View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16975_high_55 (Length: 238)

Name: NF16975_high_55
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16975_high_55
NF16975_high_55
[»] chr1 (22 HSPs)
chr1 (17-235)||(30996588-30996805)
chr1 (15-134)||(47556343-47556461)
chr1 (185-238)||(29437827-29437880)
chr1 (190-238)||(49549017-49549065)
chr1 (183-234)||(52428897-52428948)
chr1 (174-237)||(15302718-15302781)
chr1 (185-235)||(4280102-4280152)
chr1 (185-235)||(46271326-46271376)
chr1 (185-238)||(17483744-17483797)
chr1 (190-235)||(36674274-36674318)
chr1 (190-238)||(48067868-48067916)
chr1 (204-238)||(42872307-42872341)
chr1 (22-76)||(47554457-47554511)
chr1 (204-238)||(51467445-51467479)
chr1 (204-237)||(3549062-3549095)
chr1 (185-238)||(9413298-9413351)
chr1 (190-238)||(6089751-6089799)
chr1 (166-238)||(8472041-8472113)
chr1 (170-238)||(21631080-21631148)
chr1 (190-238)||(32153767-32153815)
chr1 (190-238)||(34931095-34931143)
chr1 (204-236)||(38505829-38505861)
[»] chr7 (10 HSPs)
chr7 (185-238)||(9682613-9682666)
chr7 (185-235)||(35888323-35888373)
chr7 (185-238)||(44510316-44510369)
chr7 (190-238)||(8782186-8782234)
chr7 (185-236)||(30534716-30534767)
chr7 (190-237)||(49045094-49045141)
chr7 (204-238)||(32699677-32699711)
chr7 (190-238)||(33682730-33682778)
chr7 (185-236)||(2345518-2345569)
chr7 (190-236)||(3024600-3024646)
[»] chr5 (14 HSPs)
chr5 (181-238)||(13235949-13236006)
chr5 (185-238)||(24857567-24857620)
chr5 (185-235)||(39971025-39971075)
chr5 (185-237)||(21069648-21069700)
chr5 (185-238)||(20186512-20186565)
chr5 (185-238)||(31642198-31642251)
chr5 (190-238)||(16285163-16285211)
chr5 (185-235)||(11432320-11432371)
chr5 (204-235)||(16636977-16637008)
chr5 (190-236)||(35784892-35784938)
chr5 (185-238)||(7940463-7940516)
chr5 (174-235)||(25837008-25837069)
chr5 (190-238)||(32617749-32617796)
chr5 (185-237)||(39758903-39758955)
[»] chr4 (20 HSPs)
chr4 (185-238)||(13548991-13549044)
chr4 (170-236)||(35909637-35909703)
chr4 (165-238)||(39797424-39797498)
chr4 (171-236)||(6629448-6629512)
chr4 (190-233)||(23390326-23390369)
chr4 (185-235)||(18872728-18872778)
chr4 (203-237)||(29508834-29508868)
chr4 (172-238)||(7698441-7698508)
chr4 (174-237)||(30010824-30010887)
chr4 (185-236)||(35675895-35675946)
chr4 (204-238)||(7698405-7698439)
chr4 (185-238)||(5743632-5743685)
chr4 (185-238)||(20391411-20391463)
chr4 (185-238)||(29520137-29520190)
chr4 (185-238)||(30050057-30050110)
chr4 (136-177)||(53283863-53283904)
chr4 (190-238)||(1028534-1028582)
chr4 (204-236)||(37780188-37780220)
chr4 (190-238)||(41191601-41191649)
chr4 (190-238)||(49228691-49228739)
[»] chr3 (21 HSPs)
chr3 (185-236)||(36584721-36584772)
chr3 (185-236)||(17589851-17589902)
chr3 (138-177)||(52032092-52032131)
chr3 (169-235)||(12918814-12918880)
chr3 (185-235)||(32969201-32969251)
chr3 (185-238)||(15996746-15996799)
chr3 (185-238)||(20621657-20621710)
chr3 (185-238)||(45404386-45404439)
chr3 (185-238)||(45745789-45745842)
chr3 (185-233)||(28875229-28875277)
chr3 (185-237)||(42755352-42755404)
chr3 (190-237)||(45048996-45049043)
chr3 (185-236)||(48904238-48904289)
chr3 (208-238)||(31541061-31541091)
chr3 (185-238)||(10015762-10015815)
chr3 (190-235)||(20877649-20877694)
chr3 (204-237)||(42526599-42526632)
chr3 (185-238)||(49383355-49383407)
chr3 (208-237)||(52693662-52693691)
chr3 (190-238)||(31186774-31186822)
chr3 (166-238)||(47008475-47008547)
[»] chr2 (13 HSPs)
chr2 (174-237)||(36750858-36750921)
chr2 (190-236)||(30830317-30830363)
chr2 (132-177)||(2805980-2806025)
chr2 (185-237)||(3095310-3095362)
chr2 (190-238)||(9701086-9701134)
chr2 (174-238)||(34432173-34432237)
chr2 (190-237)||(2788311-2788358)
chr2 (185-236)||(30857949-30858000)
chr2 (185-238)||(12890181-12890234)
chr2 (185-238)||(40789061-40789114)
chr2 (185-233)||(41422523-41422571)
chr2 (185-233)||(41494600-41494648)
chr2 (204-238)||(32120974-32121008)
[»] chr8 (18 HSPs)
chr8 (168-238)||(35179594-35179664)
chr8 (185-238)||(36408426-36408479)
chr8 (168-236)||(26625787-26625855)
chr8 (204-238)||(5109911-5109945)
chr8 (204-238)||(23995607-23995641)
chr8 (185-237)||(26016580-26016632)
chr8 (190-238)||(39406575-39406623)
chr8 (192-238)||(16448726-16448771)
chr8 (185-235)||(43292972-43293022)
chr8 (172-237)||(17336417-17336481)
chr8 (185-238)||(23487075-23487128)
chr8 (204-237)||(28965534-28965567)
chr8 (185-238)||(32675730-32675783)
chr8 (190-235)||(36941285-36941330)
chr8 (185-238)||(42885065-42885118)
chr8 (190-238)||(32522816-32522864)
chr8 (185-236)||(36786478-36786530)
chr8 (204-236)||(41898471-41898503)
[»] chr6 (12 HSPs)
chr6 (185-238)||(13321299-13321352)
chr6 (190-238)||(22710282-22710330)
chr6 (190-237)||(4175258-4175305)
chr6 (190-236)||(28236176-28236222)
chr6 (204-238)||(28980829-28980863)
chr6 (204-237)||(6418626-6418659)
chr6 (185-238)||(9038653-9038706)
chr6 (204-236)||(22999020-22999052)
chr6 (204-236)||(23789352-23789384)
chr6 (204-238)||(31150219-31150253)
chr6 (185-238)||(31091456-31091509)
chr6 (204-236)||(8217694-8217726)
[»] scaffold0009 (1 HSPs)
scaffold0009 (190-238)||(246472-246520)
[»] scaffold0236 (1 HSPs)
scaffold0236 (204-238)||(17494-17528)
[»] scaffold0038 (1 HSPs)
scaffold0038 (190-236)||(36338-36384)
[»] scaffold0883 (1 HSPs)
scaffold0883 (190-238)||(1736-1784)
[»] scaffold0095 (1 HSPs)
scaffold0095 (190-238)||(45529-45577)
[»] scaffold0368 (1 HSPs)
scaffold0368 (204-238)||(8248-8282)
[»] scaffold0047 (1 HSPs)
