View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16975_high_7 (Length: 521)
Name: NF16975_high_7
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 12 - 503
Target Start/End: Original strand, 54156724 - 54157215
Alignment:
| Q |
12 |
aattctgttatgactatatatactaacgaagacaacagaatacaatgatttttacaacattttttcccagcaatctattataacacccctatgccgaaca |
111 |
Q |
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| T |
54156724 |
aattctgttatgactatatatactaacgaagacaacagaatacaatgatttttacaatattttttcccagcaatctattataacacccctatgccgaaca |
54156823 |
T |
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| Q |
112 |
tcaggctgtacagtatctactatctagattctagtgcaatggctataggaaaggagcgaaaaatccaaccccacagtctctcgatttttccattcaaaga |
211 |
Q |
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| T |
54156824 |
tcaggctgtacagtatctactatctagattctagtgcaatggctataggaaaggagcgaaaaatccaaccccacagtctctcgatttttccattcaaaga |
54156923 |
T |
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| Q |
212 |
tgattaaataaaataccagtaaaaggtaaatgtgcaagaaaatgatgattctaaaacatcatcaacaaccaagcctgatagtttaaaacatgaccatata |
311 |
Q |
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| T |
54156924 |
tgattaaataaaataccagtaaaaggtaaatgtgcaagaaaatgatgagtctaaaacatcatcaacaaccaagcctgatagtttaaaagatgactatata |
54157023 |
T |
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| Q |
312 |
taaaagtgaaacaatgacaattaaattaactttcaatctgctcaatcaaatttcaatttgaaaatcaaagcatacagacaggtacacagactaccgtatg |
411 |
Q |
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| T |
54157024 |
taaaagtgaaacaatgacaattaaattaactttcaatctgctcaatcaaatttcaatttgaaaatcaaagcatacagacaggtacacagactaccgtatg |
54157123 |
T |
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| Q |
412 |
ctaaatgttggtattcaaaaagtttggatgaaatcataataacaagacgtgtcattcaccacattaaatagctatttatctaaccatccaac |
503 |
Q |
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| T |
54157124 |
ctaaatgttggtattcaaaaagtttggatgaaatcataataacaagatgtgtcattcaccacattaaatagctatttatctaaccatccaac |
54157215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 409 - 499
Target Start/End: Complemental strand, 53869224 - 53869130
Alignment:
| Q |
409 |
atgctaaatgttggtattcaaaaagttt--ggatgaaatcataataacaagacgtgtca--ttcaccacattaaatagctatttatctaaccatc |
499 |
Q |
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|||||||||||||||||||| ||||||| | |||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||| |
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| T |
53869224 |
atgctaaatgttggtattcataaagtttttgaatgaaatcataataacaagacgagtcacattcaccacattaaatagctatttatttaaccatc |
53869130 |
T |
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