View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16975_low_11 (Length: 448)
Name: NF16975_low_11
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_low_11 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 16 - 448
Target Start/End: Complemental strand, 13976578 - 13976146
Alignment:
| Q |
16 |
tctttgtattctgttgattgacatagcatatcaacannnnnnngtgagtttgagatttgtgctgtttgttctttgtcgtcaccttttgttaaactaactg |
115 |
Q |
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| T |
13976578 |
tctttgtattctgttgattgacatagcatatcaacatttttttgtgagtttgagatttgtgctgtttgttctttgtcgtcaccttttgttaaactaactg |
13976479 |
T |
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| Q |
116 |
cgacggcgcccaccatagccacaagaagtatgcaagatacaccaagaagtgcatactttttcccttggccttggccaccattattgtcatttcctcccat |
215 |
Q |
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| T |
13976478 |
cgacggcgcccaccatagccacaagaagtatgcaagatacaccaagaagtgcatactttttcccttggccttggccaccattattgtcatttcctcccat |
13976379 |
T |
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| Q |
216 |
attttatnnnnnnncaattaatttgtctataaactatatagtannnnnnnncttatagccctttatttctgggcagtgtgtttcaattgcccggtaggga |
315 |
Q |
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| T |
13976378 |
attttataaaaaaacaattaatttttctataaactatatagtattttttttcttatagccctttatttctgggcagtgtttttcaattgcccggtaggga |
13976279 |
T |
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| Q |
316 |
gggctatgtttttcttctttattttgtgagattggttctttaaatacacatgcattgaattaattatagctacaaaacatatacctgttcccttgtgaaa |
415 |
Q |
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| T |
13976278 |
gggctatgtttttcttctttattttgtgagattggttctttaaatacacatgcattgaattaattatagctacaaaacatatacatgttcccttgtgaaa |
13976179 |
T |
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| Q |
416 |
cggaaaaatagttgggaaaccatttgttttaac |
448 |
Q |
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| T |
13976178 |
cggaaaaatagttgggaaaccatttgttttaac |
13976146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 16 - 328
Target Start/End: Complemental strand, 13966410 - 13966096
Alignment:
| Q |
16 |
tctttgtattctgttgattgacatagcatatcaacannnnnnngtgagtttgagatttgtgctgtttgttctttgtcgtcaccttttgttaaactaactg |
115 |
Q |
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| T |
13966410 |
tctttgaattttgttgattgacatagcatatcaacatttttttgcgagttagagatatgtgctttttgttctccatcgccaccctttgttaaactaactg |
13966311 |
T |
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| Q |
116 |
cgacggcgcccaccatagccacaagaagtatgcaagatacaccaagaagtgcatactttttcccttggccttggccaccattattgtcatttcctcccat |
215 |
Q |
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| T |
13966310 |
cgacgacgcctaccatagccacaagaagtatgcaagatacaccaagaagtgcatgctttttcccttggccttggccaccattattgtcatttcctcccat |
13966211 |
T |
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| Q |
216 |
attttatnnnnnnncaattaatttgtctataaactatatagta--nnnnnnnnctta-tagccctttatttctgggcagtgtgtttcaattgcccggtag |
312 |
Q |
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| T |
13966210 |
attttat-aaaaaacaattaatttttctataaactatatagtattttttttttcttattagccctttatttctgggcagtgtttttcaattgcccggtag |
13966112 |
T |
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| Q |
313 |
ggagggctatgttttt |
328 |
Q |
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| T |
13966111 |
agagggctatgttttt |
13966096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 448
Target Start/End: Complemental strand, 13966041 - 13965952
Alignment:
| Q |
359 |
atacacatgcattgaattaattatagctacaaaacatatacctgttcccttgtgaaacggaaaaatagttgggaaaccatttgttttaac |
448 |
Q |
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| T |
13966041 |
atacatatgcattgaagtacctgtagctacaaaaaacaaacaggttcacttgtgaaacggaaaaatatttgggaaaccgtttgttttaac |
13965952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 13958782 - 13958710
Alignment:
| Q |
127 |
accatagccacaagaagtatgcaagatacaccaagaagtgcatactttttcccttggccttggccaccattat |
199 |
Q |
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| T |
13958782 |
accatagctacaagaagtatggaagaaacaccaacaagtgcaaaccttttactttggtcatgaccaccattat |
13958710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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