scaffold0047 (185-238)||(61826-61877)
[»] scaffold0020 (1 HSPs)
scaffold0020 (185-237)||(164225-164277)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 30996588 - 30996805
Alignment:
Q  17 cactagtcttggtgcttgttttccgctttatatccccagaataatccttattcacattttattattttgcatttagctttccatcatgtgagctcccata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30996588 cactagtcttggtgcttgttttccgctttatatccccagaataatccttattcacattttattattttgcaattagctttccatcatgtgagctcccata 30996687  T
Q  117 caataatagaattttcatccaaaaaagtttgaacagtgaaattttgaataaaaatattactactttcatcccgaattataagacttctttgaaaaaataa 216  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||  |||||||||||||    
T  30996688 caataatagaattttcgtccaaaaaagtttgaacagtgaaattttgaataaaaatattac-acttccatcccgaattataagactcttttgaaaaaataa 30996786  T
Q  217 tttgtccctttttataaga 235  Q
    |||||||||||||||||||    
T  30996787 tttgtccctttttataaga 30996805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 47556343 - 47556461
Alignment:
Q  15 atcactagtcttggtgcttgttttccgctttatatccccagaataatccttattcacattttattattttgcatttagctttccatcatgtgagctccca 114  Q
    |||||||||||| |||||||| |||| |||||||||| || ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  47556343 atcactagtcttagtgcttgtattccactttatatccacacaataatccttatttacattttattattttgca-ttagctttccatcatgtgagctccca 47556441  T
Q  115 tacaataatagaattttcat 134  Q
    ||||| ||||||||||||||    
T  47556442 tacaacaatagaattttcat 47556461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 29437880 - 29437827
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||||||||||    
T  29437880 tccctaattataagactcttttgaaaaaataatttgtccctttttataagaccc 29437827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 49549017 - 49549065
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||    
T  49549017 aattataagactcttttgaaaaaataatttgtccctttttataagaccc 49549065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 52428897 - 52428948
Alignment:
Q  183 catcccgaattataagacttctttgaaaaaataatttgtccctttttataag 234  Q
    |||||| ||||||||||| | |||||||||||||||||||||||||||||||    
T  52428897 catccctaattataagacctttttgaaaaaataatttgtccctttttataag 52428948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 15302781 - 15302718
Alignment:
Q  174 tactactttcatcccgaattataagacttctttgaaaaaataatttgtccctttttataagacc 237  Q
    |||||| | |||||| ||||||||||    ||||||||||||||||||||||||||||||||||    
T  15302781 tactacctccatccctaattataagatccttttgaaaaaataatttgtccctttttataagacc 15302718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 4280152 - 4280102
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataaga 235  Q
    |||| |||||||||||   ||||||||||||||||||||||||||||||||    
T  4280152 tccctaattataagacccttttgaaaaaataatttgtccctttttataaga 4280102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 46271376 - 46271326
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataaga 235  Q
    |||| |||||||||||   ||||||||||||||||||||||||||||||||    
T  46271376 tccctaattataagacccttttgaaaaaataatttgtccctttttataaga 46271326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 17483744 - 17483797
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| |||||||||||   ||||||||||||||||||| |||||||||||||||    
T  17483744 tccctaattataagacccttttgaaaaaataatttgtctctttttataagaccc 17483797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 36674318 - 36674274
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataaga 235  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||    
T  36674318 aattataagactt-tttgaaaaaaaaatttgtccctttttataaga 36674274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 48067916 - 48067868
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||||   |||||||||| ||||||||||||||||||||||||    
T  48067916 aattataagacccttttgaaaaaaaaatttgtccctttttataagaccc 48067868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 42872341 - 42872307
Alignment:
Q  204 tttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||| ||||||||||||||||||||||||    
T  42872341 tttgaaaaaaaaatttgtccctttttataagaccc 42872307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 47554457 - 47554511
Alignment:
Q  22 gtcttggtgcttgttttccgctttatatccccagaataatccttattcacatttt 76  Q
    ||||| ||||||||||||||||  |||||| || ||||||||||| |||||||||    
T  47554457 gtcttagtgcttgttttccgctcaatatccacacaataatccttagtcacatttt 47554511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 51467479 - 51467445
Alignment:
Q  204 tttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||||||||||||||||||||||| ||||    
T  51467479 tttgaaaaaataatttgtccctttttataacaccc 51467445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 3549062 - 3549095
Alignment:
Q  204 tttgaaaaaataatttgtccctttttataagacc 237  Q
    ||||||||||||| ||||||||||||||||||||    
T  3549062 tttgaaaaaataaattgtccctttttataagacc 3549095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 9413351 - 9413298
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| |||||||||||   |||||||||| || |||||||||||||||||||||    
T  9413351 tccctaattataagacccttttgaaaaaaaaaattgtccctttttataagaccc 9413298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 6089751 - 6089799
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||||   |||||||||| || |||||||||||||||||||||    
T  6089751 aattataagacccttttgaaaaaaaaaattgtccctttttataagaccc 6089799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 8472041 - 8472113
Alignment:
