View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16975_high_54 (Length: 238)
Name: NF16975_high_54
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_high_54 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 37078793 - 37079000
Alignment:
| Q |
18 |
aataaatgatttaacatggtgcttgccaaacacaatattcaatacttggtttattgatcaactttacctttcatgtatttcatattcaaggtttttagct |
117 |
Q |
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| T |
37078793 |
aataaatgatttaacatggtgcttgccaaacacaatattcaatacttggtttattgatcaactttacctttcatgtatttcatattcaaggttgttagct |
37078892 |
T |
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| Q |
118 |
atagtgatgagggtttagagagtgcactgcacattgtgttctgtttcatgttgagaaaaagaaaaacacttaggatgcgtttgtttcatggatactaaac |
217 |
Q |
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| T |
37078893 |
atagtgatgagggtttagagagtgcactgcacattttgttctgtttcatgttgagaaaaagaaaaacacttaggatgcatttgtttcatggatactaaac |
37078992 |
T |
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| Q |
218 |
atattctt |
225 |
Q |
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| T |
37078993 |
atattctt |
37079000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 37064672 - 37064754
Alignment:
| Q |
18 |
aataaatgatttaacatggtgcttgccaaacacaatattcaatacttggtttattgatcaactttacctttcatgtatttcat |
100 |
Q |
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| T |
37064672 |
aataaatgatttaacatggtgcttgcctaactcaattttcaatacttcgtttaattatctacccaaccttttatgtatttcat |
37064754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 37068832 - 37068980
Alignment:
| Q |
18 |
aataaatgatttaacatggtgcttgccaaacacaatattcaatacttggtttattgatcaactttacctttcatgtatttcatattcaaggtttttagct |
117 |
Q |
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| T |
37068832 |
aataaatgattgaacatggtacctac-aaacaaaatattcaatacttaattcaatgatcaacccgaactttcatgtatttcatttg--aggttgttagct |
37068928 |
T |
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| Q |
118 |
atagtgatgagggtttagagagtgcactgcacattgtgttctgtttcatgttgagaaaa |
176 |
Q |
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| T |
37068929 |
atagtgatgaggatttagag-------tgcacattgtttactgtttcatgtcgagaaaa |
37068980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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