||||||||||    
T  54775079 tatttctataacaaaagataaaataaagtcaaa 54775111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 1200 - 1161
Alignment:
Q  51 tataacctatttctataacaaaagatagaataaagtcaaa 90  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  1200 tataagctatttctataacaaaagataaaataaagtcaaa 1161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 2775 - 2814
Alignment:
Q  51 tataacctatttctataacaaaagatagaataaagtcaaa 90  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  2775 tataagctatttctataacaaaagataaaataaagtcaaa 2814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 30338718 - 30338683
Alignment:
Q  51 tataacctatttctataacaaaagatagaataaagt 86  Q
    ||||| ||||||||||||||||||||||||||||||    
T  30338718 tataaactatttctataacaaaagatagaataaagt 30338683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 51044585 - 51044546
Alignment:
Q  51 tataacctatttctataacaaaagatagaataaagtcaaa 90  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  51044585 tataagctatttctataacaaaagataaaataaagtcaaa 51044546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 7730508 - 7730542
Alignment:
Q  12 ctctgtttggataaacaacttaattaagcacttat 46  Q
    |||| ||||||||||||||||||||||||||||||    
T  7730508 ctctatttggataaacaacttaattaagcacttat 7730542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 89
Target Start/End: Complemental strand, 9319313 - 9319283
Alignment:
Q  59 atttctataacaaaagatagaataaagtcaa 89  Q
    |||||||||||||||||||||||||||||||    
T  9319313 atttctataacaaaagatagaataaagtcaa 9319283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 10192229 - 10192267
Alignment:
Q  52 ataacctatttctataacaaaagatagaataaagtcaaa 90  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  10192229 ataaactatttttataacaaaagatagaataaagtcaaa 10192267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 4071832 - 4071865
Alignment:
Q  57 ctatttctataacaaaagatagaataaagtcaaa 90  Q
    ||||||||||||||||||||| ||||||||||||    
T  4071832 ctatttctataacaaaagataaaataaagtcaaa 4071865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 20936122 - 20936089
Alignment:
Q  57 ctatttctataacaaaagatagaataaagtcaaa 90  Q
    ||||||||||||||||||||| ||||||||||||    
T  20936122 ctatttctataacaaaagataaaataaagtcaaa 20936089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 24068834 - 24068801
Alignment:
Q  13 tctgtttggataaacaacttaattaagcacttat 46  Q
    ||||||||||||| ||||||||||||||||||||    
T  24068834 tctgtttggataatcaacttaattaagcacttat 24068801  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 34621813 - 34621850
Alignment:
Q  8 atgactctgtttggataaacaacttaattaagcactta 45  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  34621813 atgactctgtttggataaacaacttaactaaacactta 34621850  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 41162240 - 41162211
Alignment:
Q  17 tttggataaacaacttaattaagcacttat 46  Q
    ||||||||||||||||||||||||||||||    
T  41162240 tttggataaacaacttaattaagcacttat 41162211  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 6364081 - 6364128
Alignment:
Q  36 taagcacttatgatctataacctatttctataacaaaagatagaataaagt 86  Q
    ||||||||||||   ||||| ||||||||||||||||||||| ||||||||    
T  6364081 taagcacttatg---tataagctatttctataacaaaagataaaataaagt 6364128  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 19422369 - 19422401
Alignment:
Q  58 tatttctataacaaaagatagaataaagtcaaa 90  Q
    |||||||||||||||||||| ||||||||||||    
T  19422369 tatttctataacaaaagatataataaagtcaaa 19422401  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 52645572 - 52645600
Alignment:
Q  15 tgtttggataaacaacttaattaagcact 43  Q
    |||||||||||||||||||||||||||||    
T  52645572 tgtttggataaacaacttaattaagcact 52645600  T

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Target: scaffold0286 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 16026 - 16064
Alignment:
Q  6 agatgactctgtttggataaacaacttaattaagcactt 44  Q
    |||||||| |||||||||||||||||||||| |||||||    
T  16026 agatgactgtgtttggataaacaacttaattcagcactt 16064  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 2161089 - 2161051
Alignment:
Q  6 agatgactctgtttggataaacaacttaattaagcactt 44  Q
    |||||||| |||||||||||||||||||||| |||||||    
T  2161089 agatgactgtgtttggataaacaacttaattcagcactt 2161051  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 33284129 - 33284163
Alignment:
Q  6 agatgactctgtttggataaacaacttaattaagc 40  Q
    |||||| ||||||||||||||||||||||||||||    
T  33284129 agatgattctgtttggataaacaacttaattaagc 33284163  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 281977 - 281936
Alignment:
Q  48 atctataacctatttctataacaaaagatagaataaagtcaa 89  Q
    |||||||| ||||| ||||||||||||||| |||||||||||    
T  281977 atctataagctattcctataacaaaagataaaataaagtcaa 281936  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 2023816 - 2023787
Alignment:
Q  17 tttggataaacaacttaattaagcacttat 46  Q
    ||||||||||||||||||||||||||||||    
T  2023816 tttggataaacaacttaattaagcacttat 2023787  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 30865432 - 30865465
Alignment:
Q  57 ctatttctataacaaaagatagaataaagtcaaa 90  Q
    ||||||||||||||||||||| ||||||||||||    
T  30865432 ctatttctataacaaaagataaaataaagtcaaa 30865465  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 2732408 - 2732376
Alignment:
Q  10 gactctgtttggataaacaacttaattaagcac 42  Q
    ||||||||||| |||||||||||||||||||||    
T  2732408 gactctgtttgaataaacaacttaattaagcac 2732376  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 5328925 - 5328957
Alignment:
Q  58 tatttctataacaaaagatagaataaagtcaaa 90  Q
    |||||||||||||||||||| ||||||||||||    
T  5328925 tatttctataacaaaagataaaataaagtcaaa 5328957  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 24836318 - 24836286
Alignment:
Q  58 tatttctataacaaaagatagaataaagtcaaa 90  Q
    |||||||||||||||||||| ||||||||||||    
T  24836318 tatttctataacaaaagataaaataaagtcaaa 24836286  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 23806 - 23838
Alignment:
Q  14 ctgtttggataaacaacttaattaagcacttat 46  Q
    ||||||||||||||||||||||||| |||||||    
T  23806 ctgtttggataaacaacttaattaaacacttat 23838  T

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