Q  166 aaaaatattactactttcatcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    ||||||| |||||||| | |||| |||||||||||   ||||| ||| |  ||||||||||||||||||||||    
T  8472041 aaaaatactactacttccgtccctaattataagacccttttgagaaatttttttgtccctttttataagaccc 8472113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 21631148 - 21631080
Alignment:
Q  170 atattactactttcatcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||| | | |||| |||||||||||   |||||| ||| || |||||||||||||||||||||    
T  21631148 atattactacctccgtccctaattataagacccttttgaagaaacaaattgtccctttttataagaccc 21631080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 32153815 - 32153767
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    ||||||||||| | ||| ||||||||  |||||||||||||||||||||    
T  32153815 aattataagacctttttaaaaaaatatgttgtccctttttataagaccc 32153767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 34931095 - 34931143
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||||   |||||||||| || |||||||||||||||||||||    
T  34931095 aattataagacccttttgaaaaaaaaaattgtccctttttataagaccc 34931143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 38505829 - 38505861
Alignment:
Q  204 tttgaaaaaataatttgtccctttttataagac 236  Q
    |||||||||||||||||| ||||||||||||||    
T  38505829 tttgaaaaaataatttgttcctttttataagac 38505861  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 9682613 - 9682666
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||||||||||    
T  9682613 tccctaattataagactcttttgaaaaaataatttgtccctttttataagaccc 9682666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 35888323 - 35888373
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataaga 235  Q
    |||| ||||||||||| | ||||||||||||||||||||||||||||||||    
T  35888323 tccctaattataagacctttttgaaaaaataatttgtccctttttataaga 35888373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 44510369 - 44510316
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| |||||||||||   |||||||||||||||||||||||||||||||||||    
T  44510369 tccctaattataagaccattttgaaaaaataatttgtccctttttataagaccc 44510316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 8782234 - 8782186
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||||   |||||||||||||||||||||||||||||||||||    
T  8782234 aattataagacccttttgaaaaaataatttgtccctttttataagaccc 8782186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 30534716 - 30534767
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagac 236  Q
    |||| |||||||||||   |||||||||||||||||||||||||||||||||    
T  30534716 tccctaattataagacacttttgaaaaaataatttgtccctttttataagac 30534767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 49045141 - 49045094
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagacc 237  Q
    |||||||||||   ||||||||||||||||||||||||||||||||||    
T  49045141 aattataagacccttttgaaaaaataatttgtccctttttataagacc 49045094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 32699711 - 32699677
Alignment:
Q  204 tttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||||||||||||||||||||||||||||    
T  32699711 tttgaaaaaataatttgtccctttttataagaccc 32699677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 33682730 - 33682778
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||||   ||| |||||||||||||||||||||||||||||||    
T  33682730 aattataagacccttttaaaaaaataatttgtccctttttataagaccc 33682778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 2345569 - 2345518
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagac 236  Q
    |||| ||||||||||||  |||||||||||||||||| |||||||| |||||    
T  2345569 tccctaattataagactcttttgaaaaaataatttgttcctttttaaaagac 2345518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 3024600 - 3024646
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagac 236  Q
    |||||||||||   |||||||||| ||||||||||||||||||||||    
T  3024600 aattataagacccttttgaaaaaaaaatttgtccctttttataagac 3024646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 13235949 - 13236006
Alignment:
Q  181 ttcatcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||| |||||||||||   |||||||||||||||||||||||||||||||||||    
T  13235949 ttcatccctaattataagacccttttgaaaaaataatttgtccctttttataagaccc 13236006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 24857567 - 24857620
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||||||||||    
T  24857567 tccctaattataagactcttttgaaaaaataatttgtccctttttataagaccc 24857620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 39971025 - 39971075
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataaga 235  Q
    |||| ||||||||||||  ||||||||||||||||||||||||||||||||    
T  39971025 tccctaattataagactcttttgaaaaaataatttgtccctttttataaga 39971075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 21069648 - 21069700
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagacc 237  Q
    |||| |||||||||||   ||||||||||||||||||||||||||||||||||    
T  21069648 tccctaattataagacccttttgaaaaaataatttgtccctttttataagacc 21069700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 20186512 - 20186565
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| |||||||||||   |||||||||| ||||||||||||||||||||||||    
T  20186512 tccctaattataagacccttttgaaaaaaaaatttgtccctttttataagaccc 20186565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 31642198 - 31642251
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| ||||||||||| ||||||| |||| || |||||||||||||||||||||    
T  31642198 tccctaattataagacctctttgagaaaaaaaattgtccctttttataagaccc 31642251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 16285211 - 16285163
