View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16975_low_15 (Length: 404)
Name: NF16975_low_15
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_low_15 |
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| [»] scaffold1445 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 19 - 386
Target Start/End: Complemental strand, 26372612 - 26372242
Alignment:
| Q |
19 |
cagtcatgcatacaatattttaatatcatgaaaattgatgcaataaatcaaatatgaaacacc------tacacagacaccgatgccaatactaatttga |
112 |
Q |
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| T |
26372612 |
cagtcatgcatacaatattttaatatcatgaaaattgatgcaataaatcgaatatgaaacaccaacacatacacagacaccgatgccaatactaatttga |
26372513 |
T |
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| Q |
113 |
gaaaatgaaattatagaatgtaatcacattgttagtggcgtgtcaggccagacactgacacgtattgtcttcaatcagaagtgtcagtgatacaaataaa |
212 |
Q |
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| T |
26372512 |
gaaaatgaaattatagaatgtaatcacattgttagtggcgtgtcaggccagacactgacacgtattgtcttcaatcaaaagtgtcagtgatacaaataga |
26372413 |
T |
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| Q |
213 |
tnnnnnnnntgaattaaaattaccagcagattgacgttgaaaagaccttttcccttcccagaagccaagaacagctcattccaacacggcttgtaacctc |
312 |
Q |
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| T |
26372412 |
taaaaa---tgaattaaaattaccagcagattgatgttaaaaagaccctttcccttcccagaagccaagaacagctcattccaacaaggcttataacctc |
26372316 |
T |
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| Q |
313 |
tatgaaaattacgaatttcagaaggacgaaaaaaccaaacaactcttatcatctttgcacgactagtctcgtac |
386 |
Q |
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| T |
26372315 |
tatgaaaattacgaatttcagaaggacgaaaaaaccaaacaactcttatcatctttgcacgactagtctcgtac |
26372242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1445 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold1445
Description:
Target: scaffold1445; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 254 - 368
Target Start/End: Complemental strand, 1325 - 1211
Alignment:
| Q |
254 |
aagaccttttcccttcccagaagccaagaacagctcattccaacacggcttgtaacctctatgaaaattacgaatttcagaaggacgaaaaaaccaaaca |
353 |
Q |
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| T |
1325 |
aagacctttgcctttcccagaagccaagaacaactcattccaactcggctgataacttcgatgaaaactctgaatttccgaaggacgaaagaaccaaaca |
1226 |
T |
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| Q |
354 |
actcttatcatcttt |
368 |
Q |
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| T |
1225 |
actctgatcatcttt |
1211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 149
Target Start/End: Original strand, 20119945 - 20120001
Alignment:
| Q |
94 |
gatgccaatactaatttgagaaaatgaaattatagaatgtaatcacat-tgttagtg |
149 |
Q |
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| T |
20119945 |
gatgccgataataatttgagaaaatgaaataatttaatgtaatcacatgtgttagtg |
20120001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 28524532 - 28524496
Alignment:
| Q |
105 |
taatttgagaaaatgaaattatagaatgtaatcacat |
141 |
Q |
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| T |
28524532 |
taatttgaaaaaatgaaatgatagaatgtaatcacat |
28524496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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