View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16975_low_16 (Length: 395)
Name: NF16975_low_16
Description: NF16975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16975_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 14 - 387
Target Start/End: Original strand, 12454024 - 12454394
Alignment:
| Q |
14 |
aggactgaattcatacaatggattgaaagcacagaacagcactgtgacatcactaggagttcctatgtgcactgaacaagcttttgcaaaagtgacgagt |
113 |
Q |
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| T |
12454024 |
aggactgaattcatacaatggattgaaagcacagaacagcactgtgacatcactaggagttcctatgtgcactgaacaagcttttgcaaaagtgatgagt |
12454123 |
T |
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| Q |
114 |
tcattgaaatatccatcaaatggaggaagaagaggaggtgcaggttcttcaacatgtaatgctgcaggtgagatttttcagattgcagctattatgaatg |
213 |
Q |
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| T |
12454124 |
tcattgaaatatccatcaaatggaggaagaagaggaggtgcaggttcttcaacatgtaatgctgcaggtgagatttttcagattgcagctattatgaatg |
12454223 |
T |
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| Q |
214 |
gacttactcttgttggtgttgctgttggatttgttcttcttcgaattgaagctgctgttgaagaagctgagtaagaatttttcatatatatttgtaataa |
313 |
Q |
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| T |
12454224 |
gacttactcttgttggtgttgctgttggatttgttcttcttcgaattgaagctgctgttgaagaagctgagtaagaatttttcatatatatttgtaataa |
12454323 |
T |
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| Q |
314 |
tgtaatgtaagtttatatcaggaagnnnnnnnntacaatttgtatgttatgtttgattcttgatgtgatgatgt |
387 |
Q |
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| T |
12454324 |
tgtaatgtaagtttatatcaggaag---aaaaatacaatttgtatgttatgtttgattcttgatgtgatgatgt |
12454394 |
T |
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