View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16975_high_63 (Length: 227)
Name: NF16975_high_63
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_high_63 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 8270011 - 8270205
Alignment:
| Q |
13 |
gaagcaaaggctttacaagattcacccttgaacctttatatcatgacatatgtttgttcatgttttctcaagtggctttacgtacgacaaatttgagatc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8270011 |
gaagcaaaggctttacaagattcacccttgaacctttatatcatgacatatgtttgttcatgttttctcaagtggctttacgtacgacaaatttgagatc |
8270110 |
T |
|
| Q |
113 |
ttgttgtggagtatgaagcaaagaattacaagattcattcttgggccaaatatgtgagatgtctattaaccattggatgagtgagtcaaccatgt |
207 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8270111 |
ttgctgtggagtatgaagcaaagaattacaagattcattcttgggccaaatatgtgagatgtctattaaccattggatgagtgagtcaaccatgt |
8270205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University