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||||   ||| |||||||||||||||||||||||||||||||    
T  16285211 aattataagaccctttttaaaaaataatttgtccctttttataagaccc 16285163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 11432320 - 11432371
Alignment:
Q  185 tcccgaattataagacttctttga-aaaaataatttgtccctttttataaga 235  Q
    |||| ||||||||||| ||||||| ||||| |||||||||||||||||||||    
T  11432320 tccctaattataagacctctttgacaaaaaaaatttgtccctttttataaga 11432371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 235
Target Start/End: Complemental strand, 16637008 - 16636977
Alignment:
Q  204 tttgaaaaaataatttgtccctttttataaga 235  Q
    ||||||||||||||||||||||||||||||||    
T  16637008 tttgaaaaaataatttgtccctttttataaga 16636977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 35784938 - 35784892
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagac 236  Q
    |||||||||| |  |||||||||||| ||||||||||||||||||||    
T  35784938 aattataagattcttttgaaaaaatattttgtccctttttataagac 35784892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 7940463 - 7940516
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| |||||||||||   |||||||||| || |||||||||||||||||||||    
T  7940463 tccctaattataagacccttttgaaaaaaaaaattgtccctttttataagaccc 7940516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 25837008 - 25837069
Alignment:
Q  174 tactactttcatcccgaattataagacttctttgaaaaaataatttgtccctttttataaga 235  Q
    |||||||| |||||| |||||||||||   ||||| |||| ||||||| |||||||||||||    
T  25837008 tactacttccatccctaattataagacccttttgagaaaaaaatttgttcctttttataaga 25837069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 32617796 - 32617749
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||||   |||||||||| ||||||||||||||||||||||||    
T  32617796 aattataagacccttttgaaaaaa-aatttgtccctttttataagaccc 32617749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 39758903 - 39758955
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagacc 237  Q
    |||| |||||| |||| | |||||||||| |||||||||||||||| ||||||    
T  39758903 tccctaattatcagacctttttgaaaaaaaaatttgtccctttttacaagacc 39758955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 13548991 - 13549044
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||||||||||    
T  13548991 tccctaattataagactcttttgaaaaaataatttgtccctttttataagaccc 13549044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 35909637 - 35909703
Alignment:
Q  170 atattactactttcatcccgaattataagacttctttgaaaaaataatttgtccctttttataagac 236  Q
    |||||||||| | | |||| |||||||||||   |||||||||||||||||||||||||||||||||    
T  35909637 atattactacatccgtccccaattataagacccttttgaaaaaataatttgtccctttttataagac 35909703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 39797424 - 39797498
Alignment:
Q  165 taaaaatat-tactactttcatcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    ||||||||| |||||| | | |||| ||||||||||| | ||||||||||| |||||||||||||||||||||||    
T  39797424 taaaaatatatactacctccgtccctaattataagacctttttgaaaaaatcatttgtccctttttataagaccc 39797498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 6629512 - 6629448
Alignment:
Q  171 tattactactttcatcccgaattataagacttctttgaaaaaataatttgtccctttttataagac 236  Q
    ||||||||| | | |||| ||||||||||| | |||||||||||||||||||||||||||||||||    
T  6629512 tattactacctccgtccctaattataagacct-tttgaaaaaataatttgtccctttttataagac 6629448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 233
Target Start/End: Complemental strand, 23390369 - 23390326
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataa 233  Q
    ||||||||||| | ||||||||||||||||||||||||||||||    
T  23390369 aattataagacctttttgaaaaaataatttgtccctttttataa 23390326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 18872728 - 18872778
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataaga 235  Q
    |||| |||||||||||   ||||||||||||||||||||||||||||||||    
T  18872728 tccctaattataagacccttttgaaaaaataatttgtccctttttataaga 18872778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 29508834 - 29508868
Alignment:
Q  203 ctttgaaaaaataatttgtccctttttataagacc 237  Q
    |||||||||||||||||||||||||||||||||||    
T  29508834 ctttgaaaaaataatttgtccctttttataagacc 29508868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 7698508 - 7698441
Alignment:
Q  172 attactactttcatcccgaattataagacttctttgaaaaaa-taatttgtccctttttataagaccc 238  Q
    |||||||| | | |||| |||||||||||   |||||||||| |||||||||||||||||||||||||    
T  7698508 attactacctccgtccctaattataagacccttttgaaaaaaataatttgtccctttttataagaccc 7698441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 30010887 - 30010824
Alignment:
Q  174 tactactttcatcccgaattataagacttctttgaaaaaataatttgtccctttttataagacc 237  Q
    |||||| | |||||| |||||||||||   || ||||||||||||||| |||||||||||||||    
T  30010887 tactacatccatccctaattataagaccctttcgaaaaaataatttgttcctttttataagacc 30010824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 35675946 - 35675895
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagac 236  Q
    |||| |||||||||||   |||||||||| ||||||||||||||||||||||    
T  35675946 tccctaattataagacccttttgaaaaaaaaatttgtccctttttataagac 35675895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 7698439 - 7698405
Alignment:
Q  204 tttgaaaaaataatttgtccctttttataagaccc 238  Q
    ||||||||||||||||||||| |||||||||||||    
T  7698439 tttgaaaaaataatttgtcccattttataagaccc 7698405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 5743685 - 5743632
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| |||||||||||   ||||| |||| ||||||||||||||||||||||||    
T  5743685 tccctaattataagacccttttgagaaaaaaatttgtccctttttataagaccc 5743632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 20391463 - 20391411
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| |||||||||||   |||||||||| ||||||||||||||||||||||||    
T  20391463 tccctaattataagacccttttgaaaaaa-aatttgtccctttttataagaccc 20391411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 29520190 - 29520137
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| |||||||||||   ||||| |||| ||||||||||||||||||||||||    
T  29520190 tccctaattataagacccttttgagaaaaaaatttgtccctttttataagaccc 29520137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 30050110 - 30050057
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| ||||||||||||  |||||||||| | || |||||||||||||||||||    
T  30050110 tccctaattataagactcttttgaaaaaaaatttggtccctttttataagaccc 30050057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 53283863 - 53283904
Alignment:
Q  136 caaaaaagtttgaacagtgaaattttgaataaaaatattact 177  Q
    |||||||||||||| |||||| |||| |||||||||||||||    
T  53283863 caaaaaagtttgaaaagtgaattttttaataaaaatattact 53283904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 1028534 - 1028582
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||||   |||||||||| || |||||||||||||||||||||    
T  1028534 aattataagacccttttgaaaaaaaaaattgtccctttttataagaccc 1028582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 37780220 - 37780188
Alignment:
Q  204 tttgaaaaaataatttgtccctttttataagac 236  Q
    |||||||||||||||||| ||||||||||||||    
T  37780220 tttgaaaaaataatttgttcctttttataagac 37780188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 41191649 - 41191601
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||||   ||||| |||| ||||||||||||||||||||||||    
T  41191649 aattataagacccttttgagaaaaaaatttgtccctttttataagaccc 41191601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 49228739 - 49228691
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||||   |||||| ||| ||||||||||||||||||||||||    
T  49228739 aattataagacccttttgaagaaaaaatttgtccctttttataagaccc 49228691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 36584721 - 36584772
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagac 236  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||||||||    
T  36584721 tccctaattataagactcttttgaaaaaataatttgtccctttttataagac 36584772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 17589902 - 17589851
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagac 236  Q
    |||| |||||||||||   |||||||||||||||||||||||||||||||||    
T  17589902 tccctaattataagacacttttgaaaaaataatttgtccctttttataagac 17589851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 52032131 - 52032092
Alignment:
Q  138 aaaaagtttgaacagtgaaattttgaataaaaatattact 177  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  52032131 aaaaagtttgaaaagtgaaattttgaataaaaatattact 52032092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 12918880 - 12918814
Alignment:
Q  169 aatattactactttcatcccgaattataagacttctttgaaaaaataatttgtccctttttataaga 235  Q
    |||| |||||| | |||||| |||||||||||    |||||||||||||||||||||||||||||||    
T  12918880 aatactactacctccatccctaattataagaccctcttgaaaaaataatttgtccctttttataaga 12918814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 32969251 - 32969201
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataaga 235  Q
    |||| |||||||||||   ||||||||||||||||||||||||||||||||    
T  32969251 tccctaattataagacccttttgaaaaaataatttgtccctttttataaga 32969201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 15996799 - 15996746
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| |||||||||||   |||||||||| ||||||||||||||||||||||||    
T  15996799 tccctaattataagacccttttgaaaaaaaaatttgtccctttttataagaccc 15996746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 20621710 - 20621657
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| ||||||||||||  |||||||||| || |||||||||||||||||||||    
T  20621710 tccctaattataagactcttttgaaaaaaaaaattgtccctttttataagaccc 20621657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 45404386 - 45404439
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| |||||||||||   ||||||||||||||||||| |||||||||||||||    
T  45404386 tccctaattataagacccttttgaaaaaataatttgtctctttttataagaccc 45404439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 45745789 - 45745842
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| ||||||||||||  |||||||||| || |||||||||||||||||||||    
T  45745789 tcccaaattataagactcttttgaaaaaaaaaattgtccctttttataagaccc 45745842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 28875277 - 28875229
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataa 233  Q
    |||| |||||||||||   ||||||||||||||||||||||||||||||    
T  28875277 tccctaattataagacccttttgaaaaaataatttgtccctttttataa 28875229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 42755352 - 42755404
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagacc 237  Q
    |||| ||||||||||||   |||||||||||||||||| ||||||||||||||    
T  42755352 tccctaattataagactctattgaaaaaataatttgtctctttttataagacc 42755404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 45049043 - 45048996
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagacc 237  Q
    ||||||||||| | |||||||||| | |||||||||||||||||||||    
T  45049043 aattataagacctttttgaaaaaaaattttgtccctttttataagacc 45048996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 48904289 - 48904238
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagac 236  Q
    |||| |||||||||||   ||| |||||||||||||||||||||||||||||    
T  48904289 tccctaattataagacccttttaaaaaaataatttgtccctttttataagac 48904238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 238
Target Start/End: Original strand, 31541061 - 31541091
Alignment:
Q  208 aaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||||||||||||||||||||||||    
T  31541061 aaaaaataatttgtccctttttataagaccc 31541091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 10015815 - 10015762
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| |||||||||||   |||||||||| || |||||||||||||||||||||    
T  10015815 tccctaattataagacccttttgaaaaaaaaaattgtccctttttataagaccc 10015762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 20877649 - 20877694
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataaga 235  Q
    ||||||||||||| |||||||||||   ||||||||||||||||||    
T  20877649 aattataagacttttttgaaaaaatttgttgtccctttttataaga 20877694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 42526632 - 42526599
Alignment:
Q  204 tttgaaaaaataatttgtccctttttataagacc 237  Q
    ||||||||||||||||||||||||||| ||||||    
T  42526632 tttgaaaaaataatttgtccctttttacaagacc 42526599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 49383355 - 49383407
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| ||||||||||||  |||||||||| |||| |||||||||||||||||||    
T  49383355 tccctaattataagactcttttgaaaaaaaaatt-gtccctttttataagaccc 49383407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 237
Target Start/End: Complemental strand, 52693691 - 52693662
Alignment:
Q  208 aaaaaataatttgtccctttttataagacc 237  Q
    ||||||||||||||||||||||||||||||    
T  52693691 aaaaaataatttgtccctttttataagacc 52693662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 31186774 - 31186822
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||||   |||||||||| || |||||||||||||||||||||    
T  31186774 aattataagacccttttgaaaaaaaaaattgtccctttttataagaccc 31186822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 47008547 - 47008475
Alignment:
Q  166 aaaaatattactactttcatcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||||||| | | |||| |||||||||||   ||||| ||| |  ||||||||||||||||||||||    
T  47008547 aaaaatattactacctccgtccctaattataagacacttttgagaaatttttttgtccctttttataagaccc 47008475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 36750921 - 36750858
Alignment:
Q  174 tactactttcatcccgaattataagacttctttgaaaaaataatttgtccctttttataagacc 237  Q
    |||||||| | |||| |||||||||||   ||||||||||||||||||||||||||||||||||    
T  36750921 tactacttccgtccctaattataagacccttttgaaaaaataatttgtccctttttataagacc 36750858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 30830363 - 30830317
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagac 236  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||    
T  30830363 aattataagacctttttgaaaaaataatttgtccctttttataagac 30830317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 2805980 - 2806025
Alignment:
Q  132 catccaaaaaagtttgaacagtgaaattttgaataaaaatattact 177  Q
    |||||||||||||||||| | |||||||||||||||||||||||||    
T  2805980 catccaaaaaagtttgaaaaatgaaattttgaataaaaatattact 2806025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 3095310 - 3095362
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagacc 237  Q
    |||| |||||||||||   ||||||||||||||||||||||||||||||||||    
T  3095310 tccctaattataagacccttttgaaaaaataatttgtccctttttataagacc 3095362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 9701086 - 9701134
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||||   |||||||||||||||||||||||||||||||||||    
T  9701086 aattataagacccttttgaaaaaataatttgtccctttttataagaccc 9701134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 34432237 - 34432173
Alignment:
Q  174 tactactttcatcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||| | |||||| |||||||||||   ||| |||||||||||||||||||||||||||||||    
T  34432237 tactacctccatccctaattataagaccctttttaaaaaataatttgtccctttttataagaccc 34432173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 2788358 - 2788311
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagacc 237  Q
    |||||||| |||  ||||||||||||||||||||||||||||||||||    
T  2788358 aattataaaactcttttgaaaaaataatttgtccctttttataagacc 2788311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 30857949 - 30858000
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagac 236  Q
    |||| |||||||||||   |||||||||||||||||||||||||||||||||    
T  30857949 tccctaattataagacccttttgaaaaaataatttgtccctttttataagac 30858000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 12890234 - 12890181
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| |||||||||||   |||||||||| ||||||||||||||||||||||||    
T  12890234 tccctaattataagacccttttgaaaaaaaaatttgtccctttttataagaccc 12890181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 40789114 - 40789061
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| ||||||||||||  |||||||||| || |||||||||||||||||||||    
T  40789114 tccctaattataagactcttttgaaaaaaaaaattgtccctttttataagaccc 40789061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 41422523 - 41422571
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataa 233  Q
    |||| |||||||||||   ||||||||||||||||||||||||||||||    
T  41422523 tccctaattataagacccttttgaaaaaataatttgtccctttttataa 41422571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 41494648 - 41494600
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataa 233  Q
    |||| |||||||||||   ||||||||||||||||||||||||||||||    
T  41494648 tccctaattataagacccttttgaaaaaataatttgtccctttttataa 41494600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 32120974 - 32121008
Alignment:
Q  204 tttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||| ||||||||||||||||||||||||    
T  32120974 tttgaaaaaaaaatttgtccctttttataagaccc 32121008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 35179594 - 35179664
Alignment:
Q  168 aaatattactactttcatcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    ||||| |||||| | | |||| ||||||||||||  |||||||||||||||||||| ||||||||||||||    
T  35179594 aaataatactacctccgtccctaattataagactcttttgaaaaaataatttgtccttttttataagaccc 35179664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 36408426 - 36408479
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| ||||||||||| | |||||||||||||||| ||||||||||||||||||    
T  36408426 tccctaattataagacctttttgaaaaaataatttatccctttttataagaccc 36408479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 26625787 - 26625855
Alignment:
Q  168 aaatattactactttcatcccgaattataagacttctttgaaaaaataatttgtccctttttataagac 236  Q
    ||||| |||||| | |||||| ||||||||||| | ||||| |||| ||||||||||||||||||||||    
T  26625787 aaataatactacctccatccctaattataagacctttttgagaaaaaaatttgtccctttttataagac 26625855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 5109911 - 5109945
Alignment:
Q  204 tttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||||||||||||||||||||||||||||    
T  5109911 tttgaaaaaataatttgtccctttttataagaccc 5109945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 23995607 - 23995641
Alignment:
Q  204 tttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||||||||||||||||||||||||||||    
T  23995607 tttgaaaaaataatttgtccctttttataagaccc 23995641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 26016580 - 26016632
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagacc 237  Q
    |||| |||||||||||   |||||||||| |||||||||||||||||||||||    
T  26016580 tccctaattataagacccttttgaaaaaaaaatttgtccctttttataagacc 26016632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 39406575 - 39406623
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    ||||||||||| | ||||| |||| ||||||||||||||||||||||||    
T  39406575 aattataagacctttttgataaaaaaatttgtccctttttataagaccc 39406623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 16448771 - 16448726
Alignment:
Q  192 ttataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    ||||||||||  |||||||||| ||||||||||||||||||||||||    
T  16448771 ttataagactcttttgaaaaaa-aatttgtccctttttataagaccc 16448726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 43293022 - 43292972
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataaga 235  Q
    |||| ||||||||||||  |||||||||| ||| |||||||||||||||||    
T  43293022 tccctaattataagactcttttgaaaaaaaaatatgtccctttttataaga 43292972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 17336417 - 17336481
Alignment:
Q  172 attactactttcatcccgaattataagacttctttgaaaaaataatttgtccctttttataagacc 237  Q
    |||||||| | | |||| |||||||||||   ||||||||||||||| ||||||||||||||||||    
T  17336417 attactacatccgtccctaattataagacccttttgaaaaaataatt-gtccctttttataagacc 17336481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 23487075 - 23487128
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| |||||||||||   |||||||||| || |||||||||||||||||||||    
T  23487075 tccctaattataagacccttttgaaaaaaaaaattgtccctttttataagaccc 23487128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 28965534 - 28965567
Alignment:
Q  204 tttgaaaaaataatttgtccctttttataagacc 237  Q
    |||||||||| |||||||||||||||||||||||    
T  28965534 tttgaaaaaaaaatttgtccctttttataagacc 28965567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 32675783 - 32675730
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| |||||||||||   ||||| |||| ||||||||||||||||||||||||    
T  32675783 tccctaattataagacccttttgagaaaaaaatttgtccctttttataagaccc 32675730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 36941285 - 36941330
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataaga 235  Q
    |||||||||||   |||||||||||||| |||||||||||||||||    
T  36941285 aattataagacccttttgaaaaaataatctgtccctttttataaga 36941330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 42885065 - 42885118
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| |||||||||||   |||||||||| || |||||||||||||||||||||    
T  42885065 tccctaattataagacccttttgaaaaaaaaaattgtccctttttataagaccc 42885118  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 32522864 - 32522816
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||||   |||||||||| || |||||||||||||||||||||    
T  32522864 aattataagacccttttgaaaaaaaaaattgtccctttttataagaccc 32522816  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 36786478 - 36786530
Alignment:
Q  185 tcccgaattataagacttctttga-aaaaataatttgtccctttttataagac 236  Q
    |||| ||||||||||| | ||||| ||||| ||||||||||||||||||||||    
T  36786478 tccctaattataagacctttttgagaaaaaaaatttgtccctttttataagac 36786530  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 41898503 - 41898471
Alignment:
Q  204 tttgaaaaaataatttgtccctttttataagac 236  Q
    |||||||||||||||||||| ||||||||||||    
T  41898503 tttgaaaaaataatttgtccttttttataagac 41898471  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 13321352 - 13321299
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| |||||||||||   |||||||||||||||||||||||||||||||||||    
T  13321352 tccctaattataagacccttttgaaaaaataatttgtccctttttataagaccc 13321299  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 22710282 - 22710330
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||||   |||||||||||||||||||||||||||||||||||    
T  22710282 aattataagacacttttgaaaaaataatttgtccctttttataagaccc 22710330  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 4175258 - 4175305
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagacc 237  Q
    |||||||||||   ||||||||||||||||||||||||||||||||||    
T  4175258 aattataagacccttttgaaaaaataatttgtccctttttataagacc 4175305  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 28236222 - 28236176
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagac 236  Q
    |||||||||||   |||||||||||||||||||||||||||||||||    
T  28236222 aattataagacacttttgaaaaaataatttgtccctttttataagac 28236176  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 28980863 - 28980829
Alignment:
Q  204 tttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||||||||||||||||||||||||||||    
T  28980863 tttgaaaaaataatttgtccctttttataagaccc 28980829  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 6418659 - 6418626
Alignment:
Q  204 tttgaaaaaataatttgtccctttttataagacc 237  Q
    ||||||||||||||||||||||||||||||||||    
T  6418659 tttgaaaaaataatttgtccctttttataagacc 6418626  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 9038653 - 9038706
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| |||||||||||   ||||||||||| |||||||||||||||||||||||    
T  9038653 tccctaattataagacccttttgaaaaaatcatttgtccctttttataagaccc 9038706  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 22999052 - 22999020
Alignment:
Q  204 tttgaaaaaataatttgtccctttttataagac 236  Q
    |||||||||||||||||||||||||||||||||    
T  22999052 tttgaaaaaataatttgtccctttttataagac 22999020  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 23789352 - 23789384
Alignment:
Q  204 tttgaaaaaataatttgtccctttttataagac 236  Q
    |||||||||||||||||||||||||||||||||    
T  23789352 tttgaaaaaataatttgtccctttttataagac 23789384  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 31150253 - 31150219
Alignment:
Q  204 tttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||| ||||||||||||||||||||||||    
T  31150253 tttgaaaaaaaaatttgtccctttttataagaccc 31150219  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 31091456 - 31091509
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| |||||||||||   |||||||||| || |||||||||||||||||||||    
T  31091456 tccctaattataagacccttttgaaaaaaaaaattgtccctttttataagaccc 31091509  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 8217726 - 8217694
Alignment:
Q  204 tttgaaaaaataatttgtccctttttataagac 236  Q
    |||||||||||||||||||| ||||||||||||    
T  8217726 tttgaaaaaataatttgtccatttttataagac 8217694  T

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Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 246472 - 246520
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||||   |||||||||||||||||||||||||||||||||||    
T  246472 aattataagacccttttgaaaaaataatttgtccctttttataagaccc 246520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 17494 - 17528
Alignment:
Q  204 tttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||||||||||||||||||||||||||||    
T  17494 tttgaaaaaataatttgtccctttttataagaccc 17528  T

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Target: scaffold0038 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 36384 - 36338
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagac 236  Q
    |||||||||||   |||||||||||||||||||||||||||||||||    
T  36384 aattataagacacttttgaaaaaataatttgtccctttttataagac 36338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0883 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0883
Description:

Target: scaffold0883; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 1736 - 1784
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    ||||||||||| | ||||| |||| ||||||||||||||||||||||||    
T  1736 aattataagacctttttgataaaaaaatttgtccctttttataagaccc 1784  T

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Target: scaffold0095 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 45529 - 45577
Alignment:
Q  190 aattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    ||||||||||| | ||||| |||| ||||||||||||||||||||||||    
T  45529 aattataagacctttttgataaaaaaatttgtccctttttataagaccc 45577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 8248 - 8282
Alignment:
Q  204 tttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||||||||| ||||||||||||||||||||||||    
T  8248 tttgaaaaaaaaatttgtccctttttataagaccc 8282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 61877 - 61826
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagaccc 238  Q
    |||| ||||||||||| | |||||||||| ||||||||||||||||||||||||    
T  61877 tccctaattataagacct-tttgaaaaaa-aatttgtccctttttataagaccc 61826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 164225 - 164277
Alignment:
Q  185 tcccgaattataagacttctttgaaaaaataatttgtccctttttataagacc 237  Q
    |||| |||||||||||   |||||||||| || ||||||||||||||||||||    
T  164225 tccctaattataagacccttttgaaaaaaaaaattgtccctttttataagacc 164